5HTO - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF PLASMODIUM VIVAX LDH IN COMPLEX WITH A APTAMER CALLED PL1 (TETRAMERIC LDH IN AN ASYMMETRIC UNIT)
• Keywords: LDH, MALARIA, DNA APTAMER, APTAMER, STRUCTURAL ELEMENT, OXIDOREDUCTASE-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5HTO	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	L-LACTATE DEHYDROGENASE	A	302	2281	0
2	Protein	L-LACTATE DEHYDROGENASE	B	303	2296	0
3	Other macromolecule	DNA (34-MER)	C	34	704	0
4	Protein	L-LACTATE DEHYDROGENASE	D	304	2297	0
5	Protein	L-LACTATE DEHYDROGENASE	E	305	2308	0
6	Other macromolecule	DNA (30-MER)	F	30	622	0
7	Ligand	DNA (34-MER)	C	1	0	1
8	Ligand	DNA (30-MER)	F	1	0	1
9	Water			898	0	898
total				2178	10508	900

Proteins

Unit 1	LYS 4 PRO 5 LYS 6 ILE 7 VAL 8 LEU 9 VAL 10 GLY 11 SER 12 GLY 13 MET 14 ILE 15 GLY 16 GLY 17 VAL 18 MET 19 ALA 20 THR 21 LEU 22 ILE 23 VAL 24 GLN 25 LYS 26 ASN 27 LEU 28 GLY 29 ASP 30 VAL 31 VAL 32 MET 33 PHE 34 ASP 35 VAL 36 VAL 37 LYS 38 ASN 39 MET 40 PRO 41 GLN 42 GLY 43 LYS 44 ALA 45 LEU 46 ASP 47 THR 48 SER 49 HIS 50 SER 51 ASN 52 VAL 53 MET 54 ALA 55 TYR 56 SER 57 ASN 58 CYS 59 LYS 60 VAL 61 THR 62 GLY 63 SER 64 ASN 65 SER 66 TYR 67 ASP 68 ASP 69 LEU 70 LYS 71 GLY 72 ALA 73 ASP 74 VAL 75 VAL 76 ILE 77 VAL 78 THR 79 ALA 80 GLY 81 PHE 82 THR 83 LYS 84 ALA 85 PRO 86 LEU 98 LEU 99 PRO 100 LEU 101 ASN 102 ASN 103 LYS 104 ILE 105 MET 106 ILE 107 GLU 108 ILE 109 GLY 110 GLY 111 HIS 112 ILE 113 LYS 114 ASN 115 LEU 116 CYS 117 PRO 118 ASN 119 ALA 120 PHE 121 ILE 122 ILE 123 VAL 124 VAL 125 THR 126 ASN 127 PRO 128 VAL 129 ASP 130 VAL 131 MET 132 VAL 133 GLN 134 LEU 135 LEU 136 PHE 137 GLU 138 HIS 139 SER 140 GLY 141 VAL 142 PRO 143 LYS 144 ASN 145 LYS 146 ILE 147 ILE 148 GLY 149 LEU 150 GLY 151 GLY 152 VAL 153 LEU 154 ASP 155 THR 156 SER 157 ARG 158 LEU 159 LYS 160 TYR 161 TYR 162 ILE 163 SER 164 GLN 165 LYS 166 LEU 167 ASN 168 VAL 169 CYS 170 PRO 171 ARG 172 ASP 173 VAL 174 ASN 175 ALA 176 LEU 177 ILE 178 VAL 179 GLY 180 ALA 181 HIS 182 GLY 183 ASN 184 LYS 185 MET 186 VAL 187 LEU 188 LEU 189 LYS 190 ARG 191 TYR 192 ILE 193 THR 194 VAL 195 GLY 196 GLY 197 ILE 198 PRO 199 LEU 200 GLN 201 GLU 202 PHE 203 ILE 204 ASN 205 ASN 206 LYS 207 LYS 208 ILE 209 THR 210 ASP 211 GLU 212 GLU 213 VAL 214 GLU 215 GLY 216 ILE 217 PHE 218 ASP 219 ARG 220 THR 221 VAL 222 ASN 223 THR 224 ALA 225 LEU 226 GLU 227 ILE 228 VAL 229 ASN 230 LEU 231 LEU 232 ALA 233 SER 234 PRO 235 TYR 236 VAL 237 ALA 238 PRO 239 ALA 240 ALA 241 ALA 242 ILE 243 ILE 244 GLU 245 MET 246 ALA 247 GLU 248 SER 249 TYR 250 LEU 251 LYS 252 ASP 253 ILE 254 LYS 255 LYS 256 VAL 257 LEU 258 VAL 259 CYS 260 SER 261 THR 262 LEU 263 LEU 264 GLU 265 GLY 266 GLN 267 TYR 268 GLY 269 HIS 270 SER 271 ASN 272 ILE 273 PHE 274 GLY 275 GLY 276 THR 277 PRO 278 LEU 279 VAL 280 ILE 281 GLY 282 GLY 283 THR 284 GLY 285 VAL 286 GLU 287 GLN 288 VAL 289 ILE 290 GLU 291 LEU 292 GLN 293 LEU 294 ASN 295 ALA 296 GLU 297 GLU 298 LYS 299 THR 300 LYS 301 PHE 302 ASP 303 GLU 304 ALA 305 VAL 306 ALA 307 GLU 308 THR 309 LYS 310 ARG 311 MET 312 LYS 313 ALA 314 LEU 315 ILE 316
Unit 2	LYS 4 PRO 5 LYS 6 ILE 7 VAL 8 LEU 9 VAL 10 GLY 11 SER 12 GLY 13 MET 14 ILE 15 GLY 16 GLY 17 VAL 18 MET 19 ALA 20 THR 21 LEU 22 ILE 23 VAL 24 GLN 25 LYS 26 ASN 27 LEU 28 GLY 29 ASP 30 VAL 31 VAL 32 MET 33 PHE 34 ASP 35 VAL 36 VAL 37 LYS 38 ASN 39 MET 40 PRO 41 GLN 42 GLY 43 LYS 44 ALA 45 LEU 46 ASP 47 THR 48 SER 49 HIS 50 SER 51 ASN 52 VAL 53 MET 54 ALA 55 TYR 56 SER 57 ASN 58 CYS 59 LYS 60 VAL 61 THR 62 GLY 63 SER 64 ASN 65 SER 66 TYR 67 ASP 68 ASP 69 LEU 70 LYS 71 GLY 72 ALA 73 ASP 74 VAL 75 VAL 76 ILE 77 VAL 78 THR 79 ALA 80 GLY 81 PHE 82 THR 83 LYS 84 ARG 95 ASP 96 ASP 97 LEU 98 LEU 99 PRO 100 LEU 101 ASN 102 ASN 103 LYS 104 ILE 105 MET 106 ILE 107 GLU 108 ILE 109 GLY 110 GLY 111 HIS 112 ILE 113 LYS 114 ASN 115 LEU 116 CYS 117 PRO 118 ASN 119 ALA 120 PHE 121 ILE 122 ILE 123 VAL 124 VAL 125 THR 126 ASN 127 PRO 128 VAL 129 ASP 130 VAL 131 MET 132 VAL 133 GLN 134 LEU 135 LEU 136 PHE 137 GLU 138 HIS 139 SER 140 GLY 141 VAL 142 PRO 143 LYS 144 ASN 145 LYS 146 ILE 147 ILE 148 GLY 149 LEU 150 GLY 151 GLY 152 VAL 153 LEU 154 ASP 155 THR 156 SER 157 ARG 158 LEU 159 LYS 160 TYR 161 TYR 162 ILE 163 SER 164 GLN 165 LYS 166 LEU 167 ASN 168 VAL 169 CYS 170 PRO 171 ARG 172 ASP 173 VAL 174 ASN 175 ALA 176 LEU 177 ILE 178 VAL 179 GLY 180 ALA 181 HIS 182 GLY 183 ASN 184 LYS 185 MET 186 VAL 187 LEU 188 LEU 189 LYS 190 ARG 191 TYR 192 ILE 193 THR 194 VAL 195 GLY 196 GLY 197 ILE 198 PRO 199 LEU 200 GLN 201 GLU 202 PHE 203 ILE 204 ASN 205 ASN 206 LYS 207 LYS 208 ILE 209 THR 210 ASP 211 GLU 212 GLU 213 VAL 214 GLU 215 GLY 216 ILE 217 PHE 218 ASP 219 ARG 220 THR 221 VAL 222 ASN 223 THR 224 ALA 225 LEU 226 GLU 227 ILE 228 VAL 229 ASN 230 LEU 231 LEU 232 ALA 233 SER 234 PRO 235 TYR 236 VAL 237 ALA 238 PRO 239 ALA 240 ALA 241 ALA 242 ILE 243 ILE 244 GLU 245 MET 246 ALA 247 GLU 248 SER 249 TYR 250 LEU 251 LYS 252 ASP 253 ILE 254 LYS 255 LYS 256 VAL 257 LEU 258 VAL 259 CYS 260 SER 261 THR 262 LEU 263 LEU 264 GLU 265 GLY 266 GLN 267 TYR 268 GLY 269 HIS 270 SER 271 ASN 272 ILE 273 PHE 274 GLY 275 GLY 276 THR 277 PRO 278 LEU 279 VAL 280 ILE 281 GLY 282 GLY 283 THR 284 GLY 285 VAL 286 GLU 287 GLN 288 VAL 289 ILE 290 GLU 291 LEU 292 GLN 293 LEU 294 ASN 295 ALA 296 GLU 297 GLU 298 LYS 299 THR 300 LYS 301 PHE 302 ASP 303 GLU 304 ALA 305 VAL 306 ALA 307 GLU 308 THR 309 LYS 310 ARG 311 MET 312 LYS 313 ALA 314 LEU 315 ILE 316
Unit 4	LYS 4 PRO 5 LYS 6 ILE 7 VAL 8 LEU 9 VAL 10 GLY 11 SER 12 GLY 13 MET 14 ILE 15 GLY 16 GLY 17 VAL 18 MET 19 ALA 20 THR 21 LEU 22 ILE 23 VAL 24 GLN 25 LYS 26 ASN 27 LEU 28 GLY 29 ASP 30 VAL 31 VAL 32 MET 33 PHE 34 ASP 35 VAL 36 VAL 37 LYS 38 ASN 39 MET 40 PRO 41 GLN 42 GLY 43 LYS 44 ALA 45 LEU 46 ASP 47 THR 48 SER 49 HIS 50 SER 51 ASN 52 VAL 53 MET 54 ALA 55 TYR 56 SER 57 ASN 58 CYS 59 LYS 60 VAL 61 THR 62 GLY 63 SER 64 ASN 65 SER 66 TYR 67 ASP 68 ASP 69 LEU 70 LYS 71 GLY 72 ALA 73 ASP 74 VAL 75 VAL 76 ILE 77 VAL 78 THR 79 ALA 80 GLY 81 PHE 82 THR 83 LYS 84 ALA 85 PRO 86 ASP 96 ASP 97 LEU 98 LEU 99 PRO 100 LEU 101 ASN 102 ASN 103 LYS 104 ILE 105 MET 106 ILE 107 GLU 108 ILE 109 GLY 110 GLY 111 HIS 112 ILE 113 LYS 114 ASN 115 LEU 116 CYS 117 PRO 118 ASN 119 ALA 120 PHE 121 ILE 122 ILE 123 VAL 124 VAL 125 THR 126 ASN 127 PRO 128 VAL 129 ASP 130 VAL 131 MET 132 VAL 133 GLN 134 LEU 135 LEU 136 PHE 137 GLU 138 HIS 139 SER 140 GLY 141 VAL 142 PRO 143 LYS 144 ASN 145 LYS 146 ILE 147 ILE 148 GLY 149 LEU 150 GLY 151 GLY 152 VAL 153 LEU 154 ASP 155 THR 156 SER 157 ARG 158 LEU 159 LYS 160 TYR 161 TYR 162 ILE 163 SER 164 GLN 165 LYS 166 LEU 167 ASN 168 VAL 169 CYS 170 PRO 171 ARG 172 ASP 173 VAL 174 ASN 175 ALA 176 LEU 177 ILE 178 VAL 179 GLY 180 ALA 181 HIS 182 GLY 183 ASN 184 LYS 185 MET 186 VAL 187 LEU 188 LEU 189 LYS 190 ARG 191 TYR 192 ILE 193 THR 194 VAL 195 GLY 196 GLY 197 ILE 198 PRO 199 LEU 200 GLN 201 GLU 202 PHE 203 ILE 204 ASN 205 ASN 206 LYS 207 LYS 208 ILE 209 THR 210 ASP 211 GLU 212 GLU 213 VAL 214 GLU 215 GLY 216 ILE 217 PHE 218 ASP 219 ARG 220 THR 221 VAL 222 ASN 223 THR 224 ALA 225 LEU 226 GLU 227 ILE 228 VAL 229 ASN 230 LEU 231 LEU 232 ALA 233 SER 234 PRO 235 TYR 236 VAL 237 ALA 238 PRO 239 ALA 240 ALA 241 ALA 242 ILE 243 ILE 244 GLU 245 MET 246 ALA 247 GLU 248 SER 249 TYR 250 LEU 251 LYS 252 ASP 253 ILE 254 LYS 255 LYS 256 VAL 257 LEU 258 VAL 259 CYS 260 SER 261 THR 262 LEU 263 LEU 264 GLU 265 GLY 266 GLN 267 TYR 268 GLY 269 HIS 270 SER 271 ASN 272 ILE 273 PHE 274 GLY 275 GLY 276 THR 277 PRO 278 LEU 279 VAL 280 ILE 281 GLY 282 GLY 283 THR 284 GLY 285 VAL 286 GLU 287 GLN 288 VAL 289 ILE 290 GLU 291 LEU 292 GLN 293 LEU 294 ASN 295 ALA 296 GLU 297 GLU 298 LYS 299 THR 300 LYS 301 PHE 302 ASP 303 GLU 304 ALA 305 VAL 306 ALA 307 GLU 308 THR 309 LYS 310 ARG 311 MET 312 LYS 313 ALA 314 LEU 315 ILE 316
Unit 5	LYS 4 PRO 5 LYS 6 ILE 7 VAL 8 LEU 9 VAL 10 GLY 11 SER 12 GLY 13 MET 14 ILE 15 GLY 16 GLY 17 VAL 18 MET 19 ALA 20 THR 21 LEU 22 ILE 23 VAL 24 GLN 25 LYS 26 ASN 27 LEU 28 GLY 29 ASP 30 VAL 31 VAL 32 MET 33 PHE 34 ASP 35 VAL 36 VAL 37 LYS 38 ASN 39 MET 40 PRO 41 GLN 42 GLY 43 LYS 44 ALA 45 LEU 46 ASP 47 THR 48 SER 49 HIS 50 SER 51 ASN 52 VAL 53 MET 54 ALA 55 TYR 56 SER 57 ASN 58 CYS 59 LYS 60 VAL 61 THR 62 GLY 63 SER 64 ASN 65 SER 66 TYR 67 ASP 68 ASP 69 LEU 70 LYS 71 GLY 72 ALA 73 ASP 74 VAL 75 VAL 76 ILE 77 VAL 78 THR 79 ALA 80 GLY 81 PHE 82 THR 83 LYS 84 ALA 85 PRO 86 ARG 95 ASP 96 ASP 97 LEU 98 LEU 99 PRO 100 LEU 101 ASN 102 ASN 103 LYS 104 ILE 105 MET 106 ILE 107 GLU 108 ILE 109 GLY 110 GLY 111 HIS 112 ILE 113 LYS 114 ASN 115 LEU 116 CYS 117 PRO 118 ASN 119 ALA 120 PHE 121 ILE 122 ILE 123 VAL 124 VAL 125 THR 126 ASN 127 PRO 128 VAL 129 ASP 130 VAL 131 MET 132 VAL 133 GLN 134 LEU 135 LEU 136 PHE 137 GLU 138 HIS 139 SER 140 GLY 141 VAL 142 PRO 143 LYS 144 ASN 145 LYS 146 ILE 147 ILE 148 GLY 149 LEU 150 GLY 151 GLY 152 VAL 153 LEU 154 ASP 155 THR 156 SER 157 ARG 158 LEU 159 LYS 160 TYR 161 TYR 162 ILE 163 SER 164 GLN 165 LYS 166 LEU 167 ASN 168 VAL 169 CYS 170 PRO 171 ARG 172 ASP 173 VAL 174 ASN 175 ALA 176 LEU 177 ILE 178 VAL 179 GLY 180 ALA 181 HIS 182 GLY 183 ASN 184 LYS 185 MET 186 VAL 187 LEU 188 LEU 189 LYS 190 ARG 191 TYR 192 ILE 193 THR 194 VAL 195 GLY 196 GLY 197 ILE 198 PRO 199 LEU 200 GLN 201 GLU 202 PHE 203 ILE 204 ASN 205 ASN 206 LYS 207 LYS 208 ILE 209 THR 210 ASP 211 GLU 212 GLU 213 VAL 214 GLU 215 GLY 216 ILE 217 PHE 218 ASP 219 ARG 220 THR 221 VAL 222 ASN 223 THR 224 ALA 225 LEU 226 GLU 227 ILE 228 VAL 229 ASN 230 LEU 231 LEU 232 ALA 233 SER 234 PRO 235 TYR 236 VAL 237 ALA 238 PRO 239 ALA 240 ALA 241 ALA 242 ILE 243 ILE 244 GLU 245 MET 246 ALA 247 GLU 248 SER 249 TYR 250 LEU 251 LYS 252 ASP 253 ILE 254 LYS 255 LYS 256 VAL 257 LEU 258 VAL 259 CYS 260 SER 261 THR 262 LEU 263 LEU 264 GLU 265 GLY 266 GLN 267 TYR 268 GLY 269 HIS 270 SER 271 ASN 272 ILE 273 PHE 274 GLY 275 GLY 276 THR 277 PRO 278 LEU 279 VAL 280 ILE 281 GLY 282 GLY 283 THR 284 GLY 285 VAL 286 GLU 287 GLN 288 VAL 289 ILE 290 GLU 291 LEU 292 GLN 293 LEU 294 ASN 295 ALA 296 GLU 297 GLU 298 LYS 299 THR 300 LYS 301 PHE 302 ASP 303 GLU 304 ALA 305 VAL 306 ALA 307 GLU 308 THR 309 LYS 310 ARG 311 MET 312 LYS 313 ALA 314 LEU 315 ILE 316

Other macromolecules

Unit 3	DT 2 DT 3 DC 4 DG 5 DA 6 DT 7 DT 8 DG 9 DG 10 DA 11 DT 12 DT 13 DG 14 DT 15 DG 16 DC 17 DC 18 DG 19 DG 20 DA 21 DA 22 DG 23 DT 24 DG 25 DC 26 DT 27 DG 28 DG 29 DC 30 DT 31 DC 32 DG 33 DA 34 DA 35
Unit 6	DC 4 DG 5 DA 6 DT 7 DT 8 DG 9 DG 10 DA 11 DT 12 DT 13 DG 14 DT 15 DG 16 DC 17 DC 18 DG 19 DG 20 DA 21 DA 22 DG 23 DT 24 DG 25 DC 26 DT 27 DG 28 DG 29 DC 30 DT 31 DC 32 DG 33

Ligands

Unit 7	MG 101
Unit 8	MG 101