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Sequence, Chains, Asymmetric and Biological Units

Title THE CRYSTAL STRUCTURE OF MOUSE TLR4/MD-2/LIPID A COMPLEX
Keywords IMMUNE RESPONSE, PROTEIN COMPLEX, NATURAL AGONIST, IMMUNE SY
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5IJD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TOLL-LIKE RECEPTOR 4, VARIABLE LYMPHOCYTE RECEPTO CHIMERA  A 590 4700 0
2  Protein   LYMPHOCYTE ANTIGEN 96  C 137 1112 0
3  Protein   LYMPHOCYTE ANTIGEN 96  D 137 1112 0
4  Protein   TOLL-LIKE RECEPTOR 4, VARIABLE LYMPHOCYTE RECEPTO CHIMERA  B 592 4713 0
5  Ligand    E 2 0 28
6  Ligand    F 2 0 28
7  Ligand    G 2 0 28
8  Ligand    H 2 0 28
9  Ligand    I 2 0 28
10  Ligand    J 2 0 28
11  Ligand    K 2 0 28
12  Ligand   TOLL-LIKE RECEPTOR 4, VARIABLE LYMPHOCYTE RECEPTO CHIMERA  A 2 0 28
13  Ligand   LYMPHOCYTE ANTIGEN 96  C 5 0 135
14  Ligand   LYMPHOCYTE ANTIGEN 96  D 5 0 135
15  Ligand   TOLL-LIKE RECEPTOR 4, VARIABLE LYMPHOCYTE RECEPTO CHIMERA  B 1 0 14
16 Water     232 0 232
total       1715 11637 740
Proteins
Unit 1 ILE29 GLU30 VAL31 VAL32 PRO33 ASN34 ILE35 THR36 TYR37 GLN38 CYS39 MET40 ASP41 GLN42 LYS43 LEU44 SER45 LYS46 VAL47 PRO48 ASP49 ASP50 ILE51 PRO52 SER53 SER54 THR55 LYS56 ASN57 ILE58 ASP59 LEU60 SER61 PHE62 ASN63 PRO64 LEU65 LYS66 ILE67 LEU68 LYS69 SER70 TYR71 SER72 PHE73 SER74 ASN75 PHE76 SER77 GLU78 LEU79 GLN80 TRP81 LEU82 ASP83 LEU84 SER85 ARG86 CYS87 GLU88 ILE89 GLU90 THR91 ILE92 GLU93 ASP94 LYS95 ALA96 TRP97 HIS98 GLY99 LEU100 HIS101 HIS102 LEU103 SER104 ASN105 LEU106 ILE107 LEU108 THR109 GLY110 ASN111 PRO112 ILE113 GLN114 SER115 PHE116 SER117 PRO118 GLY119 SER120 PHE121 SER122 GLY123 LEU124 THR125 SER126 LEU127 GLU128 ASN129 LEU130 VAL131 ALA132 VAL133 GLU134 THR135 LYS136 LEU137 ALA138 SER139 LEU140 GLU141 SER142 PHE143 PRO144 ILE145 GLY146 GLN147 LEU148 ILE149 THR150 LEU151 LYS152 LYS153 LEU154 ASN155 VAL156 ALA157 HIS158 ASN159 PHE160 ILE161 HIS162 SER163 CYS164 LYS165 LEU166 PRO167 ALA168 TYR169 PHE170 SER171 ASN172 LEU173 THR174 ASN175 LEU176 VAL177 HIS178 VAL179 ASP180 LEU181 SER182 TYR183 ASN184 TYR185 ILE186 GLN187 THR188 ILE189 THR190 VAL191 ASN192 ASP193 LEU194 GLN195 PHE196 LEU197 ARG198 GLU199 ASN200 PRO201 GLN202 VAL203 ASN204 LEU205 SER206 LEU207 ASP208 MET209 SER210 LEU211 ASN212 PRO213 ILE214 ASP215 PHE216 ILE217 GLN218 ASP219 GLN220 ALA221 PHE222 GLN223 GLY224 ILE225 LYS226 LEU227 HIS228 GLU229 LEU230 THR231 LEU232 ARG233 GLY234 ASN235 PHE236 ASN237 SER238 SER239 ASN240 ILE241 MET242 LYS243 THR244 CYS245 LEU246 GLN247 ASN248 LEU249 ALA250 GLY251 LEU252 HIS253 VAL254 HIS255 ARG256 LEU257 ILE258 LEU259 GLY260 GLU261 PHE262 LYS263 ASP264 GLU265 ARG266 ASN267 LEU268 GLU269 ILE270 PHE271 GLU272 PRO273 SER274 ILE275 MET276 GLU277 GLY278 LEU279 CYS280 ASP281 VAL282 THR283 ILE284 ASP285 GLU286 PHE287 ARG288 LEU289 THR290 TYR291 THR292 ASN293 ASP294 PHE295 SER296 ASP297 ASP298 ILE299 VAL300 LYS301 PHE302 HIS303 CYS304 LEU305 ALA306 ASN307 VAL308 SER309 ALA310 MET311 SER312 LEU313 ALA314 GLY315 VAL316 SER317 ILE318 LYS319 TYR320 LEU321 GLU322 ASP323 VAL324 PRO325 LYS326 HIS327 PHE328 LYS329 TRP330 GLN331 SER332 LEU333 SER334 ILE335 ILE336 ARG337 CYS338 GLN339 LEU340 LYS341 GLN342 PHE343 PRO344 THR345 LEU346 ASP347 LEU348 PRO349 PHE350 LEU351 LYS352 SER353 LEU354 THR355 LEU356 THR357 MET358 ASN359 LYS360 GLY361 SER362 ILE363 SER364 PHE365 LYS366 LYS367 VAL368 ALA369 LEU370 PRO371 SER372 LEU373 SER374 TYR375 LEU376 ASP377 LEU378 SER379 ARG380 ASN381 ALA382 LEU383 SER384 PHE385 SER386 GLY387 CYS388 CYS389 SER390 TYR391 SER392 ASP393 LEU394 GLY395 THR396 ASN397 SER398 LEU399 ARG400 HIS401 LEU402 ASP403 LEU404 SER405 PHE406 ASN407 GLY408 ALA409 ILE410 ILE411 MET412 SER413 ALA414 ASN415 PHE416 MET417 GLY418 LEU419 GLU420 GLU421 LEU422 GLN423 HIS424 LEU425 ASP426 PHE427 GLN428 HIS429 SER430 THR431 LEU432 LYS433 ARG434 VAL435 THR436 GLU437 PHE438 SER439 ALA440 PHE441 LEU442 SER443 LEU444 GLU445 LYS446 LEU447 LEU448 TYR449 LEU450 ASP451 ILE452 SER453 TYR454 THR455 ASN456 THR457 LYS458 ILE459 ASP460 PHE461 ASP462 GLY463 ILE464 PHE465 LEU466 GLY467 LEU468 THR469 SER470 LEU471 ASN472 THR473 LEU474 LYS475 MET476 ALA477 GLY478 ASN479 SER480 PHE481 LYS482 ASP483 ASN484 THR485 LEU486 SER487 ASN488 VAL489 PHE490 ALA491 ASN492 THR493 THR494 ASN495 LEU496 THR497 PHE498 LEU499 ASP500 LEU501 SER502 LYS503 CYS504 GLN505 LEU506 GLU507 GLN508 ILE509 SER510 TRP511 GLY512 VAL513 PHE514 ASP515 THR516 LEU517 HIS518 ARG519 LEU520 GLN521 LEU522 LEU523 ASN524 MET525 SER526 HIS527 ASN528 ASN529 LEU530 LEU531 PHE532 LEU533 ASP534 SER535 SER536 HIS537 TYR538 ASN539 GLN540 LEU541 TYR542 SER543 LEU544 LYS545 GLU546 LEU547 ALA548 LEU549 ASP550 THR551 ASN552 GLN553 LEU554 LYS555 SER556 VAL557 PRO558 ASP559 GLY560 ILE561 PHE562 ASP563 ARG564 LEU565 THR566 SER567 LEU568 GLN569 LYS570 ILE571 TRP572 LEU573 HIS574 THR575 ASN576 PRO577 TRP578 ASP579 CYS580 SER581 CYS582 PRO583 ARG584 ILE585 ASP586 TYR587 LEU588 SER589 ARG590 TRP591 LEU592 ASN593 LYS594 ASN595 SER596 GLN597 LYS598 GLU599 GLN600 GLY601 SER602 ALA603 LYS604 CYS605 SER606 GLY607 SER608 GLY609 LYS610 PRO611 VAL612 ARG613 SER614 ILE615 ILE616 CYS617 PRO618
Unit 2 LYS20 GLN21 GLN22 TRP23 PHE24 CYS25 ASN26 SER27 SER28 ASP29 ALA30 ILE31 ILE32 SER33 TYR34 SER35 TYR36 CYS37 ASP38 HIS39 LEU40 LYS41 PHE42 PRO43 ILE44 SER45 ILE46 SER47 SER48 GLU49 PRO50 CYS51 ILE52 ARG53 LEU54 ARG55 GLY56 THR57 ASN58 GLY59 PHE60 VAL61 HIS62 VAL63 GLU64 PHE65 ILE66 PRO67 ARG68 GLY69 ASN70 LEU71 LYS72 TYR73 LEU74 TYR75 PHE76 ASN77 LEU78 PHE79 ILE80 SER81 VAL82 ASN83 SER84 ILE85 GLU86 LEU87 PRO88 LYS89 ARG90 LYS91 GLU92 VAL93 LEU94 CYS95 HIS96 GLY97 HIS98 ASP99 ASP100 ASP101 TYR102 SER103 PHE104 CYS105 ARG106 ALA107 LEU108 LYS109 GLY110 GLU111 THR112 VAL113 ASN114 THR115 SER116 ILE117 PRO118 PHE119 SER120 PHE121 GLU122 GLY123 ILE124 LEU125 PHE126 PRO127 LYS128 GLY129 HIS130 TYR131 ARG132 CYS133 VAL134 ALA135 GLU136 ALA137 ILE138 ALA139 GLY140 ASP141 THR142 GLU143 GLU144 LYS145 LEU146 PHE147 CYS148 LEU149 ASN150 PHE151 THR152 ILE153 ILE154 HIS155 ARG156
Unit 3 LYS20 GLN21 GLN22 TRP23 PHE24 CYS25 ASN26 SER27 SER28 ASP29 ALA30 ILE31 ILE32 SER33 TYR34 SER35 TYR36 CYS37 ASP38 HIS39 LEU40 LYS41 PHE42 PRO43 ILE44 SER45 ILE46 SER47 SER48 GLU49 PRO50 CYS51 ILE52 ARG53 LEU54 ARG55 GLY56 THR57 ASN58 GLY59 PHE60 VAL61 HIS62 VAL63 GLU64 PHE65 ILE66 PRO67 ARG68 GLY69 ASN70 LEU71 LYS72 TYR73 LEU74 TYR75 PHE76 ASN77 LEU78 PHE79 ILE80 SER81 VAL82 ASN83 SER84 ILE85 GLU86 LEU87 PRO88 LYS89 ARG90 LYS91 GLU92 VAL93 LEU94 CYS95 HIS96 GLY97 HIS98 ASP99 ASP100 ASP101 TYR102 SER103 PHE104 CYS105 ARG106 ALA107 LEU108 LYS109 GLY110 GLU111 THR112 VAL113 ASN114 THR115 SER116 ILE117 PRO118 PHE119 SER120 PHE121 GLU122 GLY123 ILE124 LEU125 PHE126 PRO127 LYS128 GLY129 HIS130 TYR131 ARG132 CYS133 VAL134 ALA135 GLU136 ALA137 ILE138 ALA139 GLY140 ASP141 THR142 GLU143 GLU144 LYS145 LEU146 PHE147 CYS148 LEU149 ASN150 PHE151 THR152 ILE153 ILE154 HIS155 ARG156
Unit 4 PRO27 CYS28 ILE29 GLU30 VAL31 VAL32 PRO33 ASN34 ILE35 THR36 TYR37 GLN38 CYS39 MET40 ASP41 GLN42 LYS43 LEU44 SER45 LYS46 VAL47 PRO48 ASP49 ASP50 ILE51 PRO52 SER53 SER54 THR55 LYS56 ASN57 ILE58 ASP59 LEU60 SER61 PHE62 ASN63 PRO64 LEU65 LYS66 ILE67 LEU68 LYS69 SER70 TYR71 SER72 PHE73 SER74 ASN75 PHE76 SER77 GLU78 LEU79 GLN80 TRP81 LEU82 ASP83 LEU84 SER85 ARG86 CYS87 GLU88 ILE89 GLU90 THR91 ILE92 GLU93 ASP94 LYS95 ALA96 TRP97 HIS98 GLY99 LEU100 HIS101 HIS102 LEU103 SER104 ASN105 LEU106 ILE107 LEU108 THR109 GLY110 ASN111 PRO112 ILE113 GLN114 SER115 PHE116 SER117 PRO118 GLY119 SER120 PHE121 SER122 GLY123 LEU124 THR125 SER126 LEU127 GLU128 ASN129 LEU130 VAL131 ALA132 VAL133 GLU134 THR135 LYS136 LEU137 ALA138 SER139 LEU140 GLU141 SER142 PHE143 PRO144 ILE145 GLY146 GLN147 LEU148 ILE149 THR150 LEU151 LYS152 LYS153 LEU154 ASN155 VAL156 ALA157 HIS158 ASN159 PHE160 ILE161 HIS162 SER163 CYS164 LYS165 LEU166 PRO167 ALA168 TYR169 PHE170 SER171 ASN172 LEU173 THR174 ASN175 LEU176 VAL177 HIS178 VAL179 ASP180 LEU181 SER182 TYR183 ASN184 TYR185 ILE186 GLN187 THR188 ILE189 THR190 VAL191 ASN192 ASP193 LEU194 GLN195 PHE196 LEU197 ARG198 GLU199 ASN200 PRO201 GLN202 VAL203 ASN204 LEU205 SER206 LEU207 ASP208 MET209 SER210 LEU211 ASN212 PRO213 ILE214 ASP215 PHE216 ILE217 GLN218 ASP219 GLN220 ALA221 PHE222 GLN223 GLY224 ILE225 LYS226 LEU227 HIS228 GLU229 LEU230 THR231 LEU232 ARG233 GLY234 ASN235 PHE236 ASN237 SER238 SER239 ASN240 ILE241 MET242 LYS243 THR244 CYS245 LEU246 GLN247 ASN248 LEU249 ALA250 GLY251 LEU252 HIS253 VAL254 HIS255 ARG256 LEU257 ILE258 LEU259 GLY260 GLU261 PHE262 LYS263 ASP264 GLU265 ARG266 ASN267 LEU268 GLU269 ILE270 PHE271 GLU272 PRO273 SER274 ILE275 MET276 GLU277 GLY278 LEU279 CYS280 ASP281 VAL282 THR283 ILE284 ASP285 GLU286 PHE287 ARG288 LEU289 THR290 TYR291 THR292 ASN293 ASP294 PHE295 SER296 ASP297 ASP298 ILE299 VAL300 LYS301 PHE302 HIS303 CYS304 LEU305 ALA306 ASN307 VAL308 SER309 ALA310 MET311 SER312 LEU313 ALA314 GLY315 VAL316 SER317 ILE318 LYS319 TYR320 LEU321 GLU322 ASP323 VAL324 PRO325 LYS326 HIS327 PHE328 LYS329 TRP330 GLN331 SER332 LEU333 SER334 ILE335 ILE336 ARG337 CYS338 GLN339 LEU340 LYS341 GLN342 PHE343 PRO344 THR345 LEU346 ASP347 LEU348 PRO349 PHE350 LEU351 LYS352 SER353 LEU354 THR355 LEU356 THR357 MET358 ASN359 LYS360 GLY361 SER362 ILE363 SER364 PHE365 LYS366 LYS367 VAL368 ALA369 LEU370 PRO371 SER372 LEU373 SER374 TYR375 LEU376 ASP377 LEU378 SER379 ARG380 ASN381 ALA382 LEU383 SER384 PHE385 SER386 GLY387 CYS388 CYS389 SER390 TYR391 SER392 ASP393 LEU394 GLY395 THR396 ASN397 SER398 LEU399 ARG400 HIS401 LEU402 ASP403 LEU404 SER405 PHE406 ASN407 GLY408 ALA409 ILE410 ILE411 MET412 SER413 ALA414 ASN415 PHE416 MET417 GLY418 LEU419 GLU420 GLU421 LEU422 GLN423 HIS424 LEU425 ASP426 PHE427 GLN428 HIS429 SER430 THR431 LEU432 LYS433 ARG434 VAL435 THR436 GLU437 PHE438 SER439 ALA440 PHE441 LEU442 SER443 LEU444 GLU445 LYS446 LEU447 LEU448 TYR449 LEU450 ASP451 ILE452 SER453 TYR454 THR455 ASN456 THR457 LYS458 ILE459 ASP460 PHE461 ASP462 GLY463 ILE464 PHE465 LEU466 GLY467 LEU468 THR469 SER470 LEU471 ASN472 THR473 LEU474 LYS475 MET476 ALA477 GLY478 ASN479 SER480 PHE481 LYS482 ASP483 ASN484 THR485 LEU486 SER487 ASN488 VAL489 PHE490 ALA491 ASN492 THR493 THR494 ASN495 LEU496 THR497 PHE498 LEU499 ASP500 LEU501 SER502 LYS503 CYS504 GLN505 LEU506 GLU507 GLN508 ILE509 SER510 TRP511 GLY512 VAL513 PHE514 ASP515 THR516 LEU517 HIS518 ARG519 LEU520 GLN521 LEU522 LEU523 ASN524 MET525 SER526 HIS527 ASN528 ASN529 LEU530 LEU531 PHE532 LEU533 ASP534 SER535 SER536 HIS537 TYR538 ASN539 GLN540 LEU541 TYR542 SER543 LEU544 LYS545 GLU546 LEU547 ALA548 LEU549 ASP550 THR551 ASN552 GLN553 LEU554 LYS555 SER556 VAL557 PRO558 ASP559 GLY560 ILE561 PHE562 ASP563 ARG564 LEU565 THR566 SER567 LEU568 GLN569 LYS570 ILE571 TRP572 LEU573 HIS574 THR575 ASN576 PRO577 TRP578 ASP579 CYS580 SER581 CYS582 PRO583 ARG584 ILE585 ASP586 TYR587 LEU588 SER589 ARG590 TRP591 LEU592 ASN593 LYS594 ASN595 SER596 GLN597 LYS598 GLU599 GLN600 GLY601 SER602 ALA603 LYS604 CYS605 SER606 GLY607 SER608 GLY609 LYS610 PRO611 VAL612 ARG613 SER614 ILE615 ILE616 CYS617 PRO618
Ligands
Unit 5 NAG1 NAG2
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 NAG1 NAG2
Unit 10 NAG1 NAG2
Unit 11 NAG1 NAG2
Unit 12 NAG703 NAG704
Unit 13 NAG201 LP4204 LP5205 DAO206 MYR207
Unit 14 NAG803 LP4804 LP5805 DAO806 MYR807
Unit 15 NAG705
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany