5GKP - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE ENDOG WORM HOMOLOGUE CPS-6 H148A/F1 COMPLEX WITH DNA
• Keywords: ENDOG, MITOCHONDRIA, ENDONUCLEASE, NON-SPECIFIC NUCLEASE, PR INTERACTIONS, HYDROLASE-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5GKP	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ENDONUCLEASE G, MITOCHONDRIAL	A	235	3701	0
2	Protein	ENDONUCLEASE G, MITOCHONDRIAL	B	239	3788	0
3	Other macromolecule	DNA (5'-D(*TP*TP*TP*TP*T)-3')	C	5	145	0
4	Other macromolecule	DNA (5'-D(*TP*TP*TP*TP*T)-3')	D	5	144	0
5	Ligand	ENDONUCLEASE G, MITOCHONDRIAL	A	1	0	1
6	Ligand	ENDONUCLEASE G, MITOCHONDRIAL	B	1	0	1
7	Water			174	0	175
total				660	7778	177

Proteins

Unit 1

SER 64 ARG 65 SER 66 ALA 67 GLU 68 ILE 69 MET 70 LYS 71 HIS 72 GLY 73 TYR 74 PRO 75 GLY 76 PHE 77 THR 78 ASN 79 VAL 80 ARG 81 THR 82 TYR 83 GLU 84 ASP 85 PHE 86 VAL 87 LEU 88 SER 89 TYR 90 ASP 91 TYR 92 LYS 93 THR 94 ARG 95 THR 96 ALA 97 HIS 98 TRP 99 VAL 100 CYS 101 GLU 102 HIS 103 LEU 104 THR 105 PRO 106 GLU 107 ARG 108 LEU 109 LYS 110 GLY 114 VAL 115 ASP 116 ARG 117 LYS 118 LEU 119 CYS 120 GLU 121 ALA 122 LYS 123 PRO 124 ASP 125 ILE 126 THR 127 PHE 128 PRO 129 GLN 130 LYS 131 PHE 132 LEU 133 SER 134 GLN 135 ASN 136 THR 137 ASP 138 TYR 139 LYS 140 CYS 141 SER 142 GLY 143 PHE 144 ASP 145 ARG 146 GLY 147 ALA 148 LEU 149 ALA 150 ALA 151 ALA 152 GLY 153 ASN 154 HIS 155 ARG 156 LYS 157 SER 158 GLN 159 LEU 160 ALA 161 VAL 162 ASP 163 GLN 164 THR 165 PHE 166 TYR 167 LEU 168 SER 169 ASN 170 MET 171 SER 172 PRO 173 GLN 174 VAL 175 GLY 176 ARG 177 GLY 178 PHE 179 ASN 180 ARG 181 ASP 182 LYS 183 TRP 184 ASN 185 ASP 186 LEU 187 GLU 188 MET 189 HIS 190 CYS 191 ARG 192 ARG 193 VAL 194 ALA 195 LYS 196 LYS 197 MET 198 ILE 199 ASN 200 SER 201 TYR 202 ILE 203 ILE 204 THR 205 GLY 206 PRO 207 LEU 208 TYR 209 LEU 210 PRO 211 LYS 212 LEU 213 GLU 214 GLY 215 ASP 216 GLY 217 LYS 218 LYS 219 TYR 220 ILE 221 LYS 222 TYR 223 GLN 224 VAL 225 ILE 226 GLY 227 ASP 228 ASN 229 ASN 230 VAL 231 ALA 232 VAL 233 PRO 234 THR 235 HIS 236 PHE 237 PHE 238 LYS 239 VAL 240 ALA 241 LEU 242 PHE 243 GLU 244 VAL 245 THR 246 PRO 247 GLY 248 LYS 249 PHE 250 GLU 251 LEU 252 GLU 253 SER 254 TYR 255 ILE 256 LEU 257 PRO 258 ASN 259 ALA 260 VAL 261 ILE 262 GLU 263 ASP 264 THR 265 VAL 266 GLU 267 ILE 268 SER 269 LYS 270 PHE 271 HIS 272 VAL 273 PRO 274 LEU 275 ASP 276 ALA 277 VAL 278 GLU 279 ARG 280 SER 281 ALA 282 GLY 283 LEU 284 GLU 285 ILE 286 PHE 287 ALA 288 ARG 289 LEU 290 ASP 291 PRO 292 LYS 293 SER 294 ILE 295 VAL 296 LYS 297 GLU 298 ASN 299 GLY 300 ALA 301

Unit 2

PRO 63 SER 64 ARG 65 SER 66 ALA 67 GLU 68 ILE 69 MET 70 LYS 71 HIS 72 GLY 73 TYR 74 PRO 75 GLY 76 PHE 77 THR 78 ASN 79 VAL 80 ARG 81 THR 82 TYR 83 GLU 84 ASP 85 PHE 86 VAL 87 LEU 88 SER 89 TYR 90 ASP 91 TYR 92 LYS 93 THR 94 ARG 95 THR 96 ALA 97 HIS 98 TRP 99 VAL 100 CYS 101 GLU 102 HIS 103 LEU 104 THR 105 PRO 106 GLU 107 ARG 108 LEU 109 LYS 110 HIS 111 ALA 112 GLU 113 GLY 114 VAL 115 ASP 116 ARG 117 LYS 118 LEU 119 CYS 120 GLU 121 ALA 122 LYS 123 PRO 124 ASP 125 ILE 126 THR 127 PHE 128 PRO 129 GLN 130 LYS 131 PHE 132 LEU 133 SER 134 GLN 135 ASN 136 THR 137 ASP 138 TYR 139 LYS 140 CYS 141 SER 142 GLY 143 PHE 144 ASP 145 ARG 146 GLY 147 ALA 148 LEU 149 ALA 150 ALA 151 ALA 152 GLY 153 ASN 154 HIS 155 ARG 156 LYS 157 SER 158 GLN 159 LEU 160 ALA 161 VAL 162 ASP 163 GLN 164 THR 165 PHE 166 TYR 167 LEU 168 SER 169 ASN 170 MET 171 SER 172 PRO 173 GLN 174 VAL 175 GLY 176 ARG 177 GLY 178 PHE 179 ASN 180 ARG 181 ASP 182 LYS 183 TRP 184 ASN 185 ASP 186 LEU 187 GLU 188 MET 189 HIS 190 CYS 191 ARG 192 ARG 193 VAL 194 ALA 195 LYS 196 LYS 197 MET 198 ILE 199 ASN 200 SER 201 TYR 202 ILE 203 ILE 204 THR 205 GLY 206 PRO 207 LEU 208 TYR 209 LEU 210 PRO 211 LYS 212 LEU 213 GLU 214 GLY 215 ASP 216 GLY 217 LYS 218 LYS 219 TYR 220 ILE 221 LYS 222 TYR 223 GLN 224 VAL 225 ILE 226 GLY 227 ASP 228 ASN 229 ASN 230 VAL 231 ALA 232 VAL 233 PRO 234 THR 235 HIS 236 PHE 237 PHE 238 LYS 239 VAL 240 ALA 241 LEU 242 PHE 243 GLU 244 VAL 245 THR 246 PRO 247 GLY 248 LYS 249 PHE 250 GLU 251 LEU 252 GLU 253 SER 254 TYR 255 ILE 256 LEU 257 PRO 258 ASN 259 ALA 260 VAL 261 ILE 262 GLU 263 THR 265 VAL 266 GLU 267 ILE 268 SER 269 LYS 270 PHE 271 HIS 272 VAL 273 PRO 274 LEU 275 ASP 276 ALA 277 VAL 278 GLU 279 ARG 280 SER 281 ALA 282 GLY 283 LEU 284 GLU 285 ILE 286 PHE 287 ALA 288 ARG 289 LEU 290 ASP 291 PRO 292 LYS 293 SER 294 ILE 295 VAL 296 LYS 297 GLU 298 ASN 299 GLY 300 ALA 301 LYS 302

Other macromolecules

Unit 3	DT -3 DT -2 DT -1 DT 0 DT 1
Unit 4	DT -3 DT -2 DT -1 DT 0 DT 1

Ligands

Unit 5	MG 401
Unit 6	MG 401