5GKE - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF ENDOMS-DSDNA1 COMPLEX
• Keywords: ENDONUCLEASES, DNA-BINDING, HYDROLASE-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5GKE	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ENDONUCLEASE ENDOMS	A	239	1900	0
2	Protein	ENDONUCLEASE ENDOMS	B	239	1900	0
3	Other macromolecule	DNA (5'-D(*CP*GP*CP*TP*AP*CP*AP*TP*GP*TP*CP*GP*TP 3')	C	15	299	0
4	Other macromolecule	DNA (5'-D(*GP*GP*AP*CP*GP*AP*CP*GP*TP*GP*TP*AP*GP 3')	D	15	311	0
5	Ligand	ENDONUCLEASE ENDOMS	A	3	0	17
6	Ligand	ENDONUCLEASE ENDOMS	B	1	0	1
7	Ligand	DNA (5'-D(*CP*GP*CP*TP*AP*CP*AP*TP*GP*TP*CP*GP*TP 3')	C	2	0	16
8	Ligand	DNA (5'-D(*GP*GP*AP*CP*GP*AP*CP*GP*TP*GP*TP*AP*GP 3')	D	1	0	8
9	Water			66	0	66
total				581	4410	108

Proteins

Unit 1

SER 2 LYS 3 ASP 4 LYS 5 VAL 6 THR 7 VAL 8 ILE 9 THR 10 SER 11 PRO 12 SER 13 THR 14 GLU 15 GLU 16 LEU 17 VAL 18 SER 19 LEU 20 VAL 21 ASN 22 SER 23 ALA 24 LEU 25 LEU 26 GLU 27 GLU 28 ALA 29 MET 30 LEU 31 THR 32 ILE 33 PHE 34 ALA 35 ARG 36 CYS 37 LYS 38 VAL 39 HIS 40 TYR 41 ASP 42 GLY 43 ARG 44 ALA 45 LYS 46 SER 47 GLU 48 LEU 49 GLY 50 SER 51 GLY 52 ASP 53 ARG 54 VAL 55 ILE 56 ILE 57 VAL 58 LYS 59 PRO 60 ASP 61 GLY 62 SER 63 PHE 64 LEU 65 ILE 66 HIS 67 GLN 68 SER 69 LYS 70 LYS 71 ARG 72 GLU 73 PRO 74 VAL 75 ASN 76 TRP 77 GLN 78 PRO 79 PRO 80 GLY 81 SER 82 ARG 83 VAL 84 ARG 85 LEU 86 GLU 87 LEU 88 ARG 89 GLU 90 ASN 91 PRO 92 VAL 93 LEU 94 VAL 95 SER 96 ILE 97 ARG 98 ARG 99 LYS 100 PRO 101 ARG 102 GLU 103 THR 104 LEU 105 GLU 106 VAL 107 GLU 108 LEU 109 GLU 110 GLU 111 VAL 112 TYR 113 MET 114 VAL 115 SER 116 VAL 117 PHE 118 ARG 119 ALA 120 GLU 121 ASP 122 TYR 123 GLU 124 GLU 125 LEU 126 ALA 127 LEU 128 THR 129 GLY 130 SER 131 GLU 132 ALA 133 GLU 134 MET 135 ALA 136 GLU 137 LEU 138 ILE 139 PHE 140 GLU 141 ASN 142 PRO 143 GLU 144 VAL 145 ILE 146 GLU 147 PRO 148 GLY 149 PHE 150 LYS 151 PRO 152 LEU 153 PHE 154 ARG 155 GLU 156 LYS 157 ALA 158 ILE 159 GLY 160 THR 161 GLY 162 ILE 163 VAL 164 ALA 165 VAL 166 LEU 167 GLY 168 ARG 169 ASP 170 SER 171 ASP 172 GLY 173 ASN 174 ILE 175 VAL 176 VAL 177 LEU 178 GLU 179 LEU 180 LYS 181 ARG 182 ARG 183 ARG 184 ALA 185 GLU 186 LEU 187 HIS 188 ALA 189 VAL 190 ARG 191 GLN 192 LEU 193 LYS 194 SER 195 TYR 196 VAL 197 GLU 198 ILE 199 LEU 200 ARG 201 GLU 202 GLU 203 TYR 204 GLY 205 ASP 206 LYS 207 VAL 208 ARG 209 GLY 210 ILE 211 LEU 212 VAL 213 ALA 214 PRO 215 SER 216 LEU 217 THR 218 SER 219 GLY 220 ALA 221 LYS 222 ARG 223 LEU 224 LEU 225 GLU 226 LYS 227 GLU 228 GLY 229 LEU 230 GLU 231 PHE 232 ARG 233 LYS 234 LEU 235 GLU 236 PRO 237 PRO 238 LYS 239 ARG 240

Unit 2

SER 2 LYS 3 ASP 4 LYS 5 VAL 6 THR 7 VAL 8 ILE 9 THR 10 SER 11 PRO 12 SER 13 THR 14 GLU 15 GLU 16 LEU 17 VAL 18 SER 19 LEU 20 VAL 21 ASN 22 SER 23 ALA 24 LEU 25 LEU 26 GLU 27 GLU 28 ALA 29 MET 30 LEU 31 THR 32 ILE 33 PHE 34 ALA 35 ARG 36 CYS 37 LYS 38 VAL 39 HIS 40 TYR 41 ASP 42 GLY 43 ARG 44 ALA 45 LYS 46 SER 47 GLU 48 LEU 49 GLY 50 SER 51 GLY 52 ASP 53 ARG 54 VAL 55 ILE 56 ILE 57 VAL 58 LYS 59 PRO 60 ASP 61 GLY 62 SER 63 PHE 64 LEU 65 ILE 66 HIS 67 GLN 68 SER 69 LYS 70 LYS 71 ARG 72 GLU 73 PRO 74 VAL 75 ASN 76 TRP 77 GLN 78 PRO 79 PRO 80 GLY 81 SER 82 ARG 83 VAL 84 ARG 85 LEU 86 GLU 87 LEU 88 ARG 89 GLU 90 ASN 91 PRO 92 VAL 93 LEU 94 VAL 95 SER 96 ILE 97 ARG 98 ARG 99 LYS 100 PRO 101 ARG 102 GLU 103 THR 104 LEU 105 GLU 106 VAL 107 GLU 108 LEU 109 GLU 110 GLU 111 VAL 112 TYR 113 MET 114 VAL 115 SER 116 VAL 117 PHE 118 ARG 119 ALA 120 GLU 121 ASP 122 TYR 123 GLU 124 GLU 125 LEU 126 ALA 127 LEU 128 THR 129 GLY 130 SER 131 GLU 132 ALA 133 GLU 134 MET 135 ALA 136 GLU 137 LEU 138 ILE 139 PHE 140 GLU 141 ASN 142 PRO 143 GLU 144 VAL 145 ILE 146 GLU 147 PRO 148 GLY 149 PHE 150 LYS 151 PRO 152 LEU 153 PHE 154 ARG 155 GLU 156 LYS 157 ALA 158 ILE 159 GLY 160 THR 161 GLY 162 ILE 163 VAL 164 ALA 165 VAL 166 LEU 167 GLY 168 ARG 169 ASP 170 SER 171 ASP 172 GLY 173 ASN 174 ILE 175 VAL 176 VAL 177 LEU 178 GLU 179 LEU 180 LYS 181 ARG 182 ARG 183 ARG 184 ALA 185 GLU 186 LEU 187 HIS 188 ALA 189 VAL 190 ARG 191 GLN 192 LEU 193 LYS 194 SER 195 TYR 196 VAL 197 GLU 198 ILE 199 LEU 200 ARG 201 GLU 202 GLU 203 TYR 204 GLY 205 ASP 206 LYS 207 VAL 208 ARG 209 GLY 210 ILE 211 LEU 212 VAL 213 ALA 214 PRO 215 SER 216 LEU 217 THR 218 SER 219 GLY 220 ALA 221 LYS 222 ARG 223 LEU 224 LEU 225 GLU 226 LYS 227 GLU 228 GLY 229 LEU 230 GLU 231 PHE 232 ARG 233 LYS 234 LEU 235 GLU 236 PRO 237 PRO 238 LYS 239 ARG 240

Other macromolecules

Unit 3	DC 1 DG 2 DC 3 DT 4 DA 5 DC 6 DA 7 DT 8 DG 9 DT 10 DC 11 DG 12 DT 13 DC 14 DC 15
Unit 4	DG 1 DG 2 DA 3 DC 4 DG 5 DA 6 DC 7 DG 8 DT 9 DG 10 DT 11 DA 12 DG 13 DC 14 DG 15

Ligands

Unit 5	MG 301 MPD 302 MPD 303
Unit 6	MG 301
Unit 7	MPD 101 MPD 102
Unit 8	MPD 101