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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF CPF1/RNA COMPLEX
Keywords HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5ID6     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CPF1  A 1209 9797 152
2  RNA    G 21 443 0
3  Ligand   CPF1  A 1 0 1
4  Ligand   RNA (5'- R(P*AP*AP*UP*UP*UP*CP*UP*AP*CP*UP*AP*AP*GP*UP*GP*UP*AP*GP*A 3')  G 1 0 1
5 Water     6 0 6
total       1238 10240 160
Proteins
Unit 1 ALA0 ALA1 SER2 LYS3 LEU4 GLU5 LYS6 PHE7 THR8 ASN9 CYS10 TYR11 SER12 LEU13 SER14 LYS15 THR16 LEU17 ARG18 PHE19 LYS20 ALA21 ILE22 PRO23 VAL24 GLY25 LYS26 THR27 GLN28 GLU29 ASN30 ILE31 ASP32 ASN33 LYS34 ARG35 LEU36 LEU37 VAL38 GLU39 ASP40 GLU41 LYS42 ARG43 ALA44 GLU45 ASP46 TYR47 LYS48 GLY49 VAL50 LYS51 LYS52 LEU53 LEU54 ASP55 ARG56 TYR57 TYR58 LEU59 SER60 PHE61 ILE62 ASN63 ASP64 VAL65 LEU66 HIS67 SER68 ILE69 LYS70 LEU71 LYS72 ASN73 LEU74 ASN75 ASN76 TYR77 ILE78 SER79 LEU80 PHE81 ARG82 LYS83 LYS84 THR85 ARG86 THR87 GLU88 LYS89 GLU90 ASN91 LYS92 GLU93 LEU94 GLU95 ASN96 LEU97 GLU98 ILE99 ASN100 LEU101 ARG102 LYS103 GLU104 ILE105 ALA106 LYS107 ALA108 PHE109 LYS110 GLY111 ALA112 ALA113 GLY114 TYR115 LYS116 SER117 LEU118 PHE119 LYS120 LYS121 ASP122 ILE123 ILE124 GLU125 THR126 ILE127 LEU128 PRO129 GLU130 ALA131 ALA132 LYS135 ASP136 GLU137 ILE138 ALA139 LEU140 VAL141 ASN142 SER143 PHE144 ASN145 GLY146 PHE147 THR148 THR149 ALA150 PHE151 THR152 GLY153 PHE154 PHE155 ASP156 ASN157 ARG158 GLU159 ASN160 MSE161 PHE162 SER163 GLU164 GLU165 ALA166 LYS167 SER168 THR169 SER170 ILE171 ALA172 PHE173 ARG174 CYS175 ILE176 ASN177 GLU178 ASN179 LEU180 THR181 ARG182 TYR183 ILE184 SER185 ASN186 MSE187 ASP188 ILE189 PHE190 GLU191 LYS192 VAL193 ASP194 ALA195 ILE196 PHE197 ASP198 LYS199 HIS200 GLU201 VAL202 GLN203 GLU204 ILE205 LYS206 GLU207 LYS208 ILE209 LEU210 ASN211 SER212 ASP213 TYR214 ASP215 VAL216 GLU217 ASP218 PHE219 PHE220 GLU221 GLY222 GLU223 PHE224 PHE225 ASN226 PHE227 VAL228 LEU229 THR230 GLN231 GLU232 GLY233 ILE234 ASP235 VAL236 TYR237 ASN238 ALA239 ILE240 ILE241 GLY242 GLY243 PHE244 VAL245 THR246 GLU247 SER248 GLY249 GLU250 LYS251 ILE252 LYS253 GLY254 LEU255 ASN256 GLU257 TYR258 ILE259 ASN260 LEU261 TYR262 ASN263 ALA264 LYS265 THR266 LYS267 GLN268 ALA269 LEU270 PRO271 LYS272 PHE273 LYS274 PRO275 LEU276 TYR277 LYS278 GLN279 VAL280 GLU292 GLY293 TYR294 THR295 SER296 ASP297 GLU298 GLU299 VAL300 LEU301 GLU302 VAL303 PHE304 ARG305 ASN306 THR307 LEU308 ASN309 LYS310 ASN311 SER312 GLU313 ILE314 PHE315 SER316 SER317 ILE318 LYS319 LYS320 LEU321 GLU322 LYS323 LEU324 PHE325 LYS326 ASN327 PHE328 ASP329 GLU330 TYR331 SER332 SER333 ALA334 GLY335 ILE336 PHE337 VAL338 LYS339 ASN340 GLY341 PRO342 ALA343 ILE344 SER345 THR346 ILE347 SER348 LYS349 ASP350 ILE351 PHE352 GLY353 GLU354 TRP355 ASN356 LEU357 ILE358 ARG359 ASP360 LYS361 TRP362 ASN363 ALA364 GLU365 TYR366 ASP367 ASP368 ILE369 HIS370 LEU371 LYS372 LYS373 LYS374 ALA375 VAL376 VAL377 THR378 GLU379 LYS380 TYR381 GLU382 ASP383 ASP384 ARG385 ARG386 LYS387 SER388 PHE389 LYS390 LYS391 ILE392 GLY393 SER394 PHE395 SER396 LEU397 GLU398 GLN399 LEU400 GLN401 GLU402 TYR403 ALA404 ASP405 ALA406 ASP407 LEU408 SER409 VAL410 VAL411 GLU412 LYS413 LEU414 LYS415 GLU416 ILE417 ILE418 ILE419 GLN420 LYS421 VAL422 ASP423 GLU424 ILE425 TYR426 LYS427 VAL428 TYR429 GLY430 SER431 SER432 GLU433 LYS434 LEU435 PHE436 ASP437 ALA438 ASP439 PHE440 VAL441 LEU442 GLU443 LYS444 SER445 LEU446 LYS447 LYS448 ASN449 ASP450 ALA451 VAL452 VAL453 ALA454 ILE455 MSE456 LYS457 ASP458 LEU459 LEU460 ASP461 SER462 VAL463 LYS464 SER465 PHE466 GLU467 ASN468 TYR469 ILE470 LYS471 ALA472 PHE473 PHE474 GLY475 GLU476 GLY477 LYS478 GLU479 THR480 ASN481 ARG482 ASP483 GLU484 SER485 PHE486 TYR487 GLY488 ASP489 PHE490 VAL491 LEU492 ALA493 TYR494 ASP495 ILE496 LEU497 LEU498 LYS499 VAL500 ASP501 HIS502 ILE503 TYR504 ASP505 ALA506 ILE507 ARG508 ASN509 TYR510 VAL511 THR512 GLN513 LYS514 PRO515 TYR516 SER517 LYS518 ASP519 LYS520 PHE521 LYS522 LEU523 TYR524 PHE525 GLN526 ASN527 PRO528 GLN529 PHE530 MSE531 GLY532 GLY533 TRP534 ASP535 LYS536 ASP537 LYS538 GLU539 THR540 ASP541 TYR542 ARG543 ALA544 THR545 ILE546 LEU547 ARG548 TYR549 GLY550 SER551 LYS552 TYR553 TYR554 LEU555 ALA556 ILE557 MSE558 ASP559 LYS560 LYS561 TYR562 ALA563 LYS564 CYS565 LEU566 GLN567 LYS568 ILE569 ASP570 LYS571 ASP572 ASP573 VAL574 ASN575 GLY576 ASN577 TYR578 GLU579 LYS580 ILE581 ASN582 TYR583 LYS584 LEU585 LEU586 PRO587 GLY588 PRO589 ASN590 LYS591 MSE592 LEU593 PRO594 LYS595 VAL596 PHE597 PHE598 SER599 LYS600 LYS601 TRP602 MSE603 ALA604 TYR605 TYR606 ASN607 PRO608 SER609 GLU610 ASP611 ILE612 GLN613 LYS614 ILE615 TYR616 LYS617 ASN618 GLY619 THR620 PHE621 LYS622 LYS623 GLY624 ASP625 MSE626 PHE627 ASN628 LEU629 ASN630 ASP631 CYS632 HIS633 LYS634 LEU635 ILE636 ASP637 PHE638 PHE639 LYS640 ASP641 SER642 ILE643 SER644 ARG645 TYR646 PRO647 LYS648 TRP649 SER650 ASN651 ALA652 TYR653 ASP654 PHE655 ASN656 PHE657 SER658 GLU659 THR660 GLU661 LYS662 TYR663 LYS664 ASP665 ILE666 ALA667 GLY668 PHE669 TYR670 ARG671 GLU672 VAL673 GLU674 GLU675 GLN676 GLY677 TYR678 LYS679 VAL680 SER681 PHE682 GLU683 SER684 ALA685 SER686 LYS687 LYS688 GLU689 VAL690 ASP691 LYS692 LEU693 VAL694 GLU695 GLU696 GLY697 LYS698 LEU699 TYR700 MSE701 PHE702 GLN703 ILE704 TYR705 ASN706 LYS707 ASP708 PHE709 SER710 ASP711 LYS712 SER713 HIS714 GLY715 THR716 PRO717 ASN718 LEU719 HIS720 THR721 MSE722 TYR723 PHE724 LYS725 LEU726 LEU727 PHE728 ASP729 GLU730 ASN731 ASN732 HIS733 GLY734 GLN735 ILE736 ARG737 LEU738 SER739 GLY740 GLY741 ALA742 GLU743 LEU744 PHE745 MSE746 ARG747 ARG748 ALA749 SER750 LEU751 LYS752 LYS753 GLU754 GLU755 LEU756 VAL757 VAL758 HIS759 PRO760 ALA761 ASN762 SER763 PRO764 ILE765 ALA766 ASN767 LYS768 ASN769 PRO770 ASP771 ASN772 PRO773 LYS774 LYS775 THR776 THR777 THR778 LEU779 SER780 TYR781 ASP782 VAL783 TYR784 LYS785 ASP786 LYS787 ARG788 PHE789 SER790 GLU791 ASP792 GLN793 TYR794 GLU795 LEU796 HIS797 ILE798 PRO799 ILE800 ALA801 ILE802 ASN803 LYS804 CYS805 PRO806 LYS807 ASN808 ILE809 PHE810 LYS811 ILE812 ASN813 THR814 GLU815 VAL816 ARG817 VAL818 LEU819 LEU820 LYS821 HIS822 ASP823 ASP824 ASN825 PRO826 TYR827 VAL828 ILE829 GLY830 ILE831 ASP832 ARG833 GLY834 GLU835 ARG836 ASN837 LEU838 LEU839 TYR840 ILE841 VAL842 VAL843 VAL844 ASP845 GLY846 LYS847 GLY848 ASN849 ILE850 VAL851 GLU852 GLN853 TYR854 SER855 LEU856 ASN857 GLU858 ILE859 ILE860 ASN861 ASN862 PHE863 ASN864 GLY865 ILE866 ARG867 ILE868 LYS869 THR870 ASP871 TYR872 HIS873 SER874 LEU875 LEU876 ASP877 LYS878 LYS879 GLU880 LYS881 GLU882 ARG883 PHE884 GLU885 ALA886 ARG887 GLN888 ASN889 TRP890 THR891 SER892 ILE893 GLU894 ASN895 ILE896 LYS897 GLU898 LEU899 LYS900 ALA901 GLY902 TYR903 ILE904 SER905 GLN906 VAL907 VAL908 HIS909 LYS910 ILE911 CYS912 GLU913 LEU914 VAL915 GLU916 LYS917 TYR918 ASP919 ALA920 VAL921 ILE922 ALA923 LEU924 GLU925 ASP926 LEU927 ASN928 SER929 GLY930 PHE931 LYS932 ASN933 SER934 ARG935 VAL936 LYS937 VAL938 GLU939 LYS940 GLN941 VAL942 TYR943 GLN944 LYS945 PHE946 GLU947 LYS948 MSE949 LEU950 ILE951 ASP952 LYS953 LEU954 ASN955 TYR956 MSE957 VAL958 ASP959 LYS960 LYS961 SER962 ASN963 PRO964 CYS965 ALA966 THR967 GLY968 GLY969 ALA970 LEU971 LYS972 GLY973 TYR974 GLN975 ILE976 THR977 ASN978 LYS979 PHE980 GLU981 SER982 PHE983 LYS984 SER985 MSE986 SER987 THR988 GLN989 ASN990 GLY991 PHE992 ILE993 PHE994 TYR995 ILE996 PRO997 ALA998 TRP999 LEU1000 THR1001 SER1002 LYS1003 ILE1004 ASP1005 PRO1006 SER1007 THR1008 GLY1009 PHE1010 VAL1011 ASN1012 LEU1013 LEU1014 LYS1015 THR1016 LYS1017 TYR1018 THR1019 SER1020 ILE1021 ALA1022 ASP1023 SER1024 LYS1025 LYS1026 PHE1027 ILE1028 SER1029 SER1030 PHE1031 ASP1032 ARG1033 ILE1034 MSE1035 TYR1036 VAL1037 PRO1038 GLU1039 GLU1040 ASP1041 LEU1042 PHE1043 GLU1044 PHE1045 ALA1046 LEU1047 ASP1048 TYR1049 LYS1050 ASN1051 PHE1052 SER1053 ARG1054 THR1055 ASP1056 ALA1057 ASP1058 TYR1059 ILE1060 LYS1061 LYS1062 TRP1063 LYS1064 LEU1065 TYR1066 SER1067 TYR1068 GLY1069 ASN1070 ARG1071 ILE1072 ARG1073 ILE1074 PHE1075 ALA1076 ALA1077 ALA1078 ALA1085 TRP1086 GLU1087 GLU1088 VAL1089 CYS1090 LEU1091 THR1092 SER1093 ALA1094 TYR1095 LYS1096 GLU1097 LEU1098 PHE1099 ASN1100 LYS1101 TYR1102 GLY1103 ILE1104 ASN1105 TYR1106 GLN1107 GLN1108 GLY1109 ASP1110 ILE1111 ARG1112 ALA1113 LEU1114 LEU1115 CYS1116 GLU1117 GLN1118 SER1119 ASP1120 LYS1121 ALA1122 PHE1123 TYR1124 SER1125 SER1126 PHE1127 MSE1128 ALA1129 LEU1130 MSE1131 SER1132 LEU1133 MSE1134 LEU1135 GLN1136 MSE1137 ARG1138 ASN1139 SER1140 ILE1141 THR1142 GLY1143 ARG1144 THR1145 ASP1146 VAL1147 ASP1148 PHE1149 LEU1150 ILE1151 SER1152 PRO1153 VAL1154 LYS1155 ASN1156 SER1157 ASP1158 GLY1159 ILE1160 PHE1161 TYR1162 ASP1163 SER1164 ARG1165 ASN1166 TYR1167 GLU1168 ALA1169 GLN1170 GLU1171 ASN1172 ALA1173 ILE1174 LEU1175 PRO1176 LYS1177 ASN1178 ALA1179 ASP1180 ALA1181 ASN1182 GLY1183 ALA1184 TYR1185 ASN1186 ILE1187 ALA1188 ARG1189 LYS1190 VAL1191 LEU1192 TRP1193 ALA1194 ILE1195 GLY1196 GLN1197 PHE1198 LYS1199 LYS1200 ALA1201 GLU1202 ASP1203 GLU1204 LYS1205 LEU1206 ASP1207 LYS1208 VAL1209 LYS1210 ILE1211 ALA1212 ILE1213 SER1214 ASN1215 LYS1216 GLU1217 TRP1218 LEU1219 GLU1220 TYR1221 ALA1222 GLN1223 THR1224 SER1225 VAL1226 LYS1227
Nucleic acids
Unit 2 A3 A4 U5 U6 U7 C8 U9 A10 C11 U12 A13 A14 G15 U16 G17 U18 A19 G20 A21 U22 C23
Ligands
Unit 3 MG1301
Unit 4 MG101
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany