5IDK - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF WEST NILE VIRUS NS2B-NS3 PROTEASE IN CO A CAPPED DIPEPTIDE BORONATE INHIBITOR
• Keywords: ANTIVIRUS AGENTS, PEPTIDES, WEST NILE VIRUS, BORONIC ACID, V PROTEIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5IDK	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	GENOME POLYPROTEIN,SERINE PROTEASE SUBUNIT NS2B, PROTEASE NS3	A	204	1551	0
2	Protein	GENOME POLYPROTEIN,SERINE PROTEASE SUBUNIT NS2B, PROTEASE NS3	B	204	1556	0
3	Protein	GENOME POLYPROTEIN,SERINE PROTEASE SUBUNIT NS2B, PROTEASE NS3	C	205	1565	0
4	Ligand	GENOME POLYPROTEIN,SERINE PROTEASE SUBUNIT NS2B, PROTEASE NS3	A	1	0	37
5	Ligand	GENOME POLYPROTEIN,SERINE PROTEASE SUBUNIT NS2B, PROTEASE NS3	B	2	0	41
6	Ligand	GENOME POLYPROTEIN,SERINE PROTEASE SUBUNIT NS2B, PROTEASE NS3	C	2	0	43
7	Water			637	0	637
total				1255	4672	758

Proteins

Unit 1	ASP 51 MET 52 TRP 53 ILE 54 GLU 55 ARG 56 THR 57 ALA 58 ASP 59 ILE 60 THR 61 TRP 62 GLU 63 SER 64 ASP 65 ALA 66 GLU 67 ILE 68 THR 69 GLY 70 SER 71 SER 72 GLU 73 ARG 74 VAL 75 ASP 76 VAL 77 ARG 78 LEU 79 ASP 80 ASP 81 ASP 82 GLY 83 ASN 84 PHE 85 GLN 86 LEU 87 MET 88 GLY 1001 GLY 1002 VAL 1003 LEU 1004 TRP 1005 ASP 1006 THR 1007 PRO 1008 SER 1009 PRO 1010 LYS 1014 LYS 1015 GLY 1016 ASP 1017 THR 1018 THR 1019 THR 1020 GLY 1021 VAL 1022 TYR 1023 ARG 1024 ILE 1025 MET 1026 THR 1027 ARG 1028 GLY 1029 LEU 1030 LEU 1031 GLY 1032 SER 1033 TYR 1034 GLN 1035 ALA 1036 GLY 1037 ALA 1038 GLY 1039 VAL 1040 MET 1041 VAL 1042 GLU 1043 GLY 1044 VAL 1045 PHE 1046 HIS 1047 THR 1048 LEU 1049 TRP 1050 HIS 1051 THR 1052 THR 1053 LYS 1054 GLY 1055 ALA 1056 ALA 1057 LEU 1058 MET 1059 SER 1060 GLY 1061 GLU 1062 GLY 1063 ARG 1064 LEU 1065 ASP 1066 PRO 1067 TYR 1068 TRP 1069 GLY 1070 SER 1071 VAL 1072 LYS 1073 GLU 1074 ASP 1075 ARG 1076 LEU 1077 CYS 1078 TYR 1079 GLY 1080 GLY 1081 PRO 1082 TRP 1083 LYS 1084 LEU 1085 GLN 1086 HIS 1087 LYS 1088 TRP 1089 ASN 1090 GLY 1091 HIS 1092 ASP 1093 GLU 1094 VAL 1095 GLN 1096 MET 1097 ILE 1098 VAL 1099 VAL 1100 GLU 1101 PRO 1102 GLY 1103 LYS 1104 ASN 1105 VAL 1106 LYS 1107 ASN 1108 VAL 1109 GLN 1110 THR 1111 LYS 1112 PRO 1113 GLY 1114 VAL 1115 PHE 1116 LYS 1117 THR 1118 PRO 1119 GLU 1120 GLY 1121 GLU 1122 ILE 1123 GLY 1124 ALA 1125 VAL 1126 THR 1127 LEU 1128 ASP 1129 TYR 1130 PRO 1131 THR 1132 GLY 1133 THR 1134 SER 1135 GLY 1136 SER 1137 PRO 1138 ILE 1139 VAL 1140 ASP 1141 LYS 1142 ASN 1143 GLY 1144 ASP 1145 VAL 1146 ILE 1147 GLY 1148 LEU 1149 TYR 1150 GLY 1151 ASN 1152 GLY 1153 VAL 1154 ILE 1155 MET 1156 PRO 1157 ASN 1158 GLY 1159 SER 1160 TYR 1161 ILE 1162 SER 1163 ALA 1164 ILE 1165 VAL 1166 GLN 1167 GLY 1168 GLU 1169
Unit 2	THR 50 ASP 51 MET 52 TRP 53 ILE 54 GLU 55 ARG 56 THR 57 ALA 58 ASP 59 ILE 60 THR 61 TRP 62 GLU 63 SER 64 ASP 65 ALA 66 GLU 67 ILE 68 THR 69 GLY 70 SER 71 SER 72 GLU 73 ARG 74 VAL 75 ASP 76 VAL 77 ARG 78 LEU 79 ASP 80 ASP 81 ASP 82 GLY 83 ASN 84 PHE 85 GLN 86 LEU 87 MET 88 GLY 1001 GLY 1002 VAL 1003 LEU 1004 TRP 1005 ASP 1006 THR 1007 GLU 1012 TYR 1013 LYS 1014 LYS 1015 GLY 1016 ASP 1017 THR 1018 THR 1019 THR 1020 GLY 1021 VAL 1022 TYR 1023 ARG 1024 ILE 1025 MET 1026 THR 1027 ARG 1028 GLY 1029 LEU 1030 LEU 1031 GLY 1032 SER 1033 TYR 1034 GLN 1035 ALA 1036 GLY 1037 ALA 1038 GLY 1039 VAL 1040 MET 1041 VAL 1042 GLU 1043 GLY 1044 VAL 1045 PHE 1046 HIS 1047 THR 1048 LEU 1049 TRP 1050 HIS 1051 THR 1052 THR 1053 LYS 1054 GLY 1055 ALA 1056 ALA 1057 LEU 1058 MET 1059 SER 1060 GLY 1061 GLU 1062 GLY 1063 ARG 1064 LEU 1065 ASP 1066 PRO 1067 TYR 1068 TRP 1069 GLY 1070 SER 1071 VAL 1072 LYS 1073 GLU 1074 ASP 1075 ARG 1076 LEU 1077 CYS 1078 TYR 1079 GLY 1080 GLY 1081 PRO 1082 TRP 1083 LYS 1084 LEU 1085 GLN 1086 HIS 1087 LYS 1088 TRP 1089 ASN 1090 GLY 1091 HIS 1092 ASP 1093 GLU 1094 VAL 1095 GLN 1096 MET 1097 ILE 1098 VAL 1099 VAL 1100 GLU 1101 PRO 1102 GLY 1103 LYS 1104 ASN 1105 VAL 1106 LYS 1107 ASN 1108 VAL 1109 GLN 1110 THR 1111 LYS 1112 PRO 1113 GLY 1114 VAL 1115 PHE 1116 LYS 1117 THR 1118 PRO 1119 GLU 1120 GLY 1121 GLU 1122 ILE 1123 GLY 1124 ALA 1125 VAL 1126 THR 1127 LEU 1128 ASP 1129 TYR 1130 PRO 1131 THR 1132 GLY 1133 THR 1134 SER 1135 GLY 1136 SER 1137 PRO 1138 ILE 1139 VAL 1140 ASP 1141 LYS 1142 ASN 1143 GLY 1144 ASP 1145 VAL 1146 ILE 1147 GLY 1148 LEU 1149 TYR 1150 GLY 1151 ASN 1152 GLY 1153 VAL 1154 ILE 1155 MET 1156 PRO 1157 ASN 1158 GLY 1159 SER 1160 TYR 1161 ILE 1162 SER 1163 ALA 1164 ILE 1165 VAL 1166 GLN 1167 GLY 1168 GLU 1169
Unit 3	ASP 51 MET 52 TRP 53 ILE 54 GLU 55 ARG 56 THR 57 ALA 58 ASP 59 ILE 60 THR 61 TRP 62 GLU 63 SER 64 ASP 65 ALA 66 GLU 67 ILE 68 THR 69 GLY 70 SER 71 SER 72 GLU 73 ARG 74 VAL 75 ASP 76 VAL 77 ARG 78 LEU 79 ASP 80 ASP 81 ASP 82 GLY 83 ASN 84 PHE 85 GLN 86 LEU 87 MET 88 GLY 1001 GLY 1002 VAL 1003 LEU 1004 TRP 1005 ASP 1006 THR 1007 PRO 1008 LYS 1011 GLU 1012 TYR 1013 LYS 1014 LYS 1015 GLY 1016 ASP 1017 THR 1018 THR 1019 THR 1020 GLY 1021 VAL 1022 TYR 1023 ARG 1024 ILE 1025 MET 1026 THR 1027 ARG 1028 GLY 1029 LEU 1030 LEU 1031 GLY 1032 SER 1033 TYR 1034 GLN 1035 ALA 1036 GLY 1037 ALA 1038 GLY 1039 VAL 1040 MET 1041 VAL 1042 GLU 1043 GLY 1044 VAL 1045 PHE 1046 HIS 1047 THR 1048 LEU 1049 TRP 1050 HIS 1051 THR 1052 THR 1053 LYS 1054 GLY 1055 ALA 1056 ALA 1057 LEU 1058 MET 1059 SER 1060 GLY 1061 GLU 1062 GLY 1063 ARG 1064 LEU 1065 ASP 1066 PRO 1067 TYR 1068 TRP 1069 GLY 1070 SER 1071 VAL 1072 LYS 1073 GLU 1074 ASP 1075 ARG 1076 LEU 1077 CYS 1078 TYR 1079 GLY 1080 GLY 1081 PRO 1082 TRP 1083 LYS 1084 LEU 1085 GLN 1086 HIS 1087 LYS 1088 TRP 1089 ASN 1090 GLY 1091 HIS 1092 ASP 1093 GLU 1094 VAL 1095 GLN 1096 MET 1097 ILE 1098 VAL 1099 VAL 1100 GLU 1101 PRO 1102 GLY 1103 LYS 1104 ASN 1105 VAL 1106 LYS 1107 ASN 1108 VAL 1109 GLN 1110 THR 1111 LYS 1112 PRO 1113 GLY 1114 VAL 1115 PHE 1116 LYS 1117 THR 1118 PRO 1119 GLU 1120 GLY 1121 GLU 1122 ILE 1123 GLY 1124 ALA 1125 VAL 1126 THR 1127 LEU 1128 ASP 1129 TYR 1130 PRO 1131 THR 1132 GLY 1133 THR 1134 SER 1135 GLY 1136 SER 1137 PRO 1138 ILE 1139 VAL 1140 ASP 1141 LYS 1142 ASN 1143 GLY 1144 ASP 1145 VAL 1146 ILE 1147 GLY 1148 LEU 1149 TYR 1150 GLY 1151 ASN 1152 GLY 1153 VAL 1154 ILE 1155 MET 1156 PRO 1157 ASN 1158 GLY 1159 SER 1160 TYR 1161 ILE 1162 SER 1163 ALA 1164 ILE 1165 VAL 1166 GLN 1167 GLY 1168 GLU 1169

Ligands

Unit 4	6A8 1201
Unit 5	6A8 1201 DMS 1202
Unit 6	6A8 1201 GOL 1202