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Sequence, Chains, Asymmetric and Biological Units

Title HUMAN TDP2 REACTION PRODUCT (5'-PHOSPHORYLATED DNA)-MG2+ COM
Keywords HYDROLASE/DNA, DNA REPAIR, ENDONUCLEASE/EXONUCLEASE/PHOSPHAT DOMAIN, HYDROLASE-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5INO     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TYROSYL-DNA PHOSPHODIESTERASE 2  A 253 2017 0
2  Other macromolecule   DNA (5'-D(P*CP*CP*GP*AP*AP*TP*TP*CP*G)-3')  D 9 184 0
3  Protein   TYROSYL-DNA PHOSPHODIESTERASE 2  B 248 1978 0
4  Other macromolecule   DNA (5'-D(P*CP*CP*GP*AP*AP*TP*TP*CP*G)-3')  C 9 184 0
5  Ligand   TYROSYL-DNA PHOSPHODIESTERASE 2  A 1 0 5
6 Water     5 0 5
total       525 4363 10
Proteins
Unit 1 GLN108 GLU109 ASN110 GLY111 SER112 MET113 PHE114 SER115 LEU116 ILE117 THR118 TRP119 ASN120 ILE121 ASP122 GLY123 LEU124 ASP125 LEU126 ASN127 ASN128 LEU129 SER130 GLU131 ARG132 ALA133 ARG134 GLY135 VAL136 CYS137 SER138 TYR139 LEU140 ALA141 LEU142 TYR143 SER144 PRO145 ASP146 VAL147 ILE148 PHE149 LEU150 GLN151 GLU152 VAL153 ILE154 PRO155 PRO156 TYR157 TYR158 SER159 TYR160 LEU161 LYS162 LYS163 ARG164 SER165 SER166 ASN167 TYR168 GLU169 ILE170 ILE171 THR172 GLY173 HIS174 GLU175 GLU176 GLY177 TYR178 PHE179 THR180 ALA181 ILE182 MET183 LEU184 LYS185 LYS186 SER187 ARG188 VAL189 LYS190 LEU191 LYS192 SER193 GLN194 GLU195 ILE196 ILE197 PRO198 PHE199 PRO200 SER201 THR202 LYS203 MET204 MET205 ARG206 ASN207 LEU208 LEU209 CYS210 VAL211 HIS212 VAL213 ASN214 VAL215 SER216 GLY217 ASN218 GLU219 LEU220 CYS221 LEU222 MET223 THR224 SER225 HIS226 LEU227 GLU228 SER229 THR230 ARG231 GLY232 HIS233 ALA234 ALA235 GLU236 ARG237 MET238 ASN239 GLN240 LEU241 LYS242 MET243 VAL244 LEU245 LYS246 LYS247 MET248 GLN249 GLU250 ALA251 PRO252 GLU253 SER254 ALA255 THR256 VAL257 ILE258 PHE259 ALA260 GLY261 ASP262 THR263 ASN264 LEU265 ARG266 ASP267 ARG268 GLU269 VAL270 THR271 ARG272 CYS273 GLY274 GLY275 LEU276 PRO277 ASN278 ASN279 ILE280 VAL281 ASP282 VAL283 TRP284 GLU285 PHE286 LEU287 GLY288 LYS289 PRO290 LYS291 HIS292 CYS293 GLN294 TYR295 THR296 TRP297 ASP298 THR299 GLN300 MET301 ASN302 SER303 ASN304 LEU305 GLY306 ILE307 THR308 ALA309 ALA310 CYS311 LYS312 LEU313 ARG314 PHE315 ASP316 ARG317 ILE318 PHE319 PHE320 ARG321 ALA322 ALA323 ALA324 GLU326 GLY327 HIS328 ILE329 ILE330 PRO331 ARG332 SER333 LEU334 ASP335 LEU336 LEU337 GLY338 LEU339 GLU340 LYS341 LEU342 ASP343 CYS344 GLY345 ARG346 PHE347 PRO348 SER349 ASP350 HIS351 TRP352 GLY353 LEU354 LEU355 CYS356 ASN357 LEU358 ASP359 ILE360 ILE361
Unit 3 GLY111 SER112 MET113 PHE114 SER115 LEU116 ILE117 THR118 TRP119 ASN120 ILE121 ASP122 GLY123 LEU124 ASP125 LEU126 ASN127 ASN128 LEU129 SER130 GLU131 ARG132 ALA133 ARG134 GLY135 VAL136 CYS137 SER138 TYR139 LEU140 ALA141 LEU142 TYR143 SER144 PRO145 ASP146 VAL147 ILE148 PHE149 LEU150 GLN151 GLU152 VAL153 ILE154 PRO155 PRO156 TYR157 TYR158 SER159 TYR160 LEU161 LYS162 LYS163 ARG164 SER165 SER166 ASN167 TYR168 GLU169 ILE170 ILE171 THR172 GLY173 HIS174 GLU175 GLU176 GLY177 TYR178 PHE179 THR180 ALA181 ILE182 MET183 LEU184 LYS185 LYS186 SER187 ARG188 VAL189 LYS190 LEU191 LYS192 SER193 GLN194 GLU195 ILE196 ILE197 PRO198 PHE199 PRO200 SER201 THR202 LYS203 MET204 MET205 ARG206 ASN207 LEU208 LEU209 CYS210 VAL211 HIS212 VAL213 ASN214 VAL215 SER216 GLY217 ASN218 GLU219 LEU220 CYS221 LEU222 MET223 THR224 SER225 HIS226 LEU227 GLU228 SER229 THR230 ARG231 GLY232 HIS233 ALA234 ALA235 GLU236 ARG237 MET238 ASN239 GLN240 LEU241 LYS242 MET243 VAL244 LEU245 LYS246 LYS247 MET248 GLN249 GLU250 ALA251 PRO252 GLU253 SER254 ALA255 THR256 VAL257 ILE258 PHE259 ALA260 GLY261 ASP262 THR263 ASN264 LEU265 ARG266 ASP267 ARG268 GLU269 VAL270 THR271 ARG272 CYS273 GLY274 GLY275 LEU276 PRO277 ASN278 ASN279 ILE280 VAL281 ASP282 VAL283 TRP284 GLU285 PHE286 LEU287 GLY288 LYS289 PRO290 LYS291 HIS292 CYS293 GLN294 TYR295 THR296 TRP297 ASP298 THR299 GLN300 MET301 ASN302 SER303 ASN304 LEU305 GLY306 ILE307 THR308 ALA309 ALA310 CYS311 LYS312 LEU313 ARG314 PHE315 ASP316 ARG317 ILE318 PHE319 PHE320 ARG321 ALA322 ALA323 GLU326 GLY327 HIS328 ILE329 ILE330 PRO331 ARG332 SER333 LEU334 ASP335 LEU336 LEU337 GLY338 LEU339 GLU340 LYS341 LEU342 ASP343 CYS344 GLY345 ARG346 PHE347 PRO348 SER349 ASP350 HIS351 TRP352 GLY353 LEU354 LEU355 CYS356 ASN357 LEU358 ASP359 ILE360
Other macromolecules
Unit 2 DC1 DC2 DG3 DA4 DA5 DT6 DT7 DC8 DG9
Unit 4 DC1 DC2 DG3 DA4 DA5 DT6 DT7 DC8 DG9
Ligands
Unit 5 SO4401
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany