5GKR - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF SLE PATIENT-DERIVED ANTI-DNA ANTIBODY I WITH OLIGONUCLEOTIDE
• Keywords: ANTIBODY, LUPUS, DNA, FAB, IMMUNE SYSTEM-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5GKR	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	IGG2, FAB (HEAVY CHAIN)	A	207	1569	0
2	Protein	LAMBDA, FAB (LIGHT CHAIN)	B	213	1590	0
3	Protein	IGG2, FAB (HEAVY CHAIN)	C	202	1542	0
4	Protein	LAMBDA, FAB (LIGHT CHAIN)	D	206	1538	0
5	Other macromolecule	DNA (5'-D(P*TP*TP*TP*T)-3')	T	4	64	0
6	Water			156	0	156
total				988	6303	156

Proteins

Unit 1	VAL 2 GLN 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 PRO 9 GLY 10 LEU 11 VAL 12 LYS 13 SER 14 SER 15 GLU 16 THR 17 LEU 18 SER 19 LEU 20 THR 21 CYS 22 THR 23 VAL 24 SER 25 GLY 26 GLY 27 SER 28 ILE 29 SER 30 SER 31 TYR 32 PHE 33 TRP 34 SER 35 TRP 36 ILE 37 ARG 38 GLN 39 PRO 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 ILE 48 GLY 49 TYR 50 ILE 51 TYR 52 TYR 53 SER 54 GLY 55 SER 56 THR 57 ASN 58 TYR 59 ASN 60 PRO 61 SER 62 LEU 63 LYS 64 SER 65 ARG 66 VAL 67 THR 68 ILE 69 SER 70 LEU 71 HIS 72 THR 73 SER 74 LYS 75 ASN 76 GLN 77 PHE 78 SER 79 LEU 80 LYS 81 LEU 82 SER 82A SER 82B VAL 82C THR 83 ALA 84 ALA 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 ARG 94 HIS 95 ARG 96 ASN 97 TRP 98 LEU 99 PHE 100 ASP 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 GLY 134 THR 135 ALA 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 ALA 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 SER 188 LEU 189 GLY 190 THR 191 GLN 192 THR 193 TYR 194 THR 195 CYS 196 ASN 197 VAL 198 ASP 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 THR 210 VAL 211 GLU 212
Unit 2	GLN 1 SER 2 ALA 3 LEU 4 THR 5 GLN 6 PRO 7 ARG 8 SER 9 VAL 11 SER 12 GLY 13 SER 14 PRO 15 GLY 16 GLN 17 SER 18 VAL 19 THR 20 ILE 21 SER 22 CYS 23 THR 24 GLY 25 THR 26 SER 27 SER 28 ASP 29 VAL 30 GLY 30A GLY 30B TYR 30C ASN 31 TYR 32 VAL 33 SER 34 TRP 35 TYR 36 GLN 37 GLN 38 HIS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 VAL 46 MET 47 ILE 48 TYR 49 ASP 50 VAL 51 SER 52 LYS 53 ARG 54 PRO 55 SER 56 GLY 57 VAL 58 PRO 59 ASP 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 LYS 66 SER 67 GLY 68 ASN 69 THR 70 ALA 71 SER 72 LEU 73 THR 74 ILE 75 SER 76 GLY 77 LEU 78 GLN 79 ALA 80 GLU 81 ASP 82 GLU 83 ALA 84 ASP 85 TYR 86 TYR 87 CYS 88 CYS 89 SER 90 TYR 91 ALA 92 GLY 93 SER 94 TYR 95 THR 95A TYR 96 VAL 97 PHE 98 GLY 99 THR 100 GLY 101 THR 102 LYS 103 VAL 104 THR 105 VAL 106 LEU 107 GLY 108 GLN 109 PRO 110 LYS 111 ALA 112 ASN 113 PRO 114 THR 115 VAL 116 THR 117 LEU 118 PHE 119 PRO 120 PRO 121 SER 122 SER 123 GLU 124 GLU 125 LEU 126 GLN 127 ALA 128 ASN 129 LYS 130 ALA 131 THR 132 LEU 133 VAL 134 CYS 135 LEU 136 ILE 137 SER 138 ASP 139 PHE 140 TYR 141 PRO 142 GLY 143 ALA 144 VAL 145 THR 146 VAL 147 ALA 148 TRP 149 LYS 150 ALA 151 ASP 152 GLY 153 SER 154 PRO 155 VAL 156 LYS 157 ALA 158 GLY 159 VAL 160 GLU 161 THR 162 THR 163 LYS 164 PRO 165 SER 166 LYS 167 GLN 168 SER 169 ASN 170 ASN 171 LYS 172 TYR 173 ALA 174 ALA 175 SER 176 SER 177 TYR 178 LEU 179 SER 180 LEU 181 THR 182 PRO 183 GLU 184 GLN 185 TRP 186 LYS 187 SER 188 HIS 189 ARG 190 SER 191 TYR 192 SER 193 CYS 194 GLN 195 VAL 196 THR 197 HIS 198 GLU 199 GLY 200 SER 201 THR 202 VAL 203 GLU 204 LYS 205 THR 206 VAL 207 ALA 208 PRO 209 THR 210
Unit 3	VAL 2 GLN 3 LEU 4 GLN 5 GLU 6 SER 7 GLY 8 PRO 9 GLY 10 LEU 11 VAL 12 LYS 13 SER 14 SER 15 GLU 16 THR 17 LEU 18 SER 19 LEU 20 THR 21 CYS 22 THR 23 VAL 24 SER 25 GLY 26 GLY 27 SER 28 TYR 32 PHE 33 TRP 34 SER 35 TRP 36 ILE 37 ARG 38 GLN 39 PRO 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 ILE 48 GLY 49 TYR 50 ILE 51 TYR 52 TYR 53 SER 54 GLY 55 SER 56 THR 57 ASN 58 TYR 59 ASN 60 PRO 61 SER 62 LEU 63 LYS 64 SER 65 ARG 66 VAL 67 THR 68 ILE 69 SER 70 LEU 71 HIS 72 THR 73 SER 74 LYS 75 ASN 76 GLN 77 PHE 78 SER 79 LEU 80 LYS 81 LEU 82 SER 82A SER 82B VAL 82C THR 83 ALA 84 ALA 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 ARG 94 HIS 95 ARG 96 ASN 97 TRP 98 LEU 99 PHE 100 ASP 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 THR 135 ALA 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 ALA 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 GLY 190 THR 191 GLN 192 THR 193 TYR 194 THR 195 CYS 196 ASN 197 VAL 198 ASP 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 THR 210 VAL 211 GLU 212 ARG 213
Unit 4	ALA 3 LEU 4 THR 5 GLN 6 PRO 7 ARG 8 SER 9 VAL 11 SER 12 GLY 13 SER 14 PRO 15 GLY 16 GLN 17 SER 18 VAL 19 THR 20 ILE 21 SER 22 CYS 23 THR 24 GLY 25 THR 26 SER 27 SER 28 ASP 29 VAL 30 GLY 30A GLY 30B TYR 30C ASN 31 TYR 32 VAL 33 SER 34 TRP 35 TYR 36 GLN 37 GLN 38 HIS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 VAL 46 MET 47 ILE 48 TYR 49 ASP 50 VAL 51 SER 52 LYS 53 ARG 54 PRO 55 SER 56 GLY 57 VAL 58 PRO 59 ASP 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 LYS 66 SER 67 GLY 68 ASN 69 THR 70 ALA 71 SER 72 LEU 73 THR 74 ILE 75 SER 76 GLY 77 LEU 78 GLN 79 ALA 80 GLU 81 ASP 82 GLU 83 ALA 84 ASP 85 TYR 86 TYR 87 CYS 88 CYS 89 SER 90 TYR 91 ALA 92 GLY 93 SER 94 TYR 95 THR 95A TYR 96 VAL 97 PHE 98 GLY 99 THR 100 GLY 101 THR 102 LYS 103 VAL 104 THR 105 VAL 106 LEU 107 GLY 108 ASN 113 PRO 114 THR 115 VAL 116 THR 117 LEU 118 PHE 119 PRO 120 PRO 121 SER 122 SER 123 GLU 124 GLU 125 LEU 126 GLN 127 ALA 128 ASN 129 LYS 130 ALA 131 THR 132 LEU 133 VAL 134 CYS 135 LEU 136 ILE 137 SER 138 ASP 139 PHE 140 TYR 141 PRO 142 GLY 143 ALA 144 VAL 145 THR 146 VAL 147 ALA 148 TRP 149 LYS 150 ALA 151 ASP 152 GLY 153 SER 154 PRO 155 VAL 156 LYS 157 ALA 158 GLY 159 VAL 160 GLU 161 THR 162 THR 163 LYS 164 PRO 165 SER 166 LYS 167 GLN 168 SER 169 ASN 170 ASN 171 LYS 172 TYR 173 ALA 174 ALA 175 SER 176 SER 177 TYR 178 LEU 179 SER 180 LEU 181 THR 182 PRO 183 GLU 184 GLN 185 TRP 186 LYS 187 SER 188 HIS 189 ARG 190 SER 191 TYR 192 SER 193 CYS 194 GLN 195 VAL 196 THR 197 HIS 198 GLU 199 GLY 200 SER 201 THR 202 VAL 203 GLU 204 LYS 205 THR 206 VAL 207 ALA 208 PRO 209

Other macromolecules

Unit 5

DT 1 DT 2 DT 3 DT 4