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Sequence, Chains, Asymmetric and Biological Units

Title REFINEMENT OF THE INFLUENZA VIRUS HEMAGGLUTININ BY SIMULATED
Keywords INFLUENZA VIRUS HEMAGGLUTININ, VIRAL PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5HMG     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HEMAGGLUTININ HA1 CHAIN  A 328 2532 0
2  Protein   HEMAGGLUTININ HA2 CHAIN  B 175 1417 0
3  Protein   HEMAGGLUTININ HA1 CHAIN  C 328 2532 0
4  Protein   HEMAGGLUTININ HA2 CHAIN  D 175 1417 0
5  Protein   HEMAGGLUTININ HA1 CHAIN  E 328 2532 0
6  Protein   HEMAGGLUTININ HA2 CHAIN  F 175 1417 0
7  Ligand    G 3 0 39
8  Ligand    H 3 0 39
9  Ligand    I 3 0 39
10  Ligand   HEMAGGLUTININ HA1 CHAIN  A 4 0 63
11  Ligand   HEMAGGLUTININ HA2 CHAIN  B 1 0 14
12  Ligand   HEMAGGLUTININ HA1 CHAIN  C 4 0 63
13  Ligand   HEMAGGLUTININ HA2 CHAIN  D 1 0 14
14  Ligand   HEMAGGLUTININ HA1 CHAIN  E 4 0 63
15  Ligand   HEMAGGLUTININ HA2 CHAIN  F 1 0 14
16 Water     39 0 39
total       1572 11847 387
Proteins
Unit 1 GLN1 ASP2 LEU3 PRO4 GLY5 ASN6 ASP7 ASN8 SER9 THR10 ALA11 THR12 LEU13 CYS14 LEU15 GLY16 HIS17 HIS18 ALA19 VAL20 PRO21 ASN22 GLY23 THR24 LEU25 VAL26 LYS27 THR28 ILE29 THR30 ASP31 ASP32 GLN33 ILE34 GLU35 VAL36 THR37 ASN38 ALA39 THR40 GLU41 LEU42 VAL43 GLN44 SER45 SER46 SER47 THR48 GLY49 LYS50 ILE51 CYS52 ASN53 ASN54 PRO55 HIS56 ARG57 ILE58 LEU59 ASP60 GLY61 ILE62 ASP63 CYS64 THR65 LEU66 ILE67 ASP68 ALA69 LEU70 LEU71 GLY72 ASP73 PRO74 HIS75 CYS76 ASP77 VAL78 PHE79 GLN80 ASN81 GLU82 THR83 TRP84 ASP85 LEU86 PHE87 VAL88 GLU89 ARG90 SER91 LYS92 ALA93 PHE94 SER95 ASN96 CYS97 TYR98 PRO99 TYR100 ASP101 VAL102 PRO103 ASP104 TYR105 ALA106 SER107 LEU108 ARG109 SER110 LEU111 VAL112 ALA113 SER114 SER115 GLY116 THR117 LEU118 GLU119 PHE120 ILE121 THR122 GLU123 GLY124 PHE125 THR126 TRP127 THR128 GLY129 VAL130 THR131 GLN132 ASN133 GLY134 GLY135 SER136 ASN137 ALA138 CYS139 LYS140 ARG141 GLY142 PRO143 GLY144 SER145 GLY146 PHE147 PHE148 SER149 ARG150 LEU151 ASN152 TRP153 LEU154 THR155 LYS156 SER157 GLY158 SER159 THR160 TYR161 PRO162 VAL163 LEU164 ASN165 VAL166 THR167 MET168 PRO169 ASN170 ASN171 ASP172 ASN173 PHE174 ASP175 LYS176 LEU177 TYR178 ILE179 TRP180 GLY181 ILE182 HIS183 HIS184 PRO185 SER186 THR187 ASN188 GLN189 GLU190 GLN191 THR192 SER193 LEU194 TYR195 VAL196 GLN197 ALA198 SER199 GLY200 ARG201 VAL202 THR203 VAL204 SER205 THR206 ARG207 ARG208 SER209 GLN210 GLN211 THR212 ILE213 ILE214 PRO215 ASN216 ILE217 GLY218 SER219 ARG220 PRO221 TRP222 VAL223 ARG224 GLY225 LEU226 SER227 SER228 ARG229 ILE230 SER231 ILE232 TYR233 TRP234 THR235 ILE236 VAL237 LYS238 PRO239 GLY240 ASP241 VAL242 LEU243 VAL244 ILE245 ASN246 SER247 ASN248 GLY249 ASN250 LEU251 ILE252 ALA253 PRO254 ARG255 GLY256 TYR257 PHE258 LYS259 MET260 ARG261 THR262 GLY263 LYS264 SER265 SER266 ILE267 MET268 ARG269 SER270 ASP271 ALA272 PRO273 ILE274 ASP275 THR276 CYS277 ILE278 SER279 GLU280 CYS281 ILE282 THR283 PRO284 ASN285 GLY286 SER287 ILE288 PRO289 ASN290 ASP291 LYS292 PRO293 PHE294 GLN295 ASN296 VAL297 ASN298 LYS299 ILE300 THR301 TYR302 GLY303 ALA304 CYS305 PRO306 LYS307 TYR308 VAL309 LYS310 GLN311 ASN312 THR313 LEU314 LYS315 LEU316 ALA317 THR318 GLY319 MET320 ARG321 ASN322 VAL323 PRO324 GLU325 LYS326 GLN327 THR328
Unit 2 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 ASN12 GLY13 TRP14 GLU15 GLY16 MET17 ILE18 ASP19 GLY20 TRP21 TYR22 GLY23 PHE24 ARG25 HIS26 GLN27 ASN28 SER29 GLU30 GLY31 THR32 GLY33 GLN34 ALA35 ALA36 ASP37 LEU38 LYS39 SER40 THR41 GLN42 ALA43 ALA44 ILE45 ASP46 GLN47 ILE48 ASN49 GLY50 LYS51 LEU52 ASN53 ARG54 VAL55 ILE56 GLU57 LYS58 THR59 ASN60 GLU61 LYS62 PHE63 HIS64 GLN65 ILE66 GLU67 LYS68 GLU69 PHE70 SER71 GLU72 VAL73 GLU74 GLY75 ARG76 ILE77 GLN78 ASP79 LEU80 GLU81 LYS82 TYR83 VAL84 GLU85 ASP86 THR87 LYS88 ILE89 ASP90 LEU91 TRP92 SER93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 ALA101 LEU102 GLU103 ASN104 GLN105 HIS106 THR107 ILE108 ASP109 LEU110 THR111 GLY112 SER113 GLU114 MET115 ASN116 LYS117 LEU118 PHE119 GLU120 LYS121 THR122 ARG123 ARG124 GLN125 LEU126 ARG127 GLU128 ASN129 ALA130 GLU131 GLU132 MET133 GLY134 ASN135 GLY136 CYS137 PHE138 LYS139 ILE140 TYR141 HIS142 LYS143 CYS144 ASP145 ASN146 ALA147 CYS148 ILE149 GLU150 SER151 ILE152 ARG153 ASN154 GLY155 THR156 TYR157 ASP158 HIS159 ASP160 VAL161 TYR162 ARG163 ASP164 GLU165 ALA166 LEU167 ASN168 ASN169 ARG170 PHE171 GLN172 ILE173 LYS174 GLY175
Unit 3 GLN1 ASP2 LEU3 PRO4 GLY5 ASN6 ASP7 ASN8 SER9 THR10 ALA11 THR12 LEU13 CYS14 LEU15 GLY16 HIS17 HIS18 ALA19 VAL20 PRO21 ASN22 GLY23 THR24 LEU25 VAL26 LYS27 THR28 ILE29 THR30 ASP31 ASP32 GLN33 ILE34 GLU35 VAL36 THR37 ASN38 ALA39 THR40 GLU41 LEU42 VAL43 GLN44 SER45 SER46 SER47 THR48 GLY49 LYS50 ILE51 CYS52 ASN53 ASN54 PRO55 HIS56 ARG57 ILE58 LEU59 ASP60 GLY61 ILE62 ASP63 CYS64 THR65 LEU66 ILE67 ASP68 ALA69 LEU70 LEU71 GLY72 ASP73 PRO74 HIS75 CYS76 ASP77 VAL78 PHE79 GLN80 ASN81 GLU82 THR83 TRP84 ASP85 LEU86 PHE87 VAL88 GLU89 ARG90 SER91 LYS92 ALA93 PHE94 SER95 ASN96 CYS97 TYR98 PRO99 TYR100 ASP101 VAL102 PRO103 ASP104 TYR105 ALA106 SER107 LEU108 ARG109 SER110 LEU111 VAL112 ALA113 SER114 SER115 GLY116 THR117 LEU118 GLU119 PHE120 ILE121 THR122 GLU123 GLY124 PHE125 THR126 TRP127 THR128 GLY129 VAL130 THR131 GLN132 ASN133 GLY134 GLY135 SER136 ASN137 ALA138 CYS139 LYS140 ARG141 GLY142 PRO143 GLY144 SER145 GLY146 PHE147 PHE148 SER149 ARG150 LEU151 ASN152 TRP153 LEU154 THR155 LYS156 SER157 GLY158 SER159 THR160 TYR161 PRO162 VAL163 LEU164 ASN165 VAL166 THR167 MET168 PRO169 ASN170 ASN171 ASP172 ASN173 PHE174 ASP175 LYS176 LEU177 TYR178 ILE179 TRP180 GLY181 ILE182 HIS183 HIS184 PRO185 SER186 THR187 ASN188 GLN189 GLU190 GLN191 THR192 SER193 LEU194 TYR195 VAL196 GLN197 ALA198 SER199 GLY200 ARG201 VAL202 THR203 VAL204 SER205 THR206 ARG207 ARG208 SER209 GLN210 GLN211 THR212 ILE213 ILE214 PRO215 ASN216 ILE217 GLY218 SER219 ARG220 PRO221 TRP222 VAL223 ARG224 GLY225 LEU226 SER227 SER228 ARG229 ILE230 SER231 ILE232 TYR233 TRP234 THR235 ILE236 VAL237 LYS238 PRO239 GLY240 ASP241 VAL242 LEU243 VAL244 ILE245 ASN246 SER247 ASN248 GLY249 ASN250 LEU251 ILE252 ALA253 PRO254 ARG255 GLY256 TYR257 PHE258 LYS259 MET260 ARG261 THR262 GLY263 LYS264 SER265 SER266 ILE267 MET268 ARG269 SER270 ASP271 ALA272 PRO273 ILE274 ASP275 THR276 CYS277 ILE278 SER279 GLU280 CYS281 ILE282 THR283 PRO284 ASN285 GLY286 SER287 ILE288 PRO289 ASN290 ASP291 LYS292 PRO293 PHE294 GLN295 ASN296 VAL297 ASN298 LYS299 ILE300 THR301 TYR302 GLY303 ALA304 CYS305 PRO306 LYS307 TYR308 VAL309 LYS310 GLN311 ASN312 THR313 LEU314 LYS315 LEU316 ALA317 THR318 GLY319 MET320 ARG321 ASN322 VAL323 PRO324 GLU325 LYS326 GLN327 THR328
Unit 4 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 ASN12 GLY13 TRP14 GLU15 GLY16 MET17 ILE18 ASP19 GLY20 TRP21 TYR22 GLY23 PHE24 ARG25 HIS26 GLN27 ASN28 SER29 GLU30 GLY31 THR32 GLY33 GLN34 ALA35 ALA36 ASP37 LEU38 LYS39 SER40 THR41 GLN42 ALA43 ALA44 ILE45 ASP46 GLN47 ILE48 ASN49 GLY50 LYS51 LEU52 ASN53 ARG54 VAL55 ILE56 GLU57 LYS58 THR59 ASN60 GLU61 LYS62 PHE63 HIS64 GLN65 ILE66 GLU67 LYS68 GLU69 PHE70 SER71 GLU72 VAL73 GLU74 GLY75 ARG76 ILE77 GLN78 ASP79 LEU80 GLU81 LYS82 TYR83 VAL84 GLU85 ASP86 THR87 LYS88 ILE89 ASP90 LEU91 TRP92 SER93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 ALA101 LEU102 GLU103 ASN104 GLN105 HIS106 THR107 ILE108 ASP109 LEU110 THR111 GLY112 SER113 GLU114 MET115 ASN116 LYS117 LEU118 PHE119 GLU120 LYS121 THR122 ARG123 ARG124 GLN125 LEU126 ARG127 GLU128 ASN129 ALA130 GLU131 GLU132 MET133 GLY134 ASN135 GLY136 CYS137 PHE138 LYS139 ILE140 TYR141 HIS142 LYS143 CYS144 ASP145 ASN146 ALA147 CYS148 ILE149 GLU150 SER151 ILE152 ARG153 ASN154 GLY155 THR156 TYR157 ASP158 HIS159 ASP160 VAL161 TYR162 ARG163 ASP164 GLU165 ALA166 LEU167 ASN168 ASN169 ARG170 PHE171 GLN172 ILE173 LYS174 GLY175
Unit 5 GLN1 ASP2 LEU3 PRO4 GLY5 ASN6 ASP7 ASN8 SER9 THR10 ALA11 THR12 LEU13 CYS14 LEU15 GLY16 HIS17 HIS18 ALA19 VAL20 PRO21 ASN22 GLY23 THR24 LEU25 VAL26 LYS27 THR28 ILE29 THR30 ASP31 ASP32 GLN33 ILE34 GLU35 VAL36 THR37 ASN38 ALA39 THR40 GLU41 LEU42 VAL43 GLN44 SER45 SER46 SER47 THR48 GLY49 LYS50 ILE51 CYS52 ASN53 ASN54 PRO55 HIS56 ARG57 ILE58 LEU59 ASP60 GLY61 ILE62 ASP63 CYS64 THR65 LEU66 ILE67 ASP68 ALA69 LEU70 LEU71 GLY72 ASP73 PRO74 HIS75 CYS76 ASP77 VAL78 PHE79 GLN80 ASN81 GLU82 THR83 TRP84 ASP85 LEU86 PHE87 VAL88 GLU89 ARG90 SER91 LYS92 ALA93 PHE94 SER95 ASN96 CYS97 TYR98 PRO99 TYR100 ASP101 VAL102 PRO103 ASP104 TYR105 ALA106 SER107 LEU108 ARG109 SER110 LEU111 VAL112 ALA113 SER114 SER115 GLY116 THR117 LEU118 GLU119 PHE120 ILE121 THR122 GLU123 GLY124 PHE125 THR126 TRP127 THR128 GLY129 VAL130 THR131 GLN132 ASN133 GLY134 GLY135 SER136 ASN137 ALA138 CYS139 LYS140 ARG141 GLY142 PRO143 GLY144 SER145 GLY146 PHE147 PHE148 SER149 ARG150 LEU151 ASN152 TRP153 LEU154 THR155 LYS156 SER157 GLY158 SER159 THR160 TYR161 PRO162 VAL163 LEU164 ASN165 VAL166 THR167 MET168 PRO169 ASN170 ASN171 ASP172 ASN173 PHE174 ASP175 LYS176 LEU177 TYR178 ILE179 TRP180 GLY181 ILE182 HIS183 HIS184 PRO185 SER186 THR187 ASN188 GLN189 GLU190 GLN191 THR192 SER193 LEU194 TYR195 VAL196 GLN197 ALA198 SER199 GLY200 ARG201 VAL202 THR203 VAL204 SER205 THR206 ARG207 ARG208 SER209 GLN210 GLN211 THR212 ILE213 ILE214 PRO215 ASN216 ILE217 GLY218 SER219 ARG220 PRO221 TRP222 VAL223 ARG224 GLY225 LEU226 SER227 SER228 ARG229 ILE230 SER231 ILE232 TYR233 TRP234 THR235 ILE236 VAL237 LYS238 PRO239 GLY240 ASP241 VAL242 LEU243 VAL244 ILE245 ASN246 SER247 ASN248 GLY249 ASN250 LEU251 ILE252 ALA253 PRO254 ARG255 GLY256 TYR257 PHE258 LYS259 MET260 ARG261 THR262 GLY263 LYS264 SER265 SER266 ILE267 MET268 ARG269 SER270 ASP271 ALA272 PRO273 ILE274 ASP275 THR276 CYS277 ILE278 SER279 GLU280 CYS281 ILE282 THR283 PRO284 ASN285 GLY286 SER287 ILE288 PRO289 ASN290 ASP291 LYS292 PRO293 PHE294 GLN295 ASN296 VAL297 ASN298 LYS299 ILE300 THR301 TYR302 GLY303 ALA304 CYS305 PRO306 LYS307 TYR308 VAL309 LYS310 GLN311 ASN312 THR313 LEU314 LYS315 LEU316 ALA317 THR318 GLY319 MET320 ARG321 ASN322 VAL323 PRO324 GLU325 LYS326 GLN327 THR328
Unit 6 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 ASN12 GLY13 TRP14 GLU15 GLY16 MET17 ILE18 ASP19 GLY20 TRP21 TYR22 GLY23 PHE24 ARG25 HIS26 GLN27 ASN28 SER29 GLU30 GLY31 THR32 GLY33 GLN34 ALA35 ALA36 ASP37 LEU38 LYS39 SER40 THR41 GLN42 ALA43 ALA44 ILE45 ASP46 GLN47 ILE48 ASN49 GLY50 LYS51 LEU52 ASN53 ARG54 VAL55 ILE56 GLU57 LYS58 THR59 ASN60 GLU61 LYS62 PHE63 HIS64 GLN65 ILE66 GLU67 LYS68 GLU69 PHE70 SER71 GLU72 VAL73 GLU74 GLY75 ARG76 ILE77 GLN78 ASP79 LEU80 GLU81 LYS82 TYR83 VAL84 GLU85 ASP86 THR87 LYS88 ILE89 ASP90 LEU91 TRP92 SER93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 ALA101 LEU102 GLU103 ASN104 GLN105 HIS106 THR107 ILE108 ASP109 LEU110 THR111 GLY112 SER113 GLU114 MET115 ASN116 LYS117 LEU118 PHE119 GLU120 LYS121 THR122 ARG123 ARG124 GLN125 LEU126 ARG127 GLU128 ASN129 ALA130 GLU131 GLU132 MET133 GLY134 ASN135 GLY136 CYS137 PHE138 LYS139 ILE140 TYR141 HIS142 LYS143 CYS144 ASP145 ASN146 ALA147 CYS148 ILE149 GLU150 SER151 ILE152 ARG153 ASN154 GLY155 THR156 TYR157 ASP158 HIS159 ASP160 VAL161 TYR162 ARG163 ASP164 GLU165 ALA166 LEU167 ASN168 ASN169 ARG170 PHE171 GLN172 ILE173 LYS174 GLY175
Ligands
Unit 7 NAG1 NAG2 MAN3
Unit 8 NAG1 NAG2 MAN3
Unit 9 NAG1 NAG2 MAN3
Unit 10 SIA329 NAG330 NAG334 NAG348
Unit 11 NAG401
Unit 12 SIA329 NAG330 NAG334 NAG348
Unit 13 NAG401
Unit 14 SIA329 NAG330 NAG334 NAG348
Unit 15 NAG401
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany