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Sequence, Chains, Asymmetric and Biological Units

Title HEPATITIS B VIRUS CORE PROTEIN Y132A MUTANT IN COMPLEX WITH HETEROARYLDIHYDROPYRIMIDINE
Keywords HBV, CAPID ASSEMBLY, HAP, CORE PROTEIN, VIRAL PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5GMZ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CORE PROTEIN  A 143 1133 0
2  Protein   CORE PROTEIN  B 148 1179 0
3  Protein   CORE PROTEIN  C 143 1133 0
4  Protein   CORE PROTEIN  D 150 1194 0
5  Protein   CORE PROTEIN  E 143 1133 0
6  Protein   CORE PROTEIN  F 150 1195 0
7  Ligand   CORE PROTEIN  A 6 0 84
8  Ligand   CORE PROTEIN  B 2 0 40
9  Ligand   CORE PROTEIN  C 2 0 38
10  Ligand   CORE PROTEIN  D 4 0 43
11  Ligand   CORE PROTEIN  E 5 0 50
12  Ligand   CORE PROTEIN  F 2 0 40
13 Water     744 0 744
total       1642 6967 1039
Proteins
Unit 1 MET1 ASP2 ILE3 ASP4 PRO5 TYR6 LYS7 GLU8 PHE9 GLY10 ALA11 THR12 VAL13 GLU14 LEU15 LEU16 SER17 PHE18 LEU19 PRO20 SER21 ASP22 PHE23 PHE24 PRO25 SER26 VAL27 ARG28 ASP29 LEU30 LEU31 ASP32 THR33 ALA34 ALA35 ALA36 LEU37 TYR38 ARG39 ASP40 ALA41 LEU42 GLU43 SER44 PRO45 GLU46 HIS47 CYS48 SER49 PRO50 HIS51 HIS52 THR53 ALA54 LEU55 ARG56 GLN57 ALA58 ILE59 LEU60 CYS61 TRP62 GLY63 ASP64 LEU65 MET66 THR67 LEU68 ALA69 THR70 TRP71 VAL72 GLY73 THR74 ASN75 LEU76 GLU77 ASP78 PRO79 ALA80 SER81 ARG82 ASP83 LEU84 VAL85 VAL86 SER87 TYR88 VAL89 ASN90 THR91 ASN92 VAL93 GLY94 LEU95 LYS96 PHE97 ARG98 GLN99 LEU100 LEU101 TRP102 PHE103 HIS104 ILE105 SER106 CYS107 LEU108 THR109 PHE110 GLY111 ARG112 GLU113 THR114 VAL115 LEU116 GLU117 TYR118 LEU119 VAL120 SER121 PHE122 GLY123 VAL124 TRP125 ILE126 ARG127 THR128 PRO129 PRO130 ALA131 ALA132 ARG133 PRO134 PRO135 ASN136 ALA137 PRO138 ILE139 LEU140 SER141 THR142 LEU143
Unit 2 MET1 ASP2 ILE3 ASP4 PRO5 TYR6 LYS7 GLU8 PHE9 GLY10 ALA11 THR12 VAL13 GLU14 LEU15 LEU16 SER17 PHE18 LEU19 PRO20 SER21 ASP22 PHE23 PHE24 PRO25 SER26 VAL27 ARG28 ASP29 LEU30 LEU31 ASP32 THR33 ALA34 ALA35 ALA36 LEU37 TYR38 ARG39 ASP40 ALA41 LEU42 GLU43 SER44 PRO45 GLU46 HIS47 CYS48 SER49 PRO50 HIS51 HIS52 THR53 ALA54 LEU55 ARG56 GLN57 ALA58 ILE59 LEU60 CYS61 TRP62 GLY63 ASP64 LEU65 MET66 THR67 LEU68 ALA69 THR70 TRP71 VAL72 GLY73 THR74 ASN75 LEU76 GLU77 ASP78 PRO79 ALA80 SER81 ARG82 ASP83 LEU84 VAL85 VAL86 SER87 TYR88 VAL89 ASN90 THR91 ASN92 VAL93 GLY94 LEU95 LYS96 PHE97 ARG98 GLN99 LEU100 LEU101 TRP102 PHE103 HIS104 ILE105 SER106 CYS107 LEU108 THR109 PHE110 GLY111 ARG112 GLU113 THR114 VAL115 LEU116 GLU117 TYR118 LEU119 VAL120 SER121 PHE122 GLY123 VAL124 TRP125 ILE126 ARG127 THR128 PRO129 PRO130 ALA131 ALA132 ARG133 PRO134 PRO135 ASN136 ALA137 PRO138 ILE139 LEU140 SER141 THR142 GLU150 ASN151 LEU152 TYR153 PHE154 GLN155
Unit 3 MET1 ASP2 ILE3 ASP4 PRO5 TYR6 LYS7 GLU8 PHE9 GLY10 ALA11 THR12 VAL13 GLU14 LEU15 LEU16 SER17 PHE18 LEU19 PRO20 SER21 ASP22 PHE23 PHE24 PRO25 SER26 VAL27 ARG28 ASP29 LEU30 LEU31 ASP32 THR33 ALA34 ALA35 ALA36 LEU37 TYR38 ARG39 ASP40 ALA41 LEU42 GLU43 SER44 PRO45 GLU46 HIS47 CYS48 SER49 PRO50 HIS51 HIS52 THR53 ALA54 LEU55 ARG56 GLN57 ALA58 ILE59 LEU60 CYS61 TRP62 GLY63 ASP64 LEU65 MET66 THR67 LEU68 ALA69 THR70 TRP71 VAL72 GLY73 THR74 ASN75 LEU76 GLU77 ASP78 PRO79 ALA80 SER81 ARG82 ASP83 LEU84 VAL85 VAL86 SER87 TYR88 VAL89 ASN90 THR91 ASN92 VAL93 GLY94 LEU95 LYS96 PHE97 ARG98 GLN99 LEU100 LEU101 TRP102 PHE103 HIS104 ILE105 SER106 CYS107 LEU108 THR109 PHE110 GLY111 ARG112 GLU113 THR114 VAL115 LEU116 GLU117 TYR118 LEU119 VAL120 SER121 PHE122 GLY123 VAL124 TRP125 ILE126 ARG127 THR128 PRO129 PRO130 ALA131 ALA132 ARG133 PRO134 PRO135 ASN136 ALA137 PRO138 ILE139 LEU140 SER141 THR142 LEU143
Unit 4 MET1 ASP2 ILE3 ASP4 PRO5 TYR6 LYS7 GLU8 PHE9 GLY10 ALA11 THR12 VAL13 GLU14 LEU15 LEU16 SER17 PHE18 LEU19 PRO20 SER21 ASP22 PHE23 PHE24 PRO25 SER26 VAL27 ARG28 ASP29 LEU30 LEU31 ASP32 THR33 ALA34 ALA35 ALA36 LEU37 TYR38 ARG39 ASP40 ALA41 LEU42 GLU43 SER44 PRO45 GLU46 HIS47 CYS48 SER49 PRO50 HIS51 HIS52 THR53 ALA54 LEU55 ARG56 GLN57 ALA58 ILE59 LEU60 CYS61 TRP62 GLY63 ASP64 LEU65 MET66 THR67 LEU68 ALA69 THR70 TRP71 VAL72 GLY73 THR74 ASN75 LEU76 GLU77 ASP78 PRO79 ALA80 SER81 ARG82 ASP83 LEU84 VAL85 VAL86 SER87 TYR88 VAL89 ASN90 THR91 ASN92 VAL93 GLY94 LEU95 LYS96 PHE97 ARG98 GLN99 LEU100 LEU101 TRP102 PHE103 HIS104 ILE105 SER106 CYS107 LEU108 THR109 PHE110 GLY111 ARG112 GLU113 THR114 VAL115 LEU116 GLU117 TYR118 LEU119 VAL120 SER121 PHE122 GLY123 VAL124 TRP125 ILE126 ARG127 THR128 PRO129 PRO130 ALA131 ALA132 ARG133 PRO134 PRO135 ASN136 ALA137 PRO138 ILE139 LEU140 SER141 THR142 LEU143 PRO144 GLU150 ASN151 LEU152 TYR153 PHE154 GLN155
Unit 5 MET1 ASP2 ILE3 ASP4 PRO5 TYR6 LYS7 GLU8 PHE9 GLY10 ALA11 THR12 VAL13 GLU14 LEU15 LEU16 SER17 PHE18 LEU19 PRO20 SER21 ASP22 PHE23 PHE24 PRO25 SER26 VAL27 ARG28 ASP29 LEU30 LEU31 ASP32 THR33 ALA34 ALA35 ALA36 LEU37 TYR38 ARG39 ASP40 ALA41 LEU42 GLU43 SER44 PRO45 GLU46 HIS47 CYS48 SER49 PRO50 HIS51 HIS52 THR53 ALA54 LEU55 ARG56 GLN57 ALA58 ILE59 LEU60 CYS61 TRP62 GLY63 ASP64 LEU65 MET66 THR67 LEU68 ALA69 THR70 TRP71 VAL72 GLY73 THR74 ASN75 LEU76 GLU77 ASP78 PRO79 ALA80 SER81 ARG82 ASP83 LEU84 VAL85 VAL86 SER87 TYR88 VAL89 ASN90 THR91 ASN92 VAL93 GLY94 LEU95 LYS96 PHE97 ARG98 GLN99 LEU100 LEU101 TRP102 PHE103 HIS104 ILE105 SER106 CYS107 LEU108 THR109 PHE110 GLY111 ARG112 GLU113 THR114 VAL115 LEU116 GLU117 TYR118 LEU119 VAL120 SER121 PHE122 GLY123 VAL124 TRP125 ILE126 ARG127 THR128 PRO129 PRO130 ALA131 ALA132 ARG133 PRO134 PRO135 ASN136 ALA137 PRO138 ILE139 LEU140 SER141 THR142 LEU143
Unit 6 MET1 ASP2 ILE3 ASP4 PRO5 TYR6 LYS7 GLU8 PHE9 GLY10 ALA11 THR12 VAL13 GLU14 LEU15 LEU16 SER17 PHE18 LEU19 PRO20 SER21 ASP22 PHE23 PHE24 PRO25 SER26 VAL27 ARG28 ASP29 LEU30 LEU31 ASP32 THR33 ALA34 ALA35 ALA36 LEU37 TYR38 ARG39 ASP40 ALA41 LEU42 GLU43 SER44 PRO45 GLU46 HIS47 CYS48 SER49 PRO50 HIS51 HIS52 THR53 ALA54 LEU55 ARG56 GLN57 ALA58 ILE59 LEU60 CYS61 TRP62 GLY63 ASP64 LEU65 MET66 THR67 LEU68 ALA69 THR70 TRP71 VAL72 GLY73 THR74 ASN75 LEU76 GLU77 ASP78 PRO79 ALA80 SER81 ARG82 ASP83 LEU84 VAL85 VAL86 SER87 TYR88 VAL89 ASN90 THR91 ASN92 VAL93 GLY94 LEU95 LYS96 PHE97 ARG98 GLN99 LEU100 LEU101 TRP102 PHE103 HIS104 ILE105 SER106 CYS107 LEU108 THR109 PHE110 GLY111 ARG112 GLU113 THR114 VAL115 LEU116 GLU117 TYR118 LEU119 VAL120 SER121 PHE122 GLY123 VAL124 TRP125 ILE126 ARG127 THR128 PRO129 PRO130 ALA131 ALA132 ARG133 PRO134 PRO135 ASN136 ALA137 PRO138 ILE139 LEU140 SER141 THR142 LEU143 VAL149 GLU150 ASN151 LEU152 TYR153 PHE154 GLN155
Ligands
Unit 7 IPA201 IPA202 IPA203 IPA204 6XU205 6XU206
Unit 8 GOL201 6XU202
Unit 9 IPA201 6XU202
Unit 10 IPA201 IPA202 CL203 6XU204
Unit 11 IPA201 IPA202 IPA203 IPA204 6XU205
Unit 12 GOL201 6XU202
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany