5HQ8 - Sequence, Chains, Asymmetric and Biological Units

• Title: CO-CRYSTAL STRUCTURE OF HUMAN SMYD3 WITH A MEKK2 PEPTIDE AT
• Keywords: SMYD3, METHYLTRANSFERASE, ONCOLOGY, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5HQ8	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3	A	426	3345	0
2	Protein	HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3	B	425	3295	0
3	Protein	MEKK2 PEPTIDE	I	10	73	0
4	Protein	MEKK2 PEPTIDE	J	9	61	0
5	Ligand	HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3	A	7	0	38
6	Ligand	HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3	B	8	0	44
7	Ligand	MEKK2 PEPTIDE	I	1	0	4
8	Ligand	MEKK2 PEPTIDE	J	1	0	4
9	Water			717	0	717
total				1604	6774	807

Proteins

Unit 1	PRO 3 LEU 4 LYS 5 VAL 6 GLU 7 LYS 8 PHE 9 ALA 10 THR 11 ALA 12 ASN 13 ARG 14 GLY 15 ASN 16 GLY 17 LEU 18 ARG 19 ALA 20 VAL 21 THR 22 PRO 23 LEU 24 ARG 25 PRO 26 GLY 27 GLU 28 LEU 29 LEU 30 PHE 31 ARG 32 SER 33 ASP 34 PRO 35 LEU 36 ALA 37 TYR 38 THR 39 VAL 40 CYS 41 LYS 42 GLY 43 SER 44 ARG 45 GLY 46 VAL 47 VAL 48 CYS 49 ASP 50 ARG 51 CYS 52 LEU 53 LEU 54 GLY 55 LYS 56 GLU 57 LYS 58 LEU 59 MET 60 ARG 61 CYS 62 SER 63 GLN 64 CYS 65 ARG 66 VAL 67 ALA 68 LYS 69 TYR 70 CYS 71 SER 72 ALA 73 LYS 74 CYS 75 GLN 76 LYS 77 LYS 78 ALA 79 TRP 80 PRO 81 ASP 82 HIS 83 LYS 84 ARG 85 GLU 86 CYS 87 LYS 88 CYS 89 LEU 90 LYS 91 SER 92 CYS 93 LYS 94 PRO 95 ARG 96 TYR 97 PRO 98 PRO 99 ASP 100 SER 101 VAL 102 ARG 103 LEU 104 LEU 105 GLY 106 ARG 107 VAL 108 VAL 109 PHE 110 LYS 111 LEU 112 MET 113 ASP 114 GLY 115 ALA 116 PRO 117 SER 118 GLU 119 SER 120 GLU 121 LYS 122 LEU 123 TYR 124 SER 125 PHE 126 TYR 127 ASP 128 LEU 129 GLU 130 SER 131 ASN 132 ILE 133 ASN 134 LYS 135 LEU 136 THR 137 GLU 138 ASP 139 LYS 140 LYS 141 GLU 142 GLY 143 LEU 144 ARG 145 GLN 146 LEU 147 VAL 148 MET 149 THR 150 PHE 151 GLN 152 HIS 153 PHE 154 MET 155 ARG 156 GLU 157 GLU 158 ILE 159 GLN 160 ASP 161 ALA 162 SER 163 GLN 164 LEU 165 PRO 166 PRO 167 ALA 168 PHE 169 ASP 170 LEU 171 PHE 172 GLU 173 ALA 174 PHE 175 ALA 176 LYS 177 VAL 178 ILE 179 CYS 180 ASN 181 SER 182 PHE 183 THR 184 ILE 185 CYS 186 ASN 187 ALA 188 GLU 189 MET 190 GLN 191 GLU 192 VAL 193 GLY 194 VAL 195 GLY 196 LEU 197 TYR 198 PRO 199 SER 200 ILE 201 SER 202 LEU 203 LEU 204 ASN 205 HIS 206 SER 207 CYS 208 ASP 209 PRO 210 ASN 211 CYS 212 SER 213 ILE 214 VAL 215 PHE 216 ASN 217 GLY 218 PRO 219 HIS 220 LEU 221 LEU 222 LEU 223 ARG 224 ALA 225 VAL 226 ARG 227 ASP 228 ILE 229 GLU 230 VAL 231 GLY 232 GLU 233 GLU 234 LEU 235 THR 236 ILE 237 CYS 238 TYR 239 LEU 240 ASP 241 MET 242 LEU 243 MET 244 THR 245 SER 246 GLU 247 GLU 248 ARG 249 ARG 250 LYS 251 GLN 252 LEU 253 ARG 254 ASP 255 GLN 256 TYR 257 CYS 258 PHE 259 GLU 260 CYS 261 ASP 262 CYS 263 PHE 264 ARG 265 CYS 266 GLN 267 THR 268 GLN 269 ASP 270 LYS 271 ASP 272 ALA 273 ASP 274 MET 275 LEU 276 THR 277 GLY 278 ASP 279 GLU 280 GLN 281 VAL 282 TRP 283 LYS 284 GLU 285 VAL 286 GLN 287 GLU 288 SER 289 LEU 290 LYS 291 LYS 292 ILE 293 GLU 294 GLU 295 LEU 296 LYS 297 ALA 298 HIS 299 TRP 300 LYS 301 TRP 302 GLU 303 GLN 304 VAL 305 LEU 306 ALA 307 MET 308 CYS 309 GLN 310 ALA 311 ILE 312 ILE 313 SER 314 SER 315 ASN 316 SER 317 GLU 318 ARG 319 LEU 320 PRO 321 ASP 322 ILE 323 ASN 324 ILE 325 TYR 326 GLN 327 LEU 328 LYS 329 VAL 330 LEU 331 ASP 332 CYS 333 ALA 334 MET 335 ASP 336 ALA 337 CYS 338 ILE 339 ASN 340 LEU 341 GLY 342 LEU 343 LEU 344 GLU 345 GLU 346 ALA 347 LEU 348 PHE 349 TYR 350 GLY 351 THR 352 ARG 353 THR 354 MET 355 GLU 356 PRO 357 TYR 358 ARG 359 ILE 360 PHE 361 PHE 362 PRO 363 GLY 364 SER 365 HIS 366 PRO 367 VAL 368 ARG 369 GLY 370 VAL 371 GLN 372 VAL 373 MET 374 LYS 375 VAL 376 GLY 377 LYS 378 LEU 379 GLN 380 LEU 381 HIS 382 GLN 383 GLY 384 MET 385 PHE 386 PRO 387 GLN 388 ALA 389 MET 390 LYS 391 ASN 392 LEU 393 ARG 394 LEU 395 ALA 396 PHE 397 ASP 398 ILE 399 MET 400 ARG 401 VAL 402 THR 403 HIS 404 GLY 405 ARG 406 GLU 407 HIS 408 SER 409 LEU 410 ILE 411 GLU 412 ASP 413 LEU 414 ILE 415 LEU 416 LEU 417 LEU 418 GLU 419 GLU 420 CYS 421 ASP 422 ALA 423 ASN 424 ILE 425 ARG 426 ALA 427 SER 428
Unit 2	PRO 3 LEU 4 LYS 5 VAL 6 GLU 7 LYS 8 PHE 9 ALA 10 THR 11 ALA 12 ASN 13 ARG 14 GLY 15 ASN 16 GLY 17 LEU 18 ARG 19 ALA 20 VAL 21 THR 22 PRO 23 LEU 24 ARG 25 PRO 26 GLY 27 GLU 28 LEU 29 LEU 30 PHE 31 ARG 32 SER 33 ASP 34 PRO 35 LEU 36 ALA 37 TYR 38 THR 39 VAL 40 CYS 41 LYS 42 GLY 43 SER 44 ARG 45 GLY 46 VAL 47 VAL 48 CYS 49 ASP 50 ARG 51 CYS 52 LEU 53 LEU 54 GLY 55 LYS 56 GLU 57 LYS 58 LEU 59 MET 60 ARG 61 CYS 62 SER 63 GLN 64 CYS 65 ARG 66 VAL 67 ALA 68 LYS 69 TYR 70 CYS 71 SER 72 ALA 73 LYS 74 CYS 75 GLN 76 LYS 77 LYS 78 ALA 79 TRP 80 PRO 81 ASP 82 HIS 83 LYS 84 ARG 85 GLU 86 CYS 87 LYS 88 CYS 89 LEU 90 LYS 91 SER 92 CYS 93 LYS 94 PRO 95 ARG 96 TYR 97 PRO 98 PRO 99 ASP 100 SER 101 VAL 102 ARG 103 LEU 104 LEU 105 GLY 106 ARG 107 VAL 108 VAL 109 PHE 110 LYS 111 LEU 112 MET 113 ASP 114 GLY 115 ALA 116 PRO 117 SER 118 GLU 119 SER 120 GLU 121 LYS 122 LEU 123 TYR 124 SER 125 PHE 126 TYR 127 ASP 128 LEU 129 GLU 130 SER 131 ASN 132 ILE 133 ASN 134 LYS 135 LEU 136 THR 137 GLU 138 ASP 139 LYS 140 LYS 141 GLU 142 GLY 143 LEU 144 ARG 145 GLN 146 LEU 147 VAL 148 MET 149 THR 150 PHE 151 GLN 152 HIS 153 PHE 154 MET 155 ARG 156 GLU 157 GLU 158 ILE 159 GLN 160 ASP 161 ALA 162 SER 163 GLN 164 LEU 165 PRO 166 PRO 167 ALA 168 PHE 169 ASP 170 LEU 171 PHE 172 GLU 173 ALA 174 PHE 175 ALA 176 LYS 177 VAL 178 ILE 179 CYS 180 ASN 181 SER 182 PHE 183 THR 184 ILE 185 CYS 186 ASN 187 ALA 188 GLU 189 MET 190 GLN 191 GLU 192 VAL 193 GLY 194 VAL 195 GLY 196 LEU 197 TYR 198 PRO 199 SER 200 ILE 201 SER 202 LEU 203 LEU 204 ASN 205 HIS 206 SER 207 CYS 208 ASP 209 PRO 210 ASN 211 CYS 212 SER 213 ILE 214 VAL 215 PHE 216 ASN 217 GLY 218 PRO 219 HIS 220 LEU 221 LEU 222 LEU 223 ARG 224 ALA 225 VAL 226 ARG 227 ASP 228 ILE 229 GLU 230 VAL 231 GLY 232 GLU 233 GLU 234 LEU 235 THR 236 ILE 237 CYS 238 TYR 239 LEU 240 ASP 241 MET 242 LEU 243 MET 244 THR 245 SER 246 GLU 247 GLU 248 ARG 249 ARG 250 LYS 251 GLN 252 LEU 253 ARG 254 ASP 255 GLN 256 TYR 257 CYS 258 PHE 259 GLU 260 CYS 261 ASP 262 CYS 263 PHE 264 ARG 265 CYS 266 GLN 267 THR 268 GLN 269 ASP 270 LYS 271 ASP 272 ALA 273 ASP 274 MET 275 LEU 276 THR 277 GLY 278 ASP 279 GLU 280 GLN 281 VAL 282 TRP 283 LYS 284 GLU 285 VAL 286 GLN 287 GLU 288 SER 289 LEU 290 LYS 291 LYS 292 ILE 293 GLU 294 GLU 295 LEU 296 LYS 297 ALA 298 HIS 299 TRP 300 LYS 301 TRP 302 GLU 303 GLN 304 VAL 305 LEU 306 ALA 307 MET 308 CYS 309 GLN 310 ALA 311 ILE 312 ILE 313 SER 314 SER 315 ASN 316 SER 317 GLU 318 ARG 319 LEU 320 PRO 321 ASP 322 ILE 323 ASN 324 ILE 325 TYR 326 GLN 327 LEU 328 LYS 329 VAL 330 LEU 331 ASP 332 CYS 333 ALA 334 MET 335 ASP 336 ALA 337 CYS 338 ILE 339 ASN 340 LEU 341 GLY 342 LEU 343 LEU 344 GLU 345 GLU 346 ALA 347 LEU 348 PHE 349 TYR 350 GLY 351 THR 352 ARG 353 THR 354 MET 355 GLU 356 PRO 357 TYR 358 ARG 359 ILE 360 PHE 361 PHE 362 PRO 363 GLY 364 SER 365 HIS 366 PRO 367 VAL 368 ARG 369 GLY 370 VAL 371 GLN 372 VAL 373 MET 374 LYS 375 VAL 376 GLY 377 LYS 378 LEU 379 GLN 380 LEU 381 HIS 382 GLN 383 GLY 384 MET 385 PHE 386 PRO 387 GLN 388 ALA 389 MET 390 LYS 391 ASN 392 LEU 393 ARG 394 LEU 395 ALA 396 PHE 397 ASP 398 ILE 399 MET 400 ARG 401 VAL 402 THR 403 HIS 404 GLY 405 ARG 406 GLU 407 HIS 408 SER 409 LEU 410 ILE 411 GLU 412 ASP 413 LEU 414 ILE 415 LEU 416 LEU 417 LEU 418 GLU 419 GLU 420 CYS 421 ASP 422 ALA 423 ASN 424 ILE 425 ARG 426 ALA 427
Unit 3	TYR 250 GLU 256 LYS 257 PHE 258 GLY 259 LYS 260 GLY 261 GLY 262 THR 263 TYR 264
Unit 4	GLU 256 LYS 257 PHE 258 GLY 259 LYS 260 GLY 261 GLY 262 THR 263 TYR 264

Ligands

Unit 5	ZN 501 ZN 502 ZN 503 MG 504 EDO 505 EDO 506 SAH 507
Unit 6	ZN 501 ZN 502 ZN 503 MG 504 EDO 505 GOL 506 EDO 507 SAH 508
Unit 7	EDO 301
Unit 8	EDO 301