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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF TYPE IIL RESTRICTION-MODIFICATION ENZYME MMEI I WITH DNA HAS IMPLICATIONS FOR ENGINEERING OF NEW SPECIFICIT
Keywords DNA-PROTEIN COMPLEX, RESTRICTION-MODIFICATION ENZYME, HYDROL COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5HR4     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MMEI  C 749 5774 0
2  Other macromolecule    H 13 263 0
3  Other macromolecule    I 13 270 0
4  Protein   MMEI  J 751 5808 0
5  Other macromolecule    K 13 263 0
6  Other macromolecule    L 12 248 0
7  Ligand   MMEI  C 2 0 28
8  Ligand   MMEI  J 2 0 28
9 Water     63 0 63
total       1618 12626 119
Proteins
Unit 1 PRO157 GLN158 ASP159 PRO160 ILE161 ASN162 ILE163 LYS164 ALA165 ALA166 GLU167 ARG168 MET169 GLY170 LYS171 LEU172 HIS173 ASP174 THR175 LEU176 LYS177 LEU178 VAL179 GLY180 TYR181 GLU182 GLY183 HIS184 ALA185 LEU186 GLU187 LEU188 TYR189 LEU190 VAL191 ARG192 LEU193 LEU194 PHE195 CYS196 LEU197 PHE198 ALA199 GLU200 ASP201 THR202 THR203 ILE204 PHE205 GLU206 LYS207 SER208 LEU209 PHE210 GLN211 GLU212 TYR213 ILE214 GLU215 THR216 LYS217 THR218 LEU219 GLU220 ASP221 GLY222 SER223 ASP224 LEU225 ALA226 HIS227 HIS228 ILE229 ASN230 THR231 LEU232 PHE233 TYR234 VAL235 LEU236 ASN237 THR238 PRO239 GLU240 GLN241 LYS242 ARG243 LEU244 LYS245 ASN246 LEU247 ASP248 GLU249 HIS250 LEU251 ALA252 ALA253 PHE254 PRO255 TYR256 ILE257 ASN258 GLY259 LYS260 LEU261 PHE262 GLU263 GLU264 PRO265 LEU266 PRO267 PRO268 ALA269 GLN270 PHE271 ASP272 LYS273 ALA274 MET275 ARG276 GLU277 ALA278 LEU279 LEU280 ASP281 LEU282 CYS283 SER284 LEU285 ASP286 TRP287 SER288 ARG289 ILE290 SER291 PRO292 ALA293 ILE294 PHE295 GLY296 SER297 LEU298 PHE299 GLN300 SER301 ILE302 MET303 ASP304 ALA305 LYS306 LYS307 ARG308 ARG309 ASN310 LEU311 GLY312 ALA313 HIS314 TYR315 THR316 SER317 GLU318 ALA319 ASN320 ILE321 LEU322 LYS323 LEU324 ILE325 LYS326 PRO327 LEU328 PHE329 LEU330 ASP331 GLU332 LEU333 TRP334 VAL335 GLU336 PHE337 GLU338 LYS339 VAL340 LYS341 ASN342 ASN343 LYS344 ASN345 LYS346 LEU347 LEU348 ALA349 PHE350 HIS351 LYS352 LYS353 LEU354 ARG355 GLY356 LEU357 THR358 PHE359 PHE360 ASP361 PRO362 ALA363 CYS364 GLY365 CYS366 GLY367 ASN368 PHE369 LEU370 VAL371 ILE372 THR373 TYR374 ARG375 GLU376 LEU377 ARG378 LEU379 LEU380 GLU381 ILE382 GLU383 VAL384 LEU385 ARG386 GLY387 LEU388 HIS389 ARG390 GLY391 GLY392 GLN393 GLN394 VAL395 LEU396 ASP397 ILE398 GLU399 HIS400 LEU401 ILE402 GLN403 ILE404 ASN405 VAL406 ASP407 GLN408 PHE409 PHE410 GLY411 ILE412 GLU413 ILE414 GLU415 GLU416 PHE417 PRO418 ALA419 GLN420 ILE421 ALA422 GLN423 VAL424 ALA425 LEU426 TRP427 LEU428 THR429 ASP430 HIS431 GLN432 MET433 ASN434 MET435 LYS436 ILE437 SER438 ASP439 GLU440 PHE441 GLY442 ASN443 TYR444 PHE445 ALA446 ARG447 ILE448 PRO449 LEU450 LYS451 SER452 THR453 PRO454 HIS455 ILE456 LEU457 ASN458 ALA459 ASN460 ALA461 LEU462 GLN463 ILE464 ASP465 TRP466 ASN467 ASP468 VAL469 LEU470 GLU471 ALA472 LYS473 LYS474 CYS475 CYS476 PHE477 ILE478 LEU479 GLY480 ASN481 PRO482 PRO483 PHE484 VAL485 GLY486 LYS487 SER488 LYS489 GLN490 THR491 PRO492 GLY493 GLN494 LYS495 ALA496 ASP497 LEU498 LEU499 SER500 VAL501 PHE502 GLY503 ASN504 LEU505 LYS506 SER507 ALA508 SER509 ASP510 LEU511 ASP512 LEU513 VAL514 ALA515 ALA516 TRP517 TYR518 PRO519 LYS520 ALA521 ALA522 HIS523 TYR524 ILE525 GLN526 THR527 ASN528 ALA529 ASN530 ILE531 ARG532 CYS533 ALA534 PHE535 VAL536 SER537 THR538 ASN539 SER540 ILE541 THR542 GLN543 GLY544 GLU545 GLN546 VAL547 SER548 LEU549 LEU550 TRP551 PRO552 LEU553 LEU554 LEU555 SER556 LEU557 GLY558 ILE559 LYS560 ILE561 ASN562 PHE563 ALA564 HIS565 ARG566 THR567 PHE568 SER569 TRP570 THR571 ASN572 GLU573 ALA574 SER575 GLY576 VAL577 ALA578 ALA579 VAL580 HIS581 CYS582 VAL583 ILE584 ILE585 GLY586 PHE587 GLY588 LEU589 LYS590 ASP591 SER592 ASP593 GLU594 LYS595 ILE596 ILE597 TYR598 GLU599 TYR600 GLU601 SER602 ILE603 ASN604 GLY605 GLU606 PRO607 LEU608 ALA609 ILE610 LYS611 ALA612 LYS613 ASN614 ILE615 ASN616 PRO617 TYR618 LEU619 ARG620 ASP621 GLY622 VAL623 ASP624 VAL625 ILE626 ALA627 CYS628 LYS629 ARG630 GLN631 GLN632 PRO633 ILE634 SER635 LYS636 LEU637 PRO638 SER639 MET640 ARG641 TYR642 GLY643 ASN644 LYS645 PRO646 THR647 ASP648 ASP649 GLY650 ASN651 PHE652 LEU653 PHE654 THR655 ASP656 GLU657 GLU658 LYS659 ASN660 GLN661 PHE662 ILE663 THR664 ASN665 GLU666 PRO667 SER668 SER669 GLU670 LYS671 TYR672 PHE673 ARG674 ARG675 PHE676 VAL677 GLY678 GLY679 ASP680 GLU681 PHE682 ILE683 ASN684 ASN685 THR686 SER687 ARG688 TRP689 CYS690 LEU691 TRP692 LEU693 ASP694 GLY695 ALA696 ASP697 ILE698 SER699 GLU700 ILE701 ARG702 ALA703 MET704 PRO705 LEU706 VAL707 LEU708 ALA709 ARG710 ILE711 LYS712 LYS713 VAL714 GLN715 GLU716 PHE717 ARG718 LEU719 LYS720 SER721 SER722 ALA723 LYS724 PRO725 THR726 ARG727 GLN728 SER729 ALA730 SER731 THR732 PRO733 MET734 LYS735 PHE736 PHE737 TYR738 ILE739 SER740 GLN741 PRO742 ASP743 THR744 ASP745 TYR746 LEU747 LEU748 ILE749 PRO750 GLU751 THR752 SER753 SER754 GLU755 ASN756 ARG757 GLN758 PHE759 ILE760 PRO761 ILE762 GLY763 PHE764 VAL765 ASP766 ARG767 ASN768 VAL769 ILE770 SER771 SER772 ASN773 ALA774 THR775 TYR776 HIS777 ILE778 PRO779 SER780 ALA781 GLU782 PRO783 LEU784 ILE785 PHE786 GLY787 LEU788 LEU789 SER790 SER791 THR792 MET793 HIS794 ASN795 CYS796 TRP797 MET798 ARG799 ASN800 VAL801 GLY802 GLY803 ARG804 LEU805 GLU806 SER807 ARG808 TYR809 ARG810 TYR811 SER812 ALA813 SER814 LEU815 VAL816 TYR817 ASN818 THR819 PHE820 PRO821 TRP822 ILE823 GLN824 PRO825 ASN826 GLU827 LYS828 GLN829 SER830 LYS831 ALA832 ILE833 GLU834 GLU835 ALA836 ALA837 PHE838 ALA839 ILE840 LEU841 LYS842 ALA843 ARG844 SER845 ASN846 TYR847 PRO848 ASN849 GLU850 SER851 LEU852 ALA853 GLY854 LEU855 TYR856 ASP857 PRO858 LYS859 THR860 MET861 PRO862 SER863 GLU864 LEU865 LEU866 LYS867 ALA868 HIS869 GLN870 LYS871 LEU872 ASP873 LYS874 ALA875 VAL876 ASP877 SER878 VAL879 TYR880 GLY881 PHE882 LYS883 GLY884 PRO885 ASN886 THR887 GLU888 ILE889 ALA890 ARG891 ILE892 ALA893 PHE894 LEU895 PHE896 GLU897 THR898 TYR899 GLN900 LYS901 MET902 THR903 SER904 LEU905
Unit 4 LYS156 PRO157 GLN158 ASP159 PRO160 ILE161 ASN162 ILE163 LYS164 ALA165 ALA166 GLU167 ARG168 MET169 GLY170 LYS171 LEU172 HIS173 ASP174 THR175 LEU176 LYS177 LEU178 VAL179 GLY180 TYR181 GLU182 GLY183 HIS184 ALA185 LEU186 GLU187 LEU188 TYR189 LEU190 VAL191 ARG192 LEU193 LEU194 PHE195 CYS196 LEU197 PHE198 ALA199 GLU200 ASP201 THR202 THR203 ILE204 PHE205 GLU206 LYS207 SER208 LEU209 PHE210 GLN211 GLU212 TYR213 ILE214 GLU215 THR216 LYS217 THR218 LEU219 GLU220 ASP221 GLY222 SER223 ASP224 LEU225 ALA226 HIS227 HIS228 ILE229 ASN230 THR231 LEU232 PHE233 TYR234 VAL235 LEU236 ASN237 THR238 PRO239 GLU240 GLN241 LYS242 ARG243 LEU244 LYS245 ASN246 LEU247 ASP248 GLU249 HIS250 LEU251 ALA252 ALA253 PHE254 PRO255 TYR256 ILE257 ASN258 GLY259 LYS260 LEU261 PHE262 GLU263 GLU264 PRO265 LEU266 PRO267 PRO268 ALA269 GLN270 PHE271 ASP272 LYS273 ALA274 MET275 ARG276 GLU277 ALA278 LEU279 LEU280 ASP281 LEU282 CYS283 SER284 LEU285 ASP286 TRP287 SER288 ARG289 ILE290 SER291 PRO292 ALA293 ILE294 PHE295 GLY296 SER297 LEU298 PHE299 GLN300 SER301 ILE302 MET303 ASP304 ALA305 LYS306 LYS307 ARG308 ARG309 ASN310 LEU311 GLY312 ALA313 HIS314 TYR315 THR316 SER317 GLU318 ALA319 ASN320 ILE321 LEU322 LYS323 LEU324 ILE325 LYS326 PRO327 LEU328 PHE329 LEU330 ASP331 GLU332 LEU333 TRP334 VAL335 GLU336 PHE337 GLU338 LYS339 VAL340 LYS341 ASN342 ASN343 LYS344 ASN345 LYS346 LEU347 LEU348 ALA349 PHE350 HIS351 LYS352 LYS353 LEU354 ARG355 GLY356 LEU357 THR358 PHE359 PHE360 ASP361 PRO362 ALA363 CYS364 GLY365 CYS366 GLY367 ASN368 PHE369 LEU370 VAL371 ILE372 THR373 TYR374 ARG375 GLU376 LEU377 ARG378 LEU379 LEU380 GLU381 ILE382 GLU383 VAL384 LEU385 ARG386 GLY387 LEU388 HIS389 ARG390 GLY391 GLY392 GLN393 GLN394 VAL395 LEU396 ASP397 ILE398 GLU399 HIS400 LEU401 ILE402 GLN403 ILE404 ASN405 VAL406 ASP407 GLN408 PHE409 PHE410 GLY411 ILE412 GLU413 ILE414 GLU415 GLU416 PHE417 PRO418 ALA419 GLN420 ILE421 ALA422 GLN423 VAL424 ALA425 LEU426 TRP427 LEU428 THR429 ASP430 HIS431 GLN432 MET433 ASN434 MET435 LYS436 ILE437 SER438 ASP439 GLU440 PHE441 GLY442 ASN443 TYR444 PHE445 ALA446 ARG447 ILE448 PRO449 LEU450 LYS451 SER452 THR453 PRO454 HIS455 ILE456 LEU457 ASN458 ALA459 ASN460 ALA461 LEU462 GLN463 ILE464 ASP465 TRP466 ASN467 ASP468 VAL469 LEU470 GLU471 ALA472 LYS473 LYS474 CYS475 CYS476 PHE477 ILE478 LEU479 GLY480 ASN481 PRO482 PRO483 PHE484 VAL485 GLY486 LYS487 SER488 LYS489 GLN490 THR491 PRO492 GLY493 GLN494 LYS495 ALA496 ASP497 LEU498 LEU499 SER500 VAL501 PHE502 GLY503 ASN504 LEU505 LYS506 SER507 ALA508 SER509 ASP510 LEU511 ASP512 LEU513 VAL514 ALA515 ALA516 TRP517 TYR518 PRO519 LYS520 ALA521 ALA522 HIS523 TYR524 ILE525 GLN526 THR527 ASN528 ALA529 ASN530 ILE531 ARG532 CYS533 ALA534 PHE535 VAL536 SER537 THR538 ASN539 SER540 ILE541 THR542 GLN543 GLY544 GLU545 GLN546 VAL547 SER548 LEU549 LEU550 TRP551 PRO552 LEU553 LEU554 LEU555 SER556 LEU557 GLY558 ILE559 LYS560 ILE561 ASN562 PHE563 ALA564 HIS565 ARG566 THR567 PHE568 SER569 TRP570 THR571 ASN572 GLU573 ALA574 SER575 GLY576 VAL577 ALA578 ALA579 VAL580 HIS581 CYS582 VAL583 ILE584 ILE585 GLY586 PHE587 GLY588 LEU589 LYS590 ASP591 SER592 ASP593 GLU594 LYS595 ILE596 ILE597 TYR598 GLU599 TYR600 GLU601 SER602 ILE603 ASN604 GLY605 GLU606 PRO607 LEU608 ALA609 ILE610 LYS611 ALA612 LYS613 ASN614 ILE615 ASN616 PRO617 TYR618 LEU619 ARG620 ASP621 GLY622 VAL623 ASP624 VAL625 ILE626 ALA627 CYS628 LYS629 ARG630 GLN631 GLN632 PRO633 ILE634 SER635 LYS636 LEU637 PRO638 SER639 MET640 ARG641 TYR642 GLY643 ASN644 LYS645 PRO646 THR647 ASP648 ASP649 GLY650 ASN651 PHE652 LEU653 PHE654 THR655 ASP656 GLU657 GLU658 LYS659 ASN660 GLN661 PHE662 ILE663 THR664 ASN665 GLU666 PRO667 SER668 SER669 GLU670 LYS671 TYR672 PHE673 ARG674 ARG675 PHE676 VAL677 GLY678 GLY679 ASP680 GLU681 PHE682 ILE683 ASN684 ASN685 THR686 SER687 ARG688 TRP689 CYS690 LEU691 TRP692 LEU693 ASP694 GLY695 ALA696 ASP697 ILE698 SER699 GLU700 ILE701 ARG702 ALA703 MET704 PRO705 LEU706 VAL707 LEU708 ALA709 ARG710 ILE711 LYS712 LYS713 VAL714 GLN715 GLU716 PHE717 ARG718 LEU719 LYS720 SER721 SER722 ALA723 LYS724 PRO725 THR726 ARG727 GLN728 SER729 ALA730 SER731 THR732 PRO733 MET734 LYS735 PHE736 PHE737 TYR738 ILE739 SER740 GLN741 PRO742 ASP743 THR744 ASP745 TYR746 LEU747 LEU748 ILE749 PRO750 GLU751 THR752 SER753 SER754 GLU755 ASN756 ARG757 GLN758 PHE759 ILE760 PRO761 ILE762 GLY763 PHE764 VAL765 ASP766 ARG767 ASN768 VAL769 ILE770 SER771 SER772 ASN773 ALA774 THR775 TYR776 HIS777 ILE778 PRO779 SER780 ALA781 GLU782 PRO783 LEU784 ILE785 PHE786 GLY787 LEU788 LEU789 SER790 SER791 THR792 MET793 HIS794 ASN795 CYS796 TRP797 MET798 ARG799 ASN800 VAL801 GLY802 GLY803 ARG804 LEU805 GLU806 SER807 ARG808 TYR809 ARG810 TYR811 SER812 ALA813 SER814 LEU815 VAL816 TYR817 ASN818 THR819 PHE820 PRO821 TRP822 ILE823 GLN824 PRO825 ASN826 GLU827 LYS828 GLN829 SER830 LYS831 ALA832 ILE833 GLU834 GLU835 ALA836 ALA837 PHE838 ALA839 ILE840 LEU841 LYS842 ALA843 ARG844 SER845 ASN846 TYR847 PRO848 ASN849 GLU850 SER851 LEU852 ALA853 GLY854 LEU855 TYR856 ASP857 PRO858 LYS859 THR860 MET861 PRO862 SER863 GLU864 LEU865 LEU866 LYS867 ALA868 HIS869 GLN870 LYS871 LEU872 ASP873 LYS874 ALA875 VAL876 ASP877 SER878 VAL879 TYR880 GLY881 PHE882 LYS883 GLY884 PRO885 ASN886 THR887 GLU888 ILE889 ALA890 ARG891 ILE892 ALA893 PHE894 LEU895 PHE896 GLU897 THR898 TYR899 GLN900 LYS901 MET902 THR903 SER904 LEU905 LEU906
Other macromolecules
Unit 2 DT1 DA2 DT3 DC4 DC5 DG6 DA7 DC8 DA9 DT10 DA11 DA12 DC13
Unit 3 DG17 DT18 DT19 DA20 DT21 DG22 DT23 DC24 DG25 DG26 DA27 DT28 DA29
Unit 5 DT1 DA2 DT3 DC4 DC5 DG6 DA7 DC8 DA9 DT10 DA11 DA12 DC13
Unit 6 DT18 DT19 DA20 DT21 DG22 DT23 DC24 DG25 DG26 DA27 DT28 DA29
Ligands
Unit 7 CA1001 SFG1002
Unit 8 CA1001 SFG1002
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany