5GZ3 - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF D-AMINO ACID DEHYDROGENASE IN COMPLEX WITH NADP
• Keywords: ROSSMANN FOLD, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5GZ3	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	MESO-DIAMINOPIMELATE D-DEHYDROGENASE	A	325	2518	0
2	Protein	MESO-DIAMINOPIMELATE D-DEHYDROGENASE	B	319	2465	0
3	Ligand	MESO-DIAMINOPIMELATE D-DEHYDROGENASE	A	4	0	60
4	Ligand	MESO-DIAMINOPIMELATE D-DEHYDROGENASE	B	2	0	52
5	Water			370	0	370
total				1020	4983	482

Proteins

Unit 1

SER 2 LYS 3 ILE 4 ARG 5 ILE 6 GLY 7 ILE 8 VAL 9 GLY 10 TYR 11 GLY 12 ASN 13 LEU 14 GLY 15 ARG 16 GLY 17 VAL 18 GLU 19 ALA 20 ALA 21 ILE 22 GLN 23 GLN 24 ASN 25 PRO 26 ASP 27 MET 28 GLU 29 LEU 30 VAL 31 ALA 32 VAL 33 PHE 34 THR 35 ARG 36 ARG 37 ASP 38 PRO 39 LYS 40 THR 41 VAL 42 ALA 43 VAL 44 LYS 45 SER 46 ASN 47 VAL 48 LYS 49 VAL 50 LEU 51 HIS 52 VAL 53 ASP 54 ASP 55 ALA 56 GLN 57 SER 58 TYR 59 LYS 60 ASP 61 GLU 62 ILE 63 ASP 64 VAL 65 MET 66 ILE 67 LEU 68 CYS 69 GLY 70 GLY 71 SER 72 ALA 73 THR 74 ASP 75 LEU 76 PRO 77 GLU 78 GLN 79 GLY 80 PRO 81 TYR 82 PHE 83 ALA 84 GLN 85 TYR 86 PHE 87 ASN 88 THR 89 ILE 90 ASP 91 SER 92 PHE 93 ALA 94 THR 95 HIS 96 ALA 97 ARG 98 ILE 99 PRO 100 ASP 101 TYR 102 PHE 103 ASP 104 ALA 105 VAL 106 ASN 107 ALA 108 ALA 109 ALA 110 GLU 111 GLN 112 SER 113 GLY 114 LYS 115 VAL 116 ALA 117 ILE 118 ILE 119 SER 120 VAL 121 GLY 122 TRP 123 ASP 124 PRO 125 GLY 126 LEU 127 PHE 128 SER 129 LEU 130 ASN 131 ARG 132 LEU 133 LEU 134 GLY 135 GLU 136 VAL 137 VAL 138 LEU 139 PRO 140 VAL 141 GLY 142 ASN 143 THR 144 TYR 145 THR 146 PHE 147 TRP 148 GLY 149 LYS 150 GLY 151 VAL 152 SER 153 LEU 154 GLY 155 HIS 156 SER 157 GLY 158 ALA 159 ILE 160 ARG 161 ARG 162 ILE 163 GLN 164 GLY 165 VAL 166 LYS 167 ASN 168 ALA 169 VAL 170 GLN 171 TYR 172 ILE 173 ILE 174 PRO 175 ILE 176 ASP 177 GLU 178 ALA 179 VAL 180 ASN 181 ARG 182 VAL 183 ARG 184 SER 185 GLY 186 GLU 187 ASN 188 PRO 189 GLU 190 LEU 191 SER 192 THR 193 ARG 194 GLU 195 LYS 196 HIS 197 ALA 198 MET 199 GLU 200 CYS 201 PHE 202 VAL 203 VAL 204 LEU 205 GLU 206 GLU 207 GLY 208 ALA 209 ASP 210 PRO 211 ALA 212 LYS 213 VAL 214 GLU 215 HIS 216 GLU 217 ILE 218 LYS 219 THR 220 MET 221 PRO 222 ASN 223 PHE 224 PHE 225 ASP 226 GLU 227 TYR 228 ASP 229 THR 230 THR 231 VAL 232 HIS 233 PHE 234 ILE 235 SER 236 GLU 237 GLU 238 GLU 239 LEU 240 LYS 241 GLN 242 ASN 243 HIS 244 SER 245 GLY 246 MET 247 PRO 248 ASN 249 GLY 250 GLY 251 PHE 252 VAL 253 ILE 254 ARG 255 SER 256 GLY 257 LYS 258 SER 259 ASP 260 GLU 261 GLY 262 HIS 263 LYS 264 GLN 265 ILE 266 ILE 267 GLU 268 PHE 269 SER 270 LEU 271 ASN 272 LEU 273 GLU 274 SER 275 ASN 276 PRO 277 MET 278 PHE 279 THR 280 SER 281 SER 282 ALA 283 LEU 284 VAL 285 ALA 286 TYR 287 ALA 288 ARG 289 ALA 290 ALA 291 TYR 292 ARG 293 LEU 294 SER 295 GLN 296 ASN 297 GLY 298 ASP 299 LYS 300 GLY 301 ALA 302 LYS 303 THR 304 VAL 305 PHE 306 ASP 307 ILE 308 PRO 309 PHE 310 GLY 311 LEU 312 LEU 313 SER 314 PRO 315 LYS 316 SER 317 PRO 318 GLU 319 ASP 320 LEU 321 ARG 322 LYS 323 GLU 324 LEU 325 LEU 326

Unit 2

SER 2 LYS 3 ILE 4 ARG 5 ILE 6 GLY 7 ILE 8 VAL 9 GLY 10 TYR 11 GLY 12 ASN 13 LEU 14 GLY 15 ARG 16 GLY 17 VAL 18 GLU 19 ALA 20 ALA 21 ILE 22 GLN 23 GLN 24 ASN 25 PRO 26 ASP 27 MET 28 GLU 29 LEU 30 VAL 31 ALA 32 VAL 33 PHE 34 THR 35 ARG 36 ARG 37 ASP 38 PRO 39 LYS 40 THR 41 VAL 42 ALA 43 VAL 44 LYS 45 SER 46 ASN 47 VAL 48 LYS 49 VAL 50 LEU 51 HIS 52 VAL 53 ASP 54 ASP 55 ALA 56 GLN 57 SER 58 TYR 59 LYS 60 ASP 61 GLU 62 ILE 63 ASP 64 VAL 65 MET 66 ILE 67 LEU 68 CYS 69 GLY 70 GLY 71 SER 72 ALA 73 THR 74 ASP 75 LEU 76 PRO 77 GLU 78 GLN 79 GLY 80 PRO 81 TYR 82 PHE 83 ALA 84 GLN 85 TYR 86 PHE 87 ASN 88 THR 89 ILE 90 ASP 91 SER 92 PHE 93 ALA 94 THR 95 HIS 96 ALA 97 ARG 98 ILE 99 PRO 100 ASP 101 TYR 102 PHE 103 ASP 104 ALA 105 VAL 106 ASN 107 ALA 108 ALA 109 ALA 110 GLU 111 GLN 112 SER 113 GLY 114 LYS 115 VAL 116 ALA 117 ILE 118 ILE 119 SER 120 VAL 121 GLY 122 TRP 123 ASP 124 PRO 125 GLY 126 LEU 127 PHE 128 SER 129 LEU 130 ASN 131 ARG 132 LEU 133 LEU 134 GLY 135 GLU 136 VAL 137 VAL 138 LEU 139 PRO 140 VAL 141 GLY 142 ASN 143 THR 144 TYR 145 THR 146 PHE 147 TRP 148 GLY 149 LYS 150 GLY 151 VAL 152 SER 153 LEU 154 GLY 155 HIS 156 SER 157 GLY 158 ALA 159 ILE 160 ARG 161 ARG 162 ILE 163 GLN 164 GLY 165 VAL 166 LYS 167 ASN 168 ALA 169 VAL 170 GLN 171 TYR 172 ILE 173 ILE 174 PRO 175 ILE 176 ASP 177 GLU 178 ALA 179 VAL 180 ASN 181 ARG 182 VAL 183 ARG 184 SER 185 GLY 186 GLU 187 ASN 188 PRO 189 GLU 190 LEU 191 SER 192 THR 193 ARG 194 GLU 195 LYS 196 HIS 197 ALA 198 MET 199 GLU 200 CYS 201 PHE 202 VAL 203 VAL 204 LEU 205 GLU 206 GLU 207 GLY 208 ALA 209 ASP 210 PRO 211 ALA 212 LYS 213 VAL 214 GLU 215 HIS 216 GLU 217 ILE 218 LYS 219 THR 220 GLU 227 TYR 228 ASP 229 THR 230 THR 231 VAL 232 HIS 233 PHE 234 ILE 235 SER 236 GLU 237 GLU 238 GLU 239 LEU 240 LYS 241 GLN 242 ASN 243 HIS 244 SER 245 GLY 246 MET 247 PRO 248 ASN 249 GLY 250 GLY 251 PHE 252 VAL 253 ILE 254 ARG 255 SER 256 GLY 257 LYS 258 SER 259 ASP 260 GLU 261 GLY 262 HIS 263 LYS 264 GLN 265 ILE 266 ILE 267 GLU 268 PHE 269 SER 270 LEU 271 ASN 272 LEU 273 GLU 274 SER 275 ASN 276 PRO 277 MET 278 PHE 279 THR 280 SER 281 SER 282 ALA 283 LEU 284 VAL 285 ALA 286 TYR 287 ALA 288 ARG 289 ALA 290 ALA 291 TYR 292 ARG 293 LEU 294 SER 295 GLN 296 ASN 297 GLY 298 ASP 299 LYS 300 GLY 301 ALA 302 LYS 303 THR 304 VAL 305 PHE 306 ASP 307 ILE 308 PRO 309 PHE 310 GLY 311 LEU 312 LEU 313 SER 314 PRO 315 LYS 316 SER 317 PRO 318 GLU 319 ASP 320 LEU 321 ARG 322 LYS 323 GLU 324 LEU 325 LEU 326

Ligands

Unit 3	NAP 1001 EDO 1002 EDO 1003 EDO 1004
Unit 4	NAP 1001 EDO 1002