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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF SILKWORM PIWI-CLADE ARGONAUTE SIWI BOUN
Keywords NUCLEASE, RNASEH, HYDROLASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5GUH     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PIWI  A 759 5828 0
2  RNA    B 8 143 21
3  Ligand   PIWI  A 2 0 2
4 Water     84 0 84
total       853 5971 107

Proteins
Unit 1 ILE130 SER131 ILE132 LEU133 ARG134 THR135 ARG136 PRO137 GLU138 ALA139 VAL140 THR141 SER142 LYS143 LYS144 GLY145 THR146 SER147 GLY148 THR149 PRO150 LEU151 ASP152 LEU153 LEU154 ALA155 ASN156 TYR157 PHE158 THR159 VAL160 GLU161 THR162 THR163 PRO164 LYS165 TRP166 GLY167 LEU168 TYR169 GLN170 TYR171 HIS172 VAL173 ASP174 ILE175 SER176 PRO177 GLU178 GLU179 ASP180 SER181 THR182 GLY183 VAL184 ARG185 LYS186 ALA187 LEU188 MET189 ARG190 VAL191 HIS192 SER193 LYS194 THR195 LEU196 GLY197 GLY198 TYR199 LEU200 PHE201 ASP202 GLY203 THR204 VAL205 LEU206 TYR207 THR208 VAL209 ASN210 ARG211 LEU212 HIS213 PRO214 ASP215 PRO216 MET217 GLU218 LEU219 TYR220 SER221 ASP222 ARG223 LYS224 THR225 ASP226 ASN227 GLU228 ARG229 MET230 ARG231 ILE232 LEU233 ILE234 LYS235 LEU236 THR237 CYS238 GLU239 VAL240 SER241 PRO242 GLY243 ASP244 TYR245 HIS246 TYR247 ILE248 GLN249 ILE250 PHE251 ASN252 ILE253 ILE254 ILE255 ARG256 LYS257 CYS258 PHE259 ASN260 LEU261 LEU262 LYS263 LEU264 GLN265 LEU266 MET267 GLY268 ARG269 ASP270 TYR271 PHE272 ASP273 PRO274 GLU275 ALA276 LYS277 ILE278 ASP279 ILE280 PRO281 GLU282 PHE283 LYS284 LEU285 GLN286 ILE287 TRP288 PRO289 GLY290 TYR291 LYS292 THR293 THR294 ILE295 ASN296 GLN297 TYR298 GLU299 ASP300 ARG301 LEU302 LEU303 LEU304 VAL305 THR306 GLU307 ILE308 ALA309 HIS310 LYS311 VAL312 LEU313 ARG314 MET315 ASP316 THR317 VAL318 LEU319 GLN320 MET321 LEU322 SER323 GLU324 TYR325 ALA326 ALA327 THR328 LYS329 LYS335 ILE336 PHE337 LEU338 GLU339 ASP340 VAL341 VAL342 GLY343 LYS344 ILE345 VAL346 MET347 THR348 ASP349 TYR350 ASN351 LYS352 ARG353 THR354 TYR355 ARG356 VAL357 ASP358 ASP359 VAL360 ALA361 ASN363 VAL364 SER365 PRO366 LYS367 SER368 THR369 PHE370 LYS371 MET372 ARG373 ASP374 GLU375 ASN376 ILE377 THR378 TYR379 ILE380 GLU381 TYR382 TYR383 TYR384 LYS385 LYS386 TYR387 ASN388 LEU389 ARG390 ILE391 GLN392 ASP393 PRO394 GLY395 GLN396 PRO397 LEU398 LEU399 ILE400 SER401 ARG402 SER403 LYS404 PRO405 ARG406 GLU407 ILE408 ARG409 ALA410 GLY411 LEU412 PRO413 GLU414 LEU415 ILE416 TYR417 LEU418 VAL419 PRO420 GLU421 LEU422 CYS423 ARG424 GLN425 THR426 GLY427 LEU428 SER429 ASP430 GLU431 MET432 ARG433 ALA434 ASN435 PHE436 LYS437 LEU438 MET439 ARG440 SER441 LEU442 ASP443 VAL444 HIS445 THR446 LYS447 ILE448 GLY449 PRO450 ASP451 LYS452 ARG453 ILE454 GLU455 LYS456 LEU457 ASN458 ASN459 PHE460 ASN461 ARG462 ARG463 PHE464 THR465 SER466 THR467 PRO468 GLU469 VAL470 VAL471 GLU472 GLU473 LEU474 ALA475 THR476 TRP477 SER478 LEU479 LYS480 LEU481 SER482 LYS483 GLU484 LEU485 VAL486 LYS487 ILE488 LYS489 GLY490 ARG491 GLN492 LEU493 PRO494 PRO495 GLU496 ASN497 ILE498 ILE499 GLN500 ALA501 ASN502 ASN503 VAL504 LYS505 TYR506 PRO507 ALA508 GLY509 ASP510 THR511 THR512 GLU513 GLY514 TRP515 THR516 ARG517 ASP518 MET519 ARG520 SER521 LYS522 HIS523 LEU524 LEU525 ALA526 ILE527 ALA528 GLN529 LEU530 ASN531 SER532 TRP533 VAL534 VAL535 ILE536 THR537 PRO538 GLU539 ARG540 GLN541 ARG542 ARG543 ASP544 THR545 GLU546 SER547 PHE548 ILE549 ASP550 LEU551 ILE552 ILE553 LYS554 THR555 GLY556 GLY557 GLY558 VAL559 GLY560 PHE561 ARG562 MET563 ARG564 SER565 PRO566 ASP567 LEU568 VAL569 VAL570 ILE571 ARG572 HIS573 ASP574 GLY575 PRO576 ILE577 GLU578 TYR579 ALA580 ASN581 MET582 CYS583 GLU584 GLU585 VAL586 ILE587 ALA588 ARG589 LYS590 ASN591 PRO592 ALA593 LEU594 ILE595 LEU596 CYS597 VAL598 LEU599 ALA600 ARG601 ASN602 TYR603 ALA604 ASP605 ARG606 TYR607 GLU608 ALA609 ILE610 LYS611 LYS612 LYS613 CYS614 THR615 VAL616 ASP617 ARG618 ALA619 VAL620 PRO621 THR622 GLN623 VAL624 VAL625 CYS626 ALA627 ARG628 ASN629 MET630 SER631 SER632 LYS633 SER634 ALA635 MET636 SER637 ILE638 ALA639 THR640 LYS641 VAL642 ALA643 ILE644 GLN645 ILE646 ASN647 CYS648 LYS649 LEU650 GLY651 GLY652 SER653 PRO654 TRP655 THR656 VAL657 ASP658 ILE659 PRO660 LEU661 PRO662 SER663 LEU664 MET665 VAL666 VAL667 GLY668 TYR669 ASP670 VAL671 CYS672 HIS673 ASP674 THR675 ARG676 SER677 LYS678 GLU679 LYS680 SER681 PHE682 GLY683 ALA684 PHE685 VAL686 ALA687 THR688 LEU689 ASP690 LYS691 GLN692 MET693 THR694 GLN695 TYR696 TYR697 SER698 ILE699 VAL700 ASN701 ALA702 HIS703 LEU709 SER710 SER711 HIS712 MET713 GLY714 PHE715 ASN716 ILE717 ALA718 SER719 ALA720 VAL721 LYS722 LYS723 PHE724 ARG725 GLU726 LYS727 ASN728 GLY729 THR730 TYR731 PRO732 ALA733 ARG734 ILE735 PHE736 ILE737 TYR738 ARG739 ASP740 GLY741 VAL742 GLY743 ASP744 GLY745 GLN746 ILE747 PRO748 TYR749 VAL750 HIS751 SER752 HIS753 GLU754 VAL755 ALA756 GLU757 ILE758 LYS759 LYS760 LYS761 LEU762 ALA763 GLU764 ILE765 TYR766 ALA767 GLY768 VAL769 GLU770 ILE771 LYS772 LEU773 ALA774 PHE775 ILE776 ILE777 VAL778 SER779 LYS780 ARG781 ILE782 ASN783 THR784 ARG785 ILE786 PHE787 VAL788 GLN789 ARG790 GLY791 ARG792 SER793 GLY794 GLU795 ASN796 PRO797 ARG798 PRO799 GLY800 THR801 VAL802 ILE803 ASP804 ASP805 VAL806 VAL807 THR808 LEU809 PRO810 GLU811 ARG812 TYR813 ASP814 PHE815 TYR816 LEU817 VAL818 SER819 GLN820 ASN821 VAL822 ARG823 GLU824 GLY825 THR826 ILE827 ALA828 PRO829 THR830 SER831 TYR832 ASN833 VAL834 ILE835 GLU836 ASP837 THR838 THR839 GLY840 LEU841 ASN842 PRO843 ASP844 ARG845 ILE846 GLN847 ARG848 LEU849 THR850 TYR851 LYS852 LEU853 THR854 HIS855 LEU856 TYR857 PHE858 ASN859 CYS860 SER861 SER862 GLN863 VAL864 ARG865 VAL866 PRO867 SER868 VAL869 CYS870 GLN871 TYR872 ALA873 HIS874 LYS875 LEU876 ALA877 PHE878 LEU879 ALA880 ALA881 ASN882 SER883 LEU884 HIS885 ASN886 GLN887 PRO888 HIS889 TYR890 SER891 LEU892 ASN893 GLU894 THR895 LEU896 TYR897 PHE898 LEU899

Nucleic acids
Unit 2 U1 A2 U3 U4 U5 U26 U27 OMU28

Ligands
Unit 3 MG901 MG902

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany