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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF UPA IN COMPLEX WITH A CAMELID-DERIVED A FRAGMENT
Keywords UPA, NANOBODY, SERINE PROTEASE, HYDROLASE-INHIBITOR COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5HGG     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UROKINASE-TYPE PLASMINOGEN ACTIVATOR  A 246 1942 0
2  Protein   UROKINASE-TYPE PLASMINOGEN ACTIVATOR  B 246 1942 0
3  Protein   CAMELID DERIVED ANTIBODY FRAGMENT, NB4  S 128 952 0
4  Protein   CAMELID DERIVED ANTIBODY FRAGMENT, NB4  T 127 947 0
5  Ligand   UROKINASE-TYPE PLASMINOGEN ACTIVATOR  A 2 0 12
6  Ligand   UROKINASE-TYPE PLASMINOGEN ACTIVATOR  B 2 0 11
7  Ligand   CAMELID DERIVED ANTIBODY FRAGMENT, NB4  S 4 0 67
8  Ligand   CAMELID DERIVED ANTIBODY FRAGMENT, NB4  T 3 0 37
9 Water     287 0 287
total       1045 5783 414

Proteins
Unit 1 ILE16 ILE17 GLY18 GLY19 GLU20 PHE21 THR22 THR23 ILE24 GLU25 ASN26 GLN27 PRO28 TRP29 PHE30 ALA31 ALA32 ILE33 TYR34 ARG35 ARG36 HIS37 ARG37A GLY37B GLY37C SER37D VAL38 THR39 TYR40 VAL41 CYS42 GLY43 GLY44 SER45 LEU46 ILE47 SER48 PRO49 CYS50 TRP51 VAL52 ILE53 SER54 ALA55 THR56 HIS57 CYS58 PHE59 ILE60 ASP60A TYR60B PRO60C LYS61 LYS62 GLU62A ASP63 TYR64 ILE65 VAL66 TYR67 LEU68 GLY69 ARG70 SER71 ARG72 LEU73 ASN74 SER75 ASN76 THR77 GLN78 GLY79 GLU80 MET81 LYS82 PHE83 GLU84 VAL85 GLU86 ASN87 LEU88 ILE89 LEU90 HIS91 LYS92 ASP93 TYR94 SER95 ALA96 ASP97 THR97A LEU97B ALA98 HIS99 HIS100 ASN101 ASP102 ILE103 ALA104 LEU105 LEU106 LYS107 ILE108 ARG109 SER110 LYS110A GLU110B GLY110C ARG110D CYS111 ALA112 GLN113 PRO114 SER115 ARG116 THR117 ILE118 GLN119 THR120 ILE121 ALA122 LEU123 PRO124 SER125 MET126 TYR127 ASN128 ASP129 PRO130 GLN131 PHE132 GLY133 THR134 SER135 CYS136 GLU137 ILE138 THR139 GLY140 PHE141 GLY142 LYS143 GLU144 GLN145 SER146 THR147 ASP148 TYR149 LEU150 TYR151 PRO152 GLU153 GLN154 LEU155 LYS156 MET157 THR158 VAL159 VAL160 LYS161 LEU162 ILE163 SER164 HIS165 ARG166 GLU167 CYS168 GLN169 GLN170 PRO170A HIS170B TYR171 TYR172 GLY173 SER174 GLU175 VAL176 THR177 THR178 LYS179 MET180 LEU181 CYS182 ALA183 ALA184 ASP185 PRO185A GLN185B TRP186 LYS187 THR188 ASP189 SER190 CYS191 GLN192 GLY193 ASP194 SER195 GLY196 GLY197 PRO198 LEU199 VAL200 CYS201 SER202 LEU203 GLN204 GLY205 ARG206 MET207 THR208 LEU209 THR210 GLY211 ILE212 VAL213 SER214 TRP215 GLY216 ARG217 GLY219 CYS220 ALA221 LEU222 LYS223 ASP223A LYS224 PRO225 GLY226 VAL227 TYR228 THR229 ARG230 VAL231 SER232 HIS233 PHE234 LEU235 PRO236 TRP237 ILE238 ARG239 SER240 HIS241 THR242 LYS243
Unit 2 ILE16 ILE17 GLY18 GLY19 GLU20 PHE21 THR22 THR23 ILE24 GLU25 ASN26 GLN27 PRO28 TRP29 PHE30 ALA31 ALA32 ILE33 TYR34 ARG35 ARG36 HIS37 ARG37A GLY37B GLY37C SER37D VAL38 THR39 TYR40 VAL41 CYS42 GLY43 GLY44 SER45 LEU46 ILE47 SER48 PRO49 CYS50 TRP51 VAL52 ILE53 SER54 ALA55 THR56 HIS57 CYS58 PHE59 ILE60 ASP60A TYR60B PRO60C LYS61 LYS62 GLU62A ASP63 TYR64 ILE65 VAL66 TYR67 LEU68 GLY69 ARG70 SER71 ARG72 LEU73 ASN74 SER75 ASN76 THR77 GLN78 GLY79 GLU80 MET81 LYS82 PHE83 GLU84 VAL85 GLU86 ASN87 LEU88 ILE89 LEU90 HIS91 LYS92 ASP93 TYR94 SER95 ALA96 ASP97 THR97A LEU97B ALA98 HIS99 HIS100 ASN101 ASP102 ILE103 ALA104 LEU105 LEU106 LYS107 ILE108 ARG109 SER110 LYS110A GLU110B GLY110C ARG110D CYS111 ALA112 GLN113 PRO114 SER115 ARG116 THR117 ILE118 GLN119 THR120 ILE121 ALA122 LEU123 PRO124 SER125 MET126 TYR127 ASN128 ASP129 PRO130 GLN131 PHE132 GLY133 THR134 SER135 CYS136 GLU137 ILE138 THR139 GLY140 PHE141 GLY142 LYS143 GLU144 GLN145 SER146 THR147 ASP148 TYR149 LEU150 TYR151 PRO152 GLU153 GLN154 LEU155 LYS156 MET157 THR158 VAL159 VAL160 LYS161 LEU162 ILE163 SER164 HIS165 ARG166 GLU167 CYS168 GLN169 GLN170 PRO170A HIS170B TYR171 TYR172 GLY173 SER174 GLU175 VAL176 THR177 THR178 LYS179 MET180 LEU181 CYS182 ALA183 ALA184 ASP185 PRO185A GLN185B TRP186 LYS187 THR188 ASP189 SER190 CYS191 GLN192 GLY193 ASP194 SER195 GLY196 GLY197 PRO198 LEU199 VAL200 CYS201 SER202 LEU203 GLN204 GLY205 ARG206 MET207 THR208 LEU209 THR210 GLY211 ILE212 VAL213 SER214 TRP215 GLY216 ARG217 GLY219 CYS220 ALA221 LEU222 LYS223 ASP223A LYS224 PRO225 GLY226 VAL227 TYR228 THR229 ARG230 VAL231 SER232 HIS233 PHE234 LEU235 PRO236 TRP237 ILE238 ARG239 SER240 HIS241 THR242 LYS243
Unit 3 GLN1 VAL2 GLN3 LEU4 GLN5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 ALA14 GLY15 GLY16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 LEU29 ASP30 SER31 TYR32 ALA33 ILE34 GLY35 TRP36 PHE37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLU44 ARG45 GLU46 GLY47 VAL48 SER49 CYS50 ILE51 SER52 ALA53 SER54 GLY55 GLY56 SER57 THR58 ASN59 TYR60 ALA61 ASP62 SER63 VAL64 LYS65 GLY66 ARG67 PHE68 THR69 ILE70 SER71 ARG72 ASP73 ASN74 ALA75 LYS76 ASN77 THR78 VAL79 TYR80 LEU81 GLN82 MET83 ASN84 SER85 LEU86 LYS87 SER88 GLU89 ASP90 THR91 ALA92 VAL93 TYR94 TYR95 CYS96 ALA97 ALA98 ASP99 HIS100 PRO101 GLY102 LEU103 CYS104 THR105 SER106 GLU107 SER108 GLY109 ARG110 ARG111 ARG112 TYR113 LEU114 GLU115 VAL116 TRP117 GLY118 GLN119 GLY120 THR121 GLN122 VAL123 THR124 VAL125 SER126 SER127 ALA128
Unit 4 GLN1 VAL2 GLN3 LEU4 GLN5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 ALA14 GLY15 GLY16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 LEU29 ASP30 SER31 TYR32 ALA33 ILE34 GLY35 TRP36 PHE37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLU44 ARG45 GLU46 GLY47 VAL48 SER49 CYS50 ILE51 SER52 ALA53 SER54 GLY55 GLY56 SER57 THR58 ASN59 TYR60 ALA61 ASP62 SER63 VAL64 LYS65 GLY66 ARG67 PHE68 THR69 ILE70 SER71 ARG72 ASP73 ASN74 ALA75 LYS76 ASN77 THR78 VAL79 TYR80 LEU81 GLN82 MET83 ASN84 SER85 LEU86 LYS87 SER88 GLU89 ASP90 THR91 ALA92 VAL93 TYR94 TYR95 CYS96 ALA97 ALA98 ASP99 HIS100 PRO101 GLY102 LEU103 CYS104 THR105 SER106 GLU107 SER108 GLY109 ARG110 ARG111 ARG112 TYR113 LEU114 GLU115 VAL116 TRP117 GLY118 GLN119 GLY120 THR121 GLN122 VAL123 THR124 VAL125 SER126 SER127

Ligands
Unit 5 GOL301 GOL302
Unit 6 GOL301 SO4302
Unit 7 TWN201 TWN202 SO4203 MES204
Unit 8 TWN201 GOL202 GOL203

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany