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Sequence, Chains, Asymmetric and Biological Units

Title RNA PRIMER-TEMPLATE COMPLEX WITH 2-METHYLIMIDAZOLE-ACTIVATED ANALOGUE-2 BINDING SITES
Keywords RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5HBX     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 14 209 88
2  RNA    B 14 209 88
3  RNA    C 14 209 88
4  RNA    D 14 209 88
5  Ligand   RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG) P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3')  A 2 0 58
6  Ligand   RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG) P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3')  B 2 0 58
7  Ligand   RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG) P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3')  C 2 0 58
8  Ligand   RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG) P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3')  D 2 0 58
9 Water     91 0 91
total       155 836 675

Nucleic acids
Unit 1 LCC1 LCC2 LCA3 LCG4 A5 C6 U7 U8 A9 A10 G11 U12 C13 U14
Unit 2 LCC1 LCC2 LCA3 LCG4 A5 C6 U7 U8 A9 A10 G11 U12 C13 U14
Unit 3 LCC1 LCC2 LCA3 LCG4 A5 C6 U7 U8 A9 A10 G11 U12 C13 U14
Unit 4 LCC1 LCC2 LCA3 LCG4 A5 C6 U7 U8 A9 A10 G11 U12 C13 U14

Ligands
Unit 5 PZG101 PZG102
Unit 6 PZG101 PZG102
Unit 7 PZG101 PZG102
Unit 8 PZG101 PZG102

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany