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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A COMPLEX BETWEEN BACILLUS SUBTILIS FLA ZEBRAFISH TOLL-LIKE RECEPTOR 5
Keywords BACTERIAL PROTEIN IMMUNE RECEPTOR, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5GY2     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TLR5B PROTEIN,VARIABLE LYMPHOCYTE RECEPTOR BFLAGELLIN  A 442 3496 0
2  Protein   TLR5B PROTEIN,VARIABLE LYMPHOCYTE RECEPTOR BFLAGELLIN  C 169 1228 0
3  Protein   TLR5B PROTEIN,VARIABLE LYMPHOCYTE RECEPTOR BFLAGELLIN  B 441 3468 0
4  Protein   TLR5B PROTEIN,VARIABLE LYMPHOCYTE RECEPTOR BFLAGELLIN  D 169 1237 0
5  Ligand    E 2 0 28
6  Ligand    F 2 0 28
7  Ligand   TLR5B PROTEIN,VARIABLE LYMPHOCYTE RECEPTOR BFLAGELLIN  A 4 0 55
8  Ligand   TLR5B PROTEIN,VARIABLE LYMPHOCYTE RECEPTOR BFLAGELLIN  B 4 0 55
9 Water     465 0 465
total       1698 9429 631
Proteins
Unit 1 SER23 GLU24 CYS25 SER26 VAL27 ILE28 GLY29 TYR30 ASN31 ALA32 ILE33 CYS34 ILE35 ASN36 ARG37 GLY38 LEU39 HIS40 GLN41 VAL42 PRO43 GLU44 LEU45 PRO46 ALA47 HIS48 VAL49 ASN50 TYR51 VAL52 ASP53 LEU54 SER55 LEU56 ASN57 SER58 ILE59 ALA60 GLU61 LEU62 ASN63 GLU64 THR65 SER66 PHE67 SER68 ARG69 LEU70 GLN71 ASP72 LEU73 GLN74 PHE75 LEU76 LYS77 VAL78 GLU79 GLN80 GLN81 THR82 PRO83 GLY84 LEU85 VAL86 ILE87 ARG88 ASN89 ASN90 THR91 PHE92 ARG93 GLY94 LEU95 SER96 SER97 LEU98 ILE99 ILE100 LEU101 LYS102 LEU103 ASP104 TYR105 ASN106 GLN107 PHE108 LEU109 GLN110 LEU111 GLU112 THR113 GLY114 ALA115 PHE116 ASN117 GLY118 LEU119 ALA120 ASN121 LEU122 GLU123 VAL124 LEU125 THR126 LEU127 THR128 GLN129 CYS130 ASN131 LEU132 ASP133 GLY134 ALA135 VAL136 LEU137 SER138 GLY139 ASN140 PHE141 PHE142 LYS143 PRO144 LEU145 THR146 SER147 LEU148 GLU149 MET150 LEU151 VAL152 LEU153 ARG154 ASP155 ASN156 ASN157 ILE158 LYS159 LYS160 ILE161 GLN162 PRO163 ALA164 SER165 PHE166 PHE167 LEU168 ASN169 MET170 ARG171 ARG172 PHE173 HIS174 VAL175 LEU176 ASP177 LEU178 THR179 PHE180 ASN181 LYS182 VAL183 LYS184 SER185 ILE186 CYS187 GLU188 GLU189 ASP190 LEU191 LEU192 ASN193 PHE194 GLN195 GLY196 LYS197 HIS198 PHE199 THR200 LEU201 LEU202 ARG203 LEU204 SER205 SER206 ILE207 THR208 LEU209 GLN210 ASP211 MET212 ASN213 GLU214 TYR215 TRP216 LEU217 GLY218 TRP219 GLU220 LYS221 CYS222 GLY223 ASN224 PRO225 PHE226 LYS227 ASN228 THR229 SER230 ILE231 THR232 THR233 LEU234 ASP235 LEU236 SER237 GLY238 ASN239 GLY240 PHE241 LYS242 GLU243 SER244 MET245 ALA246 LYS247 ARG248 PHE249 PHE250 ASP251 ALA252 ILE253 ALA254 GLY255 THR256 LYS257 ILE258 GLN259 SER260 LEU261 ILE262 LEU263 SER264 ASN265 SER266 TYR267 ASN268 MET269 GLY270 SER271 SER272 PHE273 GLY274 HIS275 THR276 ASN277 PHE278 LYS279 ASP280 PRO281 ASP282 ASN283 PHE284 THR285 PHE286 LYS287 GLY288 LEU289 GLU290 ALA291 SER292 GLY293 VAL294 LYS295 THR296 CYS297 ASP298 LEU299 SER300 LYS301 SER302 LYS303 ILE304 PHE305 ALA306 LEU307 LEU308 LYS309 SER310 VAL311 PHE312 SER313 HIS314 PHE315 THR316 ASP317 LEU318 GLU319 GLN320 LEU321 THR322 LEU323 ALA324 GLN325 ASN326 GLU327 ILE328 ASN329 LYS330 ILE331 ASP332 ASP333 ASN334 ALA335 PHE336 TRP337 GLY338 LEU339 THR340 HIS341 LEU342 LEU343 LYS344 LEU345 ASN346 LEU347 SER348 GLN349 ASN350 PHE351 LEU352 GLY353 SER354 ILE355 ASP356 SER357 ARG358 MET359 PHE360 GLU361 ASN362 LEU363 ASP364 LYS365 LEU366 GLU367 VAL368 LEU369 ASP370 LEU371 SER372 TYR373 ASN374 HIS375 ILE376 ARG377 ALA378 LEU379 GLY380 ASP381 GLN382 SER383 PHE384 LEU385 GLY386 LEU387 PRO388 ASN389 LEU390 LYS391 GLU392 LEU393 ALA394 LEU395 ASP396 THR397 ASN398 GLN399 LEU400 LYS401 SER402 VAL403 PRO404 ASP405 GLY406 ILE407 PHE408 ASP409 ARG410 LEU411 THR412 SER413 LEU414 GLN415 LYS416 ILE417 TRP418 LEU419 HIS420 THR421 ASN422 PRO423 TRP424 ASP425 CYS426 SER427 CYS428 PRO429 ARG430 ILE431 ASP432 TYR433 LEU434 SER435 ARG436 TRP437 LEU438 ASN439 LYS440 ASN441 SER442 GLN443 LYS444 GLU445 GLN446 GLY447 SER448 ALA449 LYS450 CYS451 SER452 GLY453 SER454 GLY455 LYS456 PRO457 VAL458 ARG459 SER460 ILE461 ILE462 CYS463 PRO464
Unit 2 GLY54 GLN55 ILE56 ARG57 GLY58 LEU59 GLU60 MET61 ALA62 SER63 LYS64 ASN65 SER66 GLN67 ASP68 GLY69 ILE70 SER71 LEU72 ILE73 GLN74 THR75 ALA76 GLU77 GLY78 ALA79 LEU80 THR81 GLU82 THR83 HIS84 ALA85 ILE86 LEU87 GLN88 ARG89 MET90 ARG91 GLU92 LEU93 THR94 VAL95 GLN96 ALA97 GLY98 ASN99 THR100 GLY101 THR102 GLN103 GLN104 ALA105 GLU106 ASP107 LEU108 GLY109 ALA110 ILE111 LYS112 ASP113 GLU114 MET115 ASP116 ALA117 LEU118 ILE119 GLU120 GLU121 ILE122 ASP123 GLY124 ILE125 SER126 ASN127 ARG128 THR129 GLU130 PHE131 ASN132 GLY133 LYS134 LYS135 LEU136 LEU137 ASP138 GLY139 THR140 ASN141 SER142 THR143 ASP144 GLY145 PHE146 THR147 PHE148 GLN149 ILE150 GLY151 ALA152 ASN153 ALA154 GLY155 GLN156 GLN157 LEU158 ASN159 VAL160 LYS161 ILE162 ASP163 SER164 MET165 SER166 SER167 THR168 ALA169 LEU170 GLY171 VAL172 ASN173 ALA174 LEU175 ASP176 VAL177 THR178 ASP179 PHE180 ALA181 ALA182 THR183 ALA184 PHE185 ASP186 ASP187 GLN188 LEU189 LYS190 SER191 ILE192 ASP193 THR194 ALA195 ILE196 ASN197 THR198 VAL199 SER200 THR201 GLN202 ARG203 ALA204 LYS205 LEU206 GLY207 ALA208 VAL209 GLN210 ASN211 ARG212 LEU213 GLU214 HIS215 THR216 ILE217 ASN218 ASN219 LEU220 GLY221 ALA222
Unit 3 GLU24 CYS25 SER26 VAL27 ILE28 GLY29 TYR30 ASN31 ALA32 ILE33 CYS34 ILE35 ASN36 ARG37 GLY38 LEU39 HIS40 GLN41 VAL42 PRO43 GLU44 LEU45 PRO46 ALA47 HIS48 VAL49 ASN50 TYR51 VAL52 ASP53 LEU54 SER55 LEU56 ASN57 SER58 ILE59 ALA60 GLU61 LEU62 ASN63 GLU64 THR65 SER66 PHE67 SER68 ARG69 LEU70 GLN71 ASP72 LEU73 GLN74 PHE75 LEU76 LYS77 VAL78 GLU79 GLN80 GLN81 THR82 PRO83 GLY84 LEU85 VAL86 ILE87 ARG88 ASN89 ASN90 THR91 PHE92 ARG93 GLY94 LEU95 SER96 SER97 LEU98 ILE99 ILE100 LEU101 LYS102 LEU103 ASP104 TYR105 ASN106 GLN107 PHE108 LEU109 GLN110 LEU111 GLU112 THR113 GLY114 ALA115 PHE116 ASN117 GLY118 LEU119 ALA120 ASN121 LEU122 GLU123 VAL124 LEU125 THR126 LEU127 THR128 GLN129 CYS130 ASN131 LEU132 ASP133 GLY134 ALA135 VAL136 LEU137 SER138 GLY139 ASN140 PHE141 PHE142 LYS143 PRO144 LEU145 THR146 SER147 LEU148 GLU149 MET150 LEU151 VAL152 LEU153 ARG154 ASP155 ASN156 ASN157 ILE158 LYS159 LYS160 ILE161 GLN162 PRO163 ALA164 SER165 PHE166 PHE167 LEU168 ASN169 MET170 ARG171 ARG172 PHE173 HIS174 VAL175 LEU176 ASP177 LEU178 THR179 PHE180 ASN181 LYS182 VAL183 LYS184 SER185 ILE186 CYS187 GLU188 GLU189 ASP190 LEU191 LEU192 ASN193 PHE194 GLN195 GLY196 LYS197 HIS198 PHE199 THR200 LEU201 LEU202 ARG203 LEU204 SER205 SER206 ILE207 THR208 LEU209 GLN210 ASP211 MET212 ASN213 GLU214 TYR215 TRP216 LEU217 GLY218 TRP219 GLU220 LYS221 CYS222 GLY223 ASN224 PRO225 PHE226 LYS227 ASN228 THR229 SER230 ILE231 THR232 THR233 LEU234 ASP235 LEU236 SER237 GLY238 ASN239 GLY240 PHE241 LYS242 GLU243 SER244 MET245 ALA246 LYS247 ARG248 PHE249 PHE250 ASP251 ALA252 ILE253 ALA254 GLY255 THR256 LYS257 ILE258 GLN259 SER260 LEU261 ILE262 LEU263 SER264 ASN265 SER266 TYR267 ASN268 MET269 GLY270 SER271 SER272 PHE273 GLY274 HIS275 THR276 ASN277 PHE278 LYS279 ASP280 PRO281 ASP282 ASN283 PHE284 THR285 PHE286 LYS287 GLY288 LEU289 GLU290 ALA291 SER292 GLY293 VAL294 LYS295 THR296 CYS297 ASP298 LEU299 SER300 LYS301 SER302 LYS303 ILE304 PHE305 ALA306 LEU307 LEU308 LYS309 SER310 VAL311 PHE312 SER313 HIS314 PHE315 THR316 ASP317 LEU318 GLU319 GLN320 LEU321 THR322 LEU323 ALA324 GLN325 ASN326 GLU327 ILE328 ASN329 LYS330 ILE331 ASP332 ASP333 ASN334 ALA335 PHE336 TRP337 GLY338 LEU339 THR340 HIS341 LEU342 LEU343 LYS344 LEU345 ASN346 LEU347 SER348 GLN349 ASN350 PHE351 LEU352 GLY353 SER354 ILE355 ASP356 SER357 ARG358 MET359 PHE360 GLU361 ASN362 LEU363 ASP364 LYS365 LEU366 GLU367 VAL368 LEU369 ASP370 LEU371 SER372 TYR373 ASN374 HIS375 ILE376 ARG377 ALA378 LEU379 GLY380 ASP381 GLN382 SER383 PHE384 LEU385 GLY386 LEU387 PRO388 ASN389 LEU390 LYS391 GLU392 LEU393 ALA394 LEU395 ASP396 THR397 ASN398 GLN399 LEU400 LYS401 SER402 VAL403 PRO404 ASP405 GLY406 ILE407 PHE408 ASP409 ARG410 LEU411 THR412 SER413 LEU414 GLN415 LYS416 ILE417 TRP418 LEU419 HIS420 THR421 ASN422 PRO423 TRP424 ASP425 CYS426 SER427 CYS428 PRO429 ARG430 ILE431 ASP432 TYR433 LEU434 SER435 ARG436 TRP437 LEU438 ASN439 LYS440 ASN441 SER442 GLN443 LYS444 GLU445 GLN446 GLY447 SER448 ALA449 LYS450 CYS451 SER452 GLY453 SER454 GLY455 LYS456 PRO457 VAL458 ARG459 SER460 ILE461 ILE462 CYS463 PRO464
Unit 4 GLY54 GLN55 ILE56 ARG57 GLY58 LEU59 GLU60 MET61 ALA62 SER63 LYS64 ASN65 SER66 GLN67 ASP68 GLY69 ILE70 SER71 LEU72 ILE73 GLN74 THR75 ALA76 GLU77 GLY78 ALA79 LEU80 THR81 GLU82 THR83 HIS84 ALA85 ILE86 LEU87 GLN88 ARG89 MET90 ARG91 GLU92 LEU93 THR94 VAL95 GLN96 ALA97 GLY98 ASN99 THR100 GLY101 THR102 GLN103 GLN104 ALA105 GLU106 ASP107 LEU108 GLY109 ALA110 ILE111 LYS112 ASP113 GLU114 MET115 ASP116 ALA117 LEU118 ILE119 GLU120 GLU121 ILE122 ASP123 GLY124 ILE125 SER126 ASN127 ARG128 THR129 GLU130 PHE131 ASN132 GLY133 LYS134 LYS135 LEU136 LEU137 ASP138 GLY139 THR140 ASN141 SER142 THR143 ASP144 GLY145 PHE146 THR147 PHE148 GLN149 ILE150 GLY151 ALA152 ASN153 ALA154 GLY155 GLN156 GLN157 LEU158 ASN159 VAL160 LYS161 ILE162 ASP163 SER164 MET165 SER166 SER167 THR168 ALA169 LEU170 GLY171 VAL172 ASN173 ALA174 LEU175 ASP176 VAL177 THR178 ASP179 PHE180 ALA181 ALA182 THR183 ALA184 PHE185 ASP186 ASP187 GLN188 LEU189 LYS190 SER191 ILE192 ASP193 THR194 ALA195 ILE196 ASN197 THR198 VAL199 SER200 THR201 GLN202 ARG203 ALA204 LYS205 LEU206 GLY207 ALA208 VAL209 GLN210 ASN211 ARG212 LEU213 GLU214 HIS215 THR216 ILE217 ASN218 ASN219 LEU220 GLY221 ALA222
Ligands
Unit 5 NAG1 NAG2
Unit 6 NAG1 NAG2
Unit 7 NAG801 NAG802 NAG803 PG4806
Unit 8 NAG801 NAG802 NAG803 PG4806
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany