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Sequence, Chains, Asymmetric and Biological Units

Title TOMATO SPOTTED WILT TOSPOVIRUS NUCLEOCAPSID PROTEIN-SSRNA CO
Keywords VIRAL PROTEIN, NUCLEOCAPSID PROTEIN, BUNYAVIRUS, TOSPOVIRUS, PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5IP2     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NUCLEOPROTEIN  B 233 1833 0
2  Protein   NUCLEOPROTEIN  C 229 1803 0
3  Protein   NUCLEOPROTEIN  A 229 1803 0
4  RNA    E 5 100 0
5  RNA    F 3 60 0
6  RNA    D 3 60 0
total       702 5659 0
Proteins
Unit 1 SER2 LYS3 VAL4 LYS5 LEU6 THR7 LYS8 GLU9 ASN10 ILE11 VAL12 ALA13 LEU14 LEU15 THR16 GLN17 GLY18 LYS19 ASP20 LEU21 GLU22 PHE23 ASN33 PHE34 LYS35 THR36 PHE37 CYS38 LEU39 GLU40 ASN41 LEU42 ASP43 GLN44 ILE45 LYS46 LYS47 MET48 SER49 ILE50 ILE51 SER52 CYS53 LEU54 THR55 PHE56 LEU57 LYS58 ASN59 ARG60 GLN61 SER62 ILE63 MET64 LYS65 VAL66 ILE67 LYS68 GLN69 SER70 ASP71 PHE72 THR73 PHE74 GLY75 LYS76 ILE77 THR78 ILE79 LYS80 LYS81 THR82 SER83 ASP84 ARG85 ILE86 GLY87 ALA88 THR89 ASP90 MET91 THR92 PHE93 ARG94 ARG95 LEU96 ASP97 SER98 LEU99 ILE100 ARG101 VAL102 ARG103 LEU104 VAL105 GLU106 GLU107 THR108 GLY109 ASN110 SER111 GLU112 ASN113 LEU114 ASN115 THR116 ILE117 LYS118 SER119 LYS120 ILE121 ALA122 SER123 HIS124 PRO125 LEU126 ILE127 GLN128 ALA129 TYR130 GLY131 LEU132 PRO133 LEU134 ASP135 ASP136 ALA137 LYS138 SER139 VAL140 ARG141 LEU142 ALA143 ILE144 MET145 LEU146 GLY147 GLY148 SER149 LEU150 PRO151 LEU152 ILE153 ALA154 SER155 VAL156 ASP157 SER158 PHE159 GLU160 MET161 ILE162 SER163 VAL164 VAL165 LEU166 ALA167 ILE168 TYR169 GLN170 ASP171 ALA172 LYS173 TYR174 LYS175 ASP176 LEU177 GLY178 ILE179 ASP180 PRO181 LYS182 LYS183 TYR184 ASP185 THR186 LYS187 GLU188 ALA189 LEU190 GLY191 LYS192 VAL193 CYS194 THR195 VAL196 LEU197 LYS198 SER199 LYS200 ALA201 PHE202 GLU203 MET204 ASN205 GLU206 ASP207 GLN208 VAL209 LYS210 LYS211 GLY212 LYS213 GLU214 TYR215 ALA216 ALA217 ILE218 LEU219 SER220 SER221 SER222 ASN223 SER229 VAL230 ALA231 MET232 GLU233 HIS234 TYR235 SER236 GLU237 THR238 LEU239 ASN240 LYS241 PHE242 TYR243 GLU244 MET245 PHE246 GLY247 VAL248
Unit 2 SER2 LYS3 VAL4 LYS5 LEU6 THR7 LYS8 GLU9 ASN10 ILE11 VAL12 ALA13 LEU14 LEU15 THR16 GLN17 GLY18 LYS19 ASP20 LEU21 GLU22 PHE23 ASN33 PHE34 LYS35 THR36 PHE37 CYS38 LEU39 GLU40 ASN41 LEU42 ASP43 GLN44 ILE45 LYS46 LYS47 MET48 SER49 ILE50 ILE51 SER52 CYS53 LEU54 THR55 PHE56 LEU57 LYS58 ASN59 ARG60 GLN61 SER62 ILE63 MET64 LYS65 VAL66 ILE67 LYS68 GLN69 SER70 ASP71 PHE72 THR73 PHE74 GLY75 LYS76 ILE77 THR78 ILE79 LYS80 LYS81 THR82 SER83 ASP84 ARG85 ILE86 GLY87 ALA88 THR89 ASP90 MET91 THR92 PHE93 ARG94 ARG95 LEU96 ASP97 SER98 LEU99 ILE100 ARG101 VAL102 ARG103 LEU104 VAL105 GLU106 GLU107 THR108 GLY109 ASN110 SER111 GLU112 ASN113 LEU114 ASN115 THR116 ILE117 LYS118 SER119 LYS120 ILE121 ALA122 SER123 HIS124 PRO125 LEU126 ILE127 GLN128 ALA129 TYR130 GLY131 LEU132 PRO133 LEU134 ASP135 ASP136 ALA137 LYS138 SER139 VAL140 ARG141 LEU142 ALA143 ILE144 MET145 LEU146 GLY147 GLY148 SER149 LEU150 PRO151 LEU152 ILE153 ALA154 SER155 VAL156 ASP157 SER158 PHE159 GLU160 MET161 ILE162 SER163 VAL164 VAL165 LEU166 ALA167 ILE168 TYR169 GLN170 ASP171 ALA172 LYS173 TYR174 LYS175 ASP176 LEU177 GLY178 ILE179 ASP180 PRO181 LYS182 LYS183 TYR184 ASP185 THR186 LYS187 GLU188 ALA189 LEU190 GLY191 LYS192 VAL193 CYS194 THR195 VAL196 LEU197 LYS198 SER199 LYS200 ALA201 PHE202 GLU203 MET204 ASN205 GLU206 ASP207 GLN208 VAL209 LYS210 LYS211 GLY212 LYS213 GLU214 TYR215 ALA216 ALA217 ILE218 LEU219 SER220 SER221 SER222 ASN223 SER229 VAL230 ALA231 MET232 GLU233 HIS234 TYR235 SER236 GLU237 THR238 LEU239 ASN240 LYS241 PHE242 TYR243 GLU244
Unit 3 SER2 LYS3 VAL4 LYS5 LEU6 THR7 LYS8 GLU9 ASN10 ILE11 VAL12 ALA13 LEU14 LEU15 THR16 GLN17 GLY18 LYS19 ASP20 LEU21 GLU22 PHE23 ASN33 PHE34 LYS35 THR36 PHE37 CYS38 LEU39 GLU40 ASN41 LEU42 ASP43 GLN44 ILE45 LYS46 LYS47 MET48 SER49 ILE50 ILE51 SER52 CYS53 LEU54 THR55 PHE56 LEU57 LYS58 ASN59 ARG60 GLN61 SER62 ILE63 MET64 LYS65 VAL66 ILE67 LYS68 GLN69 SER70 ASP71 PHE72 THR73 PHE74 GLY75 LYS76 ILE77 THR78 ILE79 LYS80 LYS81 THR82 SER83 ASP84 ARG85 ILE86 GLY87 ALA88 THR89 ASP90 MET91 THR92 PHE93 ARG94 ARG95 LEU96 ASP97 SER98 LEU99 ILE100 ARG101 VAL102 ARG103 LEU104 VAL105 GLU106 GLU107 THR108 GLY109 ASN110 SER111 GLU112 ASN113 LEU114 ASN115 THR116 ILE117 LYS118 SER119 LYS120 ILE121 ALA122 SER123 HIS124 PRO125 LEU126 ILE127 GLN128 ALA129 TYR130 GLY131 LEU132 PRO133 LEU134 ASP135 ASP136 ALA137 LYS138 SER139 VAL140 ARG141 LEU142 ALA143 ILE144 MET145 LEU146 GLY147 GLY148 SER149 LEU150 PRO151 LEU152 ILE153 ALA154 SER155 VAL156 ASP157 SER158 PHE159 GLU160 MET161 ILE162 SER163 VAL164 VAL165 LEU166 ALA167 ILE168 TYR169 GLN170 ASP171 ALA172 LYS173 TYR174 LYS175 ASP176 LEU177 GLY178 ILE179 ASP180 PRO181 LYS182 LYS183 TYR184 ASP185 THR186 LYS187 GLU188 ALA189 LEU190 GLY191 LYS192 VAL193 CYS194 THR195 VAL196 LEU197 LYS198 SER199 LYS200 ALA201 PHE202 GLU203 MET204 ASN205 GLU206 ASP207 GLN208 VAL209 LYS210 LYS211 GLY212 LYS213 GLU214 TYR215 ALA216 ALA217 ILE218 LEU219 SER220 SER221 SER222 ASN223 SER229 VAL230 ALA231 MET232 GLU233 HIS234 TYR235 SER236 GLU237 THR238 LEU239 ASN240 LYS241 PHE242 TYR243 GLU244
Nucleic acids
Unit 4 U1 U2 U3 U4 U5
Unit 5 U1 U2 U3
Unit 6 U1 U2 U3
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany