5GIR - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF A FAB FRAGMENT WITH ITS LIGAND PEPTIDE
• Keywords: FAB, PEPTIDE LIGAND, MUTATION, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5GIR	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HEAVY CHAIN OF FAB FRAGMENT	H	209	1572	8
2	Protein	LIGHT CHAIN OF FAB FRAGMENT	L	212	1652	0
3	Protein	HEAVY CHAIN OF FAB FRAGMENT	A	207	1562	8
4	Protein	LIGHT CHAIN OF FAB FRAGMENT	B	211	1644	0
5	Protein	LYS-PRO-ILE-ILE-ILE-GLY-SER-HIS-ALA-TYR-GLY-ASP	C	12	90	0
6	Protein	LYS-PRO-ILE-ILE-ILE-GLY-SER-HIS-ALA-TYR-GLY-ASP	D	10	77	0
7	Ligand	HEAVY CHAIN OF FAB FRAGMENT	H	3	0	15
8	Ligand	LIGHT CHAIN OF FAB FRAGMENT	L	3	0	15
9	Ligand	HEAVY CHAIN OF FAB FRAGMENT	A	4	0	30
10	Ligand	LIGHT CHAIN OF FAB FRAGMENT	B	1	0	5
11	Water			495	0	495
total				1367	6597	576

Proteins

Unit 1	PCA 1 VAL 2 GLN 3 LEU 4 GLN 5 GLN 6 PRO 7 GLY 8 ALA 9 GLU 10 LEU 11 VAL 12 ARG 13 PRO 14 GLY 15 ALA 16 SER 17 VAL 18 LYS 19 LEU 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 TYR 27 THR 28 PHE 29 THR 30 SER 31 TYR 32 TRP 33 MET 34 ASN 35 TRP 36 VAL 37 LYS 38 GLN 39 ARG 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 CYS 47 ILE 48 GLY 49 MET 50 ILE 51 HIS 52 PRO 52A SER 53 ASP 54 GLY 55 GLU 56 THR 57 ARG 58 LEU 59 ASN 60 GLN 61 LYS 62 PHE 63 LYS 64 ASP 65 LYS 66 ALA 67 THR 68 LEU 69 THR 70 LEU 71 ASP 72 LYS 73 SER 74 SER 75 SER 76 THR 77 ALA 78 TYR 79 MET 80 GLN 81 LEU 82 SER 82A SER 82B PRO 82C THR 83 SER 84 GLU 85 ASP 86 SER 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 THR 93 THR 94 HIS 95 PHE 96 ASP 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 THR 108 LEU 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 LYS 115 THR 116 THR 117 ALA 118 PRO 119 SER 120 VAL 121 TYR 122 PRO 123 LEU 124 ALA 125 PRO 126 VAL 127 CYS 128 GLY 133 SER 134 SER 135 VAL 136 THR 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 GLY 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 LEU 152 THR 153 TRP 154 ASN 155 SER 156 GLY 157 SER 158 LEU 159 SER 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 ASP 173 LEU 174 TYR 175 THR 176 LEU 177 SER 178 SER 179 SER 180 VAL 181 THR 182 VAL 183 THR 184 SER 185 SER 186 THR 187 TRP 188 PRO 189 SER 190 GLN 191 SER 192 ILE 193 THR 194 CYS 195 ASN 196 VAL 197 ALA 198 HIS 199 PRO 200 ALA 201 SER 202 SER 203 THR 204 LYS 205 VAL 206 ASP 207 LYS 208 LYS 209 ILE 210 GLU 211 PRO 212 ARG 213
Unit 2	ASP 1 ILE 2 VAL 3 LEU 4 ILE 5 GLN 6 SER 7 PRO 8 ALA 9 THR 10 LEU 11 SER 12 VAL 13 THR 14 PRO 15 GLY 16 ASP 17 SER 18 VAL 19 SER 20 LEU 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 ARG 28 ILE 29 SER 30 ASN 31 ASN 32 LEU 33 HIS 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 SER 40 HIS 41 GLU 42 SER 43 PRO 44 ARG 45 LEU 46 LEU 47 ILE 48 ARG 49 TYR 50 THR 51 SER 52 GLN 53 SER 54 ILE 55 SER 56 GLY 57 ILE 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 SER 74 ILE 75 ASN 76 SER 77 VAL 78 GLU 79 THR 80 GLU 81 ASP 82 PHE 83 GLY 84 MET 85 TYR 86 PHE 87 CYS 88 GLN 89 GLN 90 SER 91 ASN 92 SER 93 TRP 94 PRO 95 PHE 96 THR 97 PHE 98 GLY 99 SER 100 GLY 101 THR 102 LYS 103 LEU 104 GLU 105 MET 106 LYS 107 ARG 108 ALA 109 ASP 110 ALA 111 ALA 112 PRO 113 THR 114 VAL 115 SER 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLN 124 LEU 125 THR 126 SER 127 GLY 128 GLY 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 PHE 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 LYS 142 ASP 143 ILE 144 ASN 145 VAL 146 LYS 147 TRP 148 LYS 149 ILE 150 ASP 151 GLY 152 SER 153 GLU 154 ARG 155 GLN 156 ASN 157 GLY 158 VAL 159 LEU 160 ASN 161 SER 162 TRP 163 THR 164 ASP 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 MET 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 THR 182 LYS 183 ASP 184 GLU 185 TYR 186 GLU 187 ARG 188 HIS 189 ASN 190 SER 191 TYR 192 THR 193 CYS 194 GLU 195 ALA 196 THR 197 HIS 198 LYS 199 THR 200 SER 201 THR 202 SER 203 PRO 204 ILE 205 VAL 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 ASN 212
Unit 3	PCA 1 VAL 2 GLN 3 LEU 4 GLN 5 GLN 6 PRO 7 GLY 8 ALA 9 GLU 10 LEU 11 VAL 12 ARG 13 PRO 14 GLY 15 ALA 16 SER 17 VAL 18 LYS 19 LEU 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 TYR 27 THR 28 PHE 29 THR 30 SER 31 TYR 32 TRP 33 MET 34 ASN 35 TRP 36 VAL 37 LYS 38 GLN 39 ARG 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 CYS 47 ILE 48 GLY 49 MET 50 ILE 51 HIS 52 PRO 52A SER 53 ASP 54 GLY 55 GLU 56 THR 57 ARG 58 LEU 59 ASN 60 GLN 61 LYS 62 PHE 63 LYS 64 ASP 65 LYS 66 ALA 67 THR 68 LEU 69 THR 70 LEU 71 ASP 72 LYS 73 SER 74 SER 75 SER 76 THR 77 ALA 78 TYR 79 MET 80 GLN 81 LEU 82 SER 82A SER 82B PRO 82C THR 83 SER 84 GLU 85 ASP 86 SER 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 THR 93 THR 94 HIS 95 PHE 96 ASP 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 THR 108 LEU 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 LYS 115 THR 116 THR 117 ALA 118 PRO 119 SER 120 VAL 121 TYR 122 PRO 123 LEU 124 ALA 125 PRO 126 VAL 127 CYS 128 SER 135 VAL 136 THR 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 GLY 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 LEU 152 THR 153 TRP 154 ASN 155 SER 156 GLY 157 SER 158 LEU 159 SER 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 ASP 173 LEU 174 TYR 175 THR 176 LEU 177 SER 178 SER 179 SER 180 VAL 181 THR 182 VAL 183 THR 184 SER 185 SER 186 THR 187 TRP 188 PRO 189 SER 190 GLN 191 SER 192 ILE 193 THR 194 CYS 195 ASN 196 VAL 197 ALA 198 HIS 199 PRO 200 ALA 201 SER 202 SER 203 THR 204 LYS 205 VAL 206 ASP 207 LYS 208 LYS 209 ILE 210 GLU 211 PRO 212 ARG 213
Unit 4	ASP 1 ILE 2 VAL 3 LEU 4 ILE 5 GLN 6 SER 7 PRO 8 ALA 9 THR 10 LEU 11 SER 12 VAL 13 THR 14 PRO 15 GLY 16 ASP 17 SER 18 VAL 19 SER 20 LEU 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 ARG 28 ILE 29 SER 30 ASN 31 ASN 32 LEU 33 HIS 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 SER 40 HIS 41 GLU 42 SER 43 PRO 44 ARG 45 LEU 46 LEU 47 ILE 48 ARG 49 TYR 50 THR 51 SER 52 GLN 53 SER 54 ILE 55 SER 56 GLY 57 ILE 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 SER 74 ILE 75 ASN 76 SER 77 VAL 78 GLU 79 THR 80 GLU 81 ASP 82 PHE 83 GLY 84 MET 85 TYR 86 PHE 87 CYS 88 GLN 89 GLN 90 SER 91 ASN 92 SER 93 TRP 94 PRO 95 PHE 96 THR 97 PHE 98 GLY 99 SER 100 GLY 101 THR 102 LYS 103 LEU 104 GLU 105 MET 106 LYS 107 ARG 108 ALA 109 ASP 110 ALA 111 ALA 112 PRO 113 THR 114 VAL 115 SER 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLN 124 LEU 125 THR 126 SER 127 GLY 128 GLY 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 PHE 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 LYS 142 ASP 143 ILE 144 ASN 145 VAL 146 LYS 147 TRP 148 LYS 149 ILE 150 ASP 151 GLY 152 SER 153 GLU 154 ARG 155 GLN 156 ASN 157 GLY 158 VAL 159 LEU 160 ASN 161 SER 162 TRP 163 THR 164 ASP 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 MET 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 THR 182 LYS 183 ASP 184 GLU 185 TYR 186 GLU 187 ARG 188 HIS 189 ASN 190 SER 191 TYR 192 THR 193 CYS 194 GLU 195 ALA 196 THR 197 HIS 198 LYS 199 THR 200 SER 201 THR 202 SER 203 PRO 204 ILE 205 VAL 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211
Unit 5	LYS 126 PRO 127 ILE 128 ILE 129 ILE 130 GLY 131 SER 132 HIS 133 ALA 134 TYR 135 GLY 136 ASP 137
Unit 6	LYS 126 PRO 127 ILE 128 ILE 129 ILE 130 GLY 131 SER 132 HIS 133 ALA 134 TYR 135

Ligands

Unit 7	SO4 301 SO4 302 SO4 303
Unit 8	SO4 301 SO4 302 SO4 303
Unit 9	SO4 301 SO4 302 EDO 303 EDO 304
Unit 10	SO4 301