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Sequence, Chains, Asymmetric and Biological Units

Title THERMOTOGA MARITIMA CCA-ADDING ENZYME COMPLEXED WITH TRNA_CC
Keywords TRNA, CCA-ADDING ENZYME, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5HC9     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TRNA NUCLEOTIDYL TRANSFERASE-RELATED PROTEIN  A 425 3502 0
2  Protein   TRNA NUCLEOTIDYL TRANSFERASE-RELATED PROTEIN  B 410 3378 0
3  RNA    C 76 1623 0
4  RNA    D 76 1623 0
5  Ligand   TRNA NUCLEOTIDYL TRANSFERASE-RELATED PROTEIN  A 1 0 1
6  Ligand   TRNA NUCLEOTIDYL TRANSFERASE-RELATED PROTEIN  B 1 0 1
total       989 10126 2

Proteins
Unit 1 MET1 GLN2 ILE3 PHE4 ARG5 ASP6 VAL7 SER8 LYS9 LEU10 LEU11 VAL12 GLU13 ARG14 VAL15 ASP16 PRO17 LYS18 ILE19 LEU20 ASN21 LEU22 PHE23 ARG24 LEU25 LEU26 GLY27 LYS28 PHE29 GLY30 ASP31 GLU32 VAL33 ASN34 MET35 PRO36 VAL37 TYR38 VAL39 VAL40 GLY41 GLY42 PHE43 VAL44 ARG45 ASP46 LEU47 LEU48 LEU49 GLY50 ILE51 LYS52 ASN53 LEU54 ASP55 ILE56 ASP57 ILE58 VAL59 VAL60 GLU61 GLY62 ASN63 ALA64 LEU65 GLU66 PHE67 ALA68 GLU69 TYR70 ALA71 LYS72 ARG73 PHE74 LEU75 PRO76 GLY77 LYS78 LEU79 VAL80 LYS81 HIS82 ASP83 LYS84 PHE85 MET86 THR87 ALA88 SER89 LEU90 PHE91 LEU92 LYS93 GLY94 GLY95 LEU96 ARG97 ILE98 ASP99 ILE100 ALA101 THR102 ALA103 ARG104 LEU105 GLU106 TYR107 TYR108 GLU109 SER110 PRO111 ALA112 LYS113 LEU114 PRO115 ASP116 VAL117 GLU118 MET119 SER120 THR121 ILE122 LYS123 LYS124 ASP125 LEU126 TYR127 ARG128 ARG129 ASP130 PHE131 THR132 ILE133 ASN134 ALA135 MET136 ALA137 ILE138 LYS139 LEU140 ASN141 PRO142 LYS143 ASP144 PHE145 GLY146 LEU147 LEU148 ILE149 ASP150 PHE151 PHE152 GLY153 GLY154 TYR155 ARG156 ASP157 LEU158 LYS159 GLU160 GLY161 VAL162 ILE163 ARG164 VAL165 LEU166 HIS167 THR168 LEU169 SER170 PHE171 VAL172 ASP173 ASP174 PRO175 THR176 ARG177 ILE178 LEU179 ARG180 ALA181 ILE182 ARG183 PHE184 GLU185 GLN186 ARG187 PHE188 ASP189 PHE190 ARG191 ILE192 GLU193 GLU194 THR195 THR196 GLU197 ARG198 LEU199 LEU200 LYS201 GLN202 ALA203 VAL204 GLU205 GLU206 GLY207 TYR208 LEU209 GLU210 ARG211 THR212 THR213 GLY214 PRO215 ARG216 LEU217 ARG218 GLN219 GLU220 LEU221 GLU222 LYS223 ILE224 LEU225 GLU226 GLU227 LYS228 ASN229 PRO230 LEU231 LYS232 SER233 ILE234 ARG235 ARG236 MET237 ALA238 GLN239 PHE240 ASP241 VAL242 ILE243 LYS244 HIS245 LEU246 PHE247 PRO248 LYS249 THR250 TYR251 TYR252 THR253 PRO254 SER255 MET256 ASP257 GLU258 LYS259 MET260 GLU261 ASN262 LEU263 PHE264 ARG265 ASN266 ILE267 PRO268 TRP269 VAL270 GLU271 GLU272 ASN273 PHE274 GLY275 GLU276 VAL277 ASP278 ARG279 PHE280 TYR281 ALA282 VAL283 LEU284 HIS285 VAL286 PHE287 LEU288 GLU289 PHE290 TYR291 ASP292 ASP293 GLU294 SER295 TRP296 LYS297 GLU298 VAL299 ARG300 ASP301 ARG302 TYR303 SER304 LEU305 ARG306 ARG307 ASN308 LEU309 ILE310 ASN311 GLU312 ILE313 ARG314 HIS315 VAL316 GLU317 LYS318 SER319 ALA320 PRO321 ALA322 LEU323 LEU324 GLU325 MET326 LEU327 SER328 GLU329 ARG330 VAL331 PRO332 ALA333 SER334 PHE335 VAL336 TYR337 PRO338 LEU339 VAL340 LYS341 GLY342 VAL343 SER344 ASN345 GLU346 THR347 ILE348 CYS349 HIS350 PHE351 LEU352 ALA353 TYR354 LEU355 SER356 GLY357 GLU358 LYS359 GLU360 GLY361 LEU362 PHE363 LYS364 SER365 TYR366 LEU367 LEU368 LYS369 ILE370 LYS371 ASN372 THR373 LYS374 LEU375 GLU376 LYS377 ILE378 ASN379 GLY380 GLU381 TYR382 LEU383 ILE384 ARG385 LYS386 GLY387 ILE388 THR389 SER390 GLY391 LYS392 ILE393 ILE394 GLY395 GLU396 VAL397 LEU398 GLU399 LYS400 ILE401 LEU402 MET403 LYS404 LYS405 LEU406 ASP407 GLY408 ASP409 THR410 ARG411 ASP412 GLU413 GLU414 GLU415 ILE416 LEU417 GLU418 GLU419 VAL420 LEU421 ALA422 SER423 LEU424 GLU425
Unit 2 MET1 GLN2 ILE3 PHE4 ARG5 ASP6 VAL7 SER8 LYS9 LEU10 LEU11 VAL12 GLU13 ARG14 VAL15 ASP16 PRO17 LYS18 ILE19 LEU20 ASN21 LEU22 PHE23 ARG24 LEU25 LEU26 GLY27 LYS28 PHE29 GLY30 ASP31 GLU32 VAL33 ASN34 MET35 PRO36 VAL37 TYR38 VAL39 VAL40 GLY41 GLY42 PHE43 VAL44 ARG45 ASP46 LEU47 LEU48 LEU49 GLY50 ILE51 LYS52 ASN53 LEU54 ASP55 ILE56 ASP57 ILE58 VAL59 VAL60 GLU61 GLY62 ASN63 ALA64 LEU65 GLU66 PHE67 ALA68 GLU69 TYR70 ALA71 LYS72 ARG73 PHE74 LEU75 PRO76 GLY77 LYS78 LEU79 VAL80 LYS81 HIS82 ASP83 LYS84 PHE85 MET86 THR87 ALA88 SER89 LEU90 PHE91 LEU92 LYS93 GLY94 GLY95 LEU96 ARG97 ILE98 ASP99 ILE100 ALA101 THR102 ALA103 ARG104 SER120 THR121 ILE122 LYS123 LYS124 ASP125 LEU126 TYR127 ARG128 ARG129 ASP130 PHE131 THR132 ILE133 ASN134 ALA135 MET136 ALA137 ILE138 LYS139 LEU140 ASN141 PRO142 LYS143 ASP144 PHE145 GLY146 LEU147 LEU148 ILE149 ASP150 PHE151 PHE152 GLY153 GLY154 TYR155 ARG156 ASP157 LEU158 LYS159 GLU160 GLY161 VAL162 ILE163 ARG164 VAL165 LEU166 HIS167 THR168 LEU169 SER170 PHE171 VAL172 ASP173 ASP174 PRO175 THR176 ARG177 ILE178 LEU179 ARG180 ALA181 ILE182 ARG183 PHE184 GLU185 GLN186 ARG187 PHE188 ASP189 PHE190 ARG191 ILE192 GLU193 GLU194 THR195 THR196 GLU197 ARG198 LEU199 LEU200 LYS201 GLN202 ALA203 VAL204 GLU205 GLU206 GLY207 TYR208 LEU209 GLU210 ARG211 THR212 THR213 GLY214 PRO215 ARG216 LEU217 ARG218 GLN219 GLU220 LEU221 GLU222 LYS223 ILE224 LEU225 GLU226 GLU227 LYS228 ASN229 PRO230 LEU231 LYS232 SER233 ILE234 ARG235 ARG236 MET237 ALA238 GLN239 PHE240 ASP241 VAL242 ILE243 LYS244 HIS245 LEU246 PHE247 PRO248 LYS249 THR250 TYR251 TYR252 THR253 PRO254 SER255 MET256 ASP257 GLU258 LYS259 MET260 GLU261 ASN262 LEU263 PHE264 ARG265 ASN266 ILE267 PRO268 TRP269 VAL270 GLU271 GLU272 ASN273 PHE274 GLY275 GLU276 VAL277 ASP278 ARG279 PHE280 TYR281 ALA282 VAL283 LEU284 HIS285 VAL286 PHE287 LEU288 GLU289 PHE290 TYR291 ASP292 ASP293 GLU294 SER295 TRP296 LYS297 GLU298 VAL299 ARG300 ASP301 ARG302 TYR303 SER304 LEU305 ARG306 ARG307 ASN308 LEU309 ILE310 ASN311 GLU312 ILE313 ARG314 HIS315 VAL316 GLU317 LYS318 SER319 ALA320 PRO321 ALA322 LEU323 LEU324 GLU325 MET326 LEU327 SER328 GLU329 ARG330 VAL331 PRO332 ALA333 SER334 PHE335 VAL336 TYR337 PRO338 LEU339 VAL340 LYS341 GLY342 VAL343 SER344 ASN345 GLU346 THR347 ILE348 CYS349 HIS350 PHE351 LEU352 ALA353 TYR354 LEU355 SER356 GLY357 GLU358 LYS359 GLU360 GLY361 LEU362 PHE363 LYS364 SER365 TYR366 LEU367 LEU368 LYS369 ILE370 LYS371 ASN372 THR373 LYS374 LEU375 GLU376 LYS377 ILE378 ASN379 GLY380 GLU381 TYR382 LEU383 ILE384 ARG385 LYS386 GLY387 ILE388 THR389 SER390 GLY391 LYS392 ILE393 ILE394 GLY395 GLU396 VAL397 LEU398 GLU399 LYS400 ILE401 LEU402 MET403 LYS404 LYS405 LEU406 ASP407 GLY408 ASP409 THR410 ARG411 ASP412 GLU413 GLU414 GLU415 ILE416 LEU417 GLU418 GLU419 VAL420 LEU421 ALA422 SER423 LEU424 GLU425

Nucleic acids
Unit 3 G1 G2 C3 C4 A5 G6 G7 U8 A9 G10 C11 U12 C13 A14 G15 U16 U17 G18 G19 U20 A21 G22 A23 G24 C25 A26 C27 U28 G29 G30 A31 C32 U33 G34 A35 A36 A37 A38 U39 C40 C41 A42 G43 G44 U45 G46 U47 C48 G49 G50 C51 G52 G53 U54 U55 C56 G57 A58 U59 U60 C61 C62 G63 C64 C65 C66 C67 U68 G69 G70 C71 C72 A73 C74 C75 A76
Unit 4 G1 G2 C3 C4 A5 G6 G7 U8 A9 G10 C11 U12 C13 A14 G15 U16 U17 G18 G19 U20 A21 G22 A23 G24 C25 A26 C27 U28 G29 G30 A31 C32 U33 G34 A35 A36 A37 A38 U39 C40 C41 A42 G43 G44 U45 G46 U47 C48 G49 G50 C51 G52 G53 U54 U55 C56 G57 A58 U59 U60 C61 C62 G63 C64 C65 C66 C67 U68 G69 G70 C71 C72 A73 C74 C75 A76

Ligands
Unit 5 MG1001
Unit 6 MG1001

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany