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| Title | CRYSTAL STRUCTURE OF WD40 REPEAT DOMAINS OF GEMIN5 IN COMPLE NT U4 SNRNA FRAGMENT | |
| Keywords | WD REPEAT, GEMIN5, SMN, U4 SNRNA, RNA BINDING, SPLICING-RNA | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 5H1L | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | GEM-ASSOCIATED PROTEIN 5 | A | 682 | 5353 | 0 |
| 2 | RNA | B | 7 | 142 | 0 | |
| 3 | Ligand | GEM-ASSOCIATED PROTEIN 5 | A | 1 | 0 | 6 |
| 4 | Water | 417 | 0 | 417 | ||
| total | 1107 | 5495 | 423 |
| Unit 1 | GLU4 PRO5 ARG6 THR7 LEU8 PRO9 PRO10 SER11 PRO12 ASN13 TRP14 TYR15 CYS16 ALA17 ARG18 CYS19 SER20 ASP21 ALA22 VAL23 PRO24 GLY25 GLY26 LEU27 PHE28 GLY29 PHE30 ALA31 ALA32 ARG33 THR34 SER35 VAL36 PHE37 LEU38 VAL39 ARG40 VAL41 GLY42 PRO43 GLY44 ALA45 GLY46 GLU47 SER48 PRO49 GLY50 THR51 PRO52 PRO53 PHE54 ARG55 VAL56 ILE57 GLY58 GLU59 LEU60 VAL61 GLY62 HIS63 THR64 GLU65 ARG66 VAL67 SER68 GLY69 PHE70 THR71 PHE72 SER73 HIS74 HIS75 PRO76 GLY77 GLN78 TYR79 ASN80 LEU81 CYS82 ALA83 THR84 SER85 SER86 ASP87 ASP88 GLY89 THR90 VAL91 LYS92 ILE93 TRP94 ASP95 VAL96 GLU97 THR98 LYS99 THR100 VAL101 VAL102 THR103 GLU104 HIS105 ALA106 LEU107 HIS108 GLN109 HIS110 THR111 ILE112 SER113 THR114 LEU115 HIS116 TRP117 SER118 PRO119 ARG120 VAL121 LYS122 ASP123 LEU124 ILE125 VAL126 SER127 GLY128 ASP129 GLU130 LYS131 GLY132 VAL133 VAL134 PHE135 CYS136 TYR137 TRP138 PHE139 ASN140 ARG141 ASN142 ASP143 SER144 GLN145 HIS146 LEU147 PHE148 ILE149 GLU150 PRO151 ARG152 THR153 ILE154 PHE155 CYS156 LEU157 THR158 CYS159 SER160 PRO161 HIS162 HIS163 GLU164 ASP165 LEU166 VAL167 ALA168 ILE169 GLY170 TYR171 LYS172 ASP173 GLY174 ILE175 VAL176 VAL177 ILE178 ILE179 ASP180 ILE181 SER182 LYS183 LYS184 GLY185 GLU186 VAL187 ILE188 HIS189 ARG190 LEU191 ARG192 GLY193 HIS194 ASP195 ASP196 GLU197 ILE198 HIS199 SER200 ILE201 ALA202 TRP203 CYS204 PRO205 LEU206 PRO207 GLY208 GLU209 GLY239 CYS240 TYR241 LEU242 ALA243 THR244 GLY245 SER246 LYS247 ASP248 GLN249 THR250 ILE251 ARG252 ILE253 TRP254 SER255 CYS256 SER257 ARG258 GLY259 ARG260 GLY261 VAL262 MET263 ILE264 LEU265 LYS266 LEU267 PRO268 PHE269 LEU270 LYS271 ARG272 ARG273 GLY274 GLY275 GLY276 ILE277 ASP278 PRO279 THR280 VAL281 LYS282 GLU283 ARG284 LEU285 TRP286 LEU287 THR288 LEU289 HIS290 TRP291 PRO292 SER293 ASN294 GLN295 PRO296 THR297 GLN298 LEU299 VAL300 SER301 SER302 CYS303 PHE304 GLY305 GLY306 GLU307 LEU308 LEU309 GLN310 TRP311 ASP312 LEU313 THR314 GLN315 SER316 TRP317 ARG318 ARG319 LYS320 TYR321 THR322 LEU323 PHE324 SER325 ALA326 SER327 SER328 GLU329 GLY330 GLN331 ASN332 HIS333 SER334 ARG335 ILE336 VAL337 PHE338 ASN339 LEU340 CYS341 PRO342 LEU343 GLN344 THR345 GLU346 ASP347 ASP348 LYS349 GLN350 LEU351 LEU352 LEU353 SER354 THR355 SER356 MET357 ASP358 ARG359 ASP360 VAL361 LYS362 CYS363 TRP364 ASP365 ILE366 ALA367 THR368 LEU369 GLU370 CYS371 SER372 TRP373 THR374 LEU375 PRO376 SER377 LEU378 GLY379 GLY380 PHE381 ALA382 TYR383 SER384 LEU385 ALA386 PHE387 SER388 SER389 VAL390 ASP391 ILE392 GLY393 SER394 LEU395 ALA396 ILE397 GLY398 VAL399 GLY400 ASP401 GLY402 MET403 ILE404 ARG405 VAL406 TRP407 ASN408 THR409 LEU410 SER411 ILE412 LYS413 ASN414 ASN415 TYR416 ASP417 VAL418 LYS419 ASN420 PHE421 TRP422 GLN423 GLY424 VAL425 LYS426 SER427 LYS428 VAL429 THR430 ALA431 LEU432 CYS433 TRP434 HIS435 PRO436 THR437 LYS438 GLU439 GLY440 CYS441 LEU442 ALA443 PHE444 GLY445 THR446 ASP447 ASP448 GLY449 LYS450 VAL451 GLY452 LEU453 TYR454 ASP455 THR456 TYR457 SER458 ASN459 LYS460 PRO461 PRO462 GLN463 ILE464 SER465 SER466 THR467 TYR468 HIS469 LYS470 LYS471 THR472 VAL473 TYR474 THR475 LEU476 ALA477 TRP478 GLY479 PRO480 PRO481 VAL482 PRO483 PRO484 MET485 SER486 SER495 LEU496 ALA497 LEU498 TYR499 SER500 CYS501 GLY502 GLY503 GLU504 GLY505 ILE506 VAL507 LEU508 GLN509 HIS510 ASN511 PRO512 TRP513 LYS514 LEU515 SER516 GLY517 GLU518 ALA519 PHE520 ASP521 ILE522 ASN523 LYS524 LEU525 ILE526 ARG527 ASP528 THR529 ASN530 SER531 ILE532 LYS533 TYR534 LYS535 LEU536 PRO537 VAL538 HIS539 THR540 GLU541 ILE542 SER543 TRP544 LYS545 ALA546 ASP547 GLY548 LYS549 ILE550 MET551 ALA552 LEU553 GLY554 ASN555 GLU556 ASP557 GLY558 SER559 ILE560 GLU561 ILE562 PHE563 GLN564 ILE565 PRO566 ASN567 LEU568 LYS569 LEU570 ILE571 CYS572 THR573 ILE574 GLN575 GLN576 HIS577 HIS578 LYS579 LEU580 VAL581 ASN582 THR583 ILE584 SER585 TRP586 HIS587 HIS588 GLU589 HIS590 GLY591 SER592 GLN593 PRO594 GLU595 LEU596 SER597 TYR598 LEU599 MET600 ALA601 SER602 GLY603 SER604 ASN605 ASN606 ALA607 VAL608 ILE609 TYR610 VAL611 HIS612 ASN613 LEU614 LYS615 THR616 VAL617 ILE618 GLU619 SER620 SER621 PRO622 GLU623 SER624 PRO625 VAL626 THR627 ILE628 THR629 GLU630 PRO631 TYR632 ARG633 THR634 LEU635 SER636 GLY637 HIS638 THR639 ALA640 LYS641 ILE642 THR643 SER644 VAL645 ALA646 TRP647 SER648 PRO649 HIS650 HIS651 ASP652 GLY653 ARG654 LEU655 VAL656 SER657 ALA658 SER659 TYR660 ASP661 GLY662 THR663 ALA664 GLN665 VAL666 TRP667 ASP668 ALA669 LEU670 ARG671 GLU672 GLU673 PRO674 LEU675 CYS676 ASN677 PHE678 ARG679 GLY680 HIS681 ARG682 GLY683 ARG684 LEU685 LEU686 CYS687 VAL688 ALA689 TRP690 SER691 PRO692 LEU693 ASP694 PRO695 ASP696 CYS697 ILE698 TYR699 SER700 GLY701 ALA702 ASP703 ASP704 PHE705 CYS706 VAL707 HIS708 LYS709 TRP710 LEU711 THR712 SER713 MET714 GLN715 ASP716 HIS717 SER718 ARG719 PRO720 PRO721 GLN722 |
| Unit 2 | A1 U2 U3 U4 U5 U6 G7 |
| Unit 3 | GOL801 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |