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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N- ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH MN, UDP AND M PEPTIDE
Keywords GLYCOSYLTRANSFEREASE, O-MANNOSYLATION, ALPHA-DYSTROGLYCAN, TRANSFERASE, SUGAR BINDING PROTEIN-SUBSTRATE COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5GGI     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROTEIN O-LINKED-MANNOSE BETA-1,2-N- ACETYLGLUCOSAMINYLTRANSFERASE 1  A 394 3221 0
2  Protein   PROTEIN O-LINKED-MANNOSE BETA-1,2-N- ACETYLGLUCOSAMINYLTRANSFERASE 1  B 551 4410 0
3  Protein   MANNOSYL-PEPTIDE  F 10 55 3
4  Protein   MANNOSYL-PEPTIDE  G 5 31 0
5  Ligand   PROTEIN O-LINKED-MANNOSE BETA-1,2-N- ACETYLGLUCOSAMINYLTRANSFERASE 1  A 3 0 31
6  Ligand   PROTEIN O-LINKED-MANNOSE BETA-1,2-N- ACETYLGLUCOSAMINYLTRANSFERASE 1  B 2 0 26
7  Ligand   MANNOSYL-PEPTIDE  F 1 0 11
8  Ligand   MANNOSYL-PEPTIDE  G 1 0 11
9 Water     101 0 101
total       1068 7717 183
Proteins
Unit 1 CYS254 HIS255 TRP256 ALA257 ASP258 THR259 GLU260 LEU261 ASN262 ARG263 ARG264 ARG265 ARG266 ARG267 PHE268 CYS269 SER270 LYS271 VAL272 GLU273 GLY274 TYR275 GLY276 SER277 VAL278 CYS279 SER280 CYS281 LYS282 ASP283 PRO284 THR285 PRO286 ILE287 GLU288 PHE289 SER290 PRO291 ASP292 PRO293 LEU294 PRO295 ASP296 ASN297 LYS298 VAL299 LEU300 ASN301 VAL302 PRO303 VAL304 ALA305 VAL306 ILE307 ALA308 GLY309 ASN310 ARG311 PRO312 ASN313 TYR314 LEU315 TYR316 ARG317 MET318 LEU319 ARG320 SER321 LEU322 LEU323 SER324 ALA325 GLN326 GLY327 VAL328 SER329 PRO330 GLN331 MET332 ILE333 THR334 VAL335 PHE336 ILE337 ASP338 GLY339 TYR340 TYR341 GLU342 GLU343 PRO344 MET345 ASP346 VAL347 VAL348 ALA349 LEU350 PHE351 GLY352 LEU353 ARG354 GLY355 ILE356 GLN357 HIS358 THR359 PRO360 ILE361 SER362 ILE363 LYS364 ASN365 ALA366 ARG367 VAL368 SER369 GLN370 HIS371 TYR372 LYS373 ALA374 SER375 LEU376 THR377 ALA378 THR379 PHE380 ASN381 LEU382 PHE383 PRO384 GLU385 ALA386 LYS387 PHE388 ALA389 VAL390 VAL391 LEU392 GLU393 GLU394 ASP395 LEU396 ASP397 ILE398 ALA399 VAL400 ASP401 PHE402 PHE403 SER404 PHE405 LEU406 SER407 GLN408 SER409 ILE410 HIS411 LEU412 LEU413 GLU414 GLU415 ASP416 ASP417 SER418 LEU419 TYR420 CYS421 ILE422 SER423 ALA424 TRP425 ASN426 ASP427 GLN428 GLY429 TYR430 GLU431 HIS432 THR433 ALA434 GLU435 ASP436 PRO437 ALA438 LEU439 LEU440 TYR441 ARG442 VAL443 GLU444 THR445 MET446 PRO447 GLY448 LEU449 GLY450 TRP451 VAL452 LEU453 ARG454 ARG455 SER456 LEU457 TYR458 LYS459 GLU460 GLU461 LEU462 GLU463 PRO464 LYS465 TRP466 PRO467 THR468 PRO469 GLU470 LYS471 LEU472 TRP473 ASP474 TRP475 ASP476 MET477 TRP478 MET479 ARG480 MET481 PRO482 GLU483 GLN484 ARG485 ARG486 GLY487 ARG488 GLU489 CYS490 ILE491 ILE492 PRO493 ASP494 VAL495 SER496 ARG497 SER498 TYR499 HIS500 PHE501 GLY502 ILE503 VAL504 GLY505 LEU506 ASN507 MET508 ASN509 GLY510 TYR511 PHE512 HIS513 GLU514 ALA515 TYR516 PHE517 LYS518 LYS519 HIS520 LYS521 PHE522 ASN523 THR524 VAL525 PRO526 GLY527 VAL528 GLN529 LEU530 ARG531 ASN532 VAL533 ASP534 SER535 LEU536 LYS537 LYS538 GLU539 ALA540 TYR541 GLU542 VAL543 GLU544 VAL545 HIS546 ARG547 LEU548 LEU549 SER550 GLU551 ALA552 GLU553 VAL554 LEU555 ASP556 HIS557 SER558 LYS559 ASN560 PRO561 CYS562 GLU563 ASP564 SER565 PHE566 LEU567 PRO568 ASP569 THR570 GLU571 GLY572 HIS573 THR574 TYR575 VAL576 ALA577 PHE578 ILE579 ARG580 MET581 GLU582 LYS583 ASP584 ASP585 ASP586 PHE587 THR588 THR589 TRP590 THR591 GLN592 LEU593 ALA594 LYS595 CYS596 LEU597 HIS598 ILE599 TRP600 ASP601 LEU602 ASP603 VAL604 ARG605 GLY606 ASN607 HIS608 ARG609 GLY610 LEU611 TRP612 ARG613 LEU614 PHE615 ARG616 LYS617 LYS618 ASN619 HIS620 PHE621 LEU622 VAL623 VAL624 GLY625 VAL626 PRO627 ALA628 SER629 PRO630 TYR631 SER632 VAL633 LYS634 LYS635 PRO636 PRO637 SER638 VAL639 THR640 PRO641 ILE642 PHE643 LEU644 GLU645 PRO646 PRO647
Unit 2 ARG97 VAL98 LEU99 ASP100 VAL101 GLU102 VAL103 TYR104 SER105 SER106 ARG107 SER108 LYS109 VAL110 TYR111 VAL112 ALA113 VAL114 ASP115 GLY116 THR117 THR118 VAL119 LEU120 GLU121 ASP122 GLU123 ALA124 ARG125 GLU126 GLN127 GLY128 ARG129 GLY130 ILE131 HIS132 VAL133 ILE134 VAL135 LEU136 ASN137 GLN138 ALA139 THR140 GLY141 HIS142 VAL143 MET144 ALA145 LYS146 ARG147 VAL148 PHE149 ASP150 THR151 TYR152 SER153 PRO154 HIS155 GLU156 ASP157 GLU158 ALA159 MET160 VAL161 LEU162 PHE163 LEU164 ASN165 MET166 VAL167 ALA168 PRO169 GLY170 ARG171 VAL172 LEU173 ILE174 CYS175 THR176 VAL177 LYS178 ASP179 GLU180 GLY181 SER182 PHE183 HIS184 LEU185 LYS186 ASP187 THR188 ALA189 LYS190 ALA191 LEU192 LEU193 ARG194 SER195 LEU196 GLY197 SER198 GLN199 ALA200 GLY201 PRO202 ALA203 LEU204 GLY205 TRP206 ARG207 ASP208 THR209 TRP210 ALA211 PHE212 VAL213 GLY214 ARG215 LYS216 GLY217 GLY218 PRO219 VAL220 PHE221 GLY222 GLU223 LYS224 HIS225 SER226 LYS227 SER228 PRO229 ALA230 LEU231 SER232 SER233 TRP234 GLY235 ASP236 PRO237 VAL238 LEU239 LEU240 LYS241 THR242 ASP243 VAL244 PRO245 LEU246 SER247 SER248 ALA249 GLU250 GLU251 ALA252 GLU253 CYS254 HIS255 TRP256 ALA257 ASP258 THR259 GLU260 LEU261 ASN262 ARG263 ARG264 ARG265 ARG266 ARG267 PHE268 CYS269 SER270 LYS271 VAL272 GLU273 GLY274 TYR275 GLY276 SER277 VAL278 CYS279 SER280 CYS281 LYS282 ASP283 PRO284 THR285 PRO286 ILE287 GLU288 PHE289 SER290 PRO291 ASP292 PRO293 LEU294 PRO295 ASP296 ASN297 LYS298 VAL299 LEU300 ASN301 VAL302 PRO303 VAL304 ALA305 VAL306 ILE307 ALA308 GLY309 ASN310 ARG311 PRO312 ASN313 TYR314 LEU315 TYR316 ARG317 MET318 LEU319 ARG320 SER321 LEU322 LEU323 SER324 ALA325 GLN326 GLY327 VAL328 SER329 PRO330 GLN331 MET332 ILE333 THR334 VAL335 PHE336 ILE337 ASP338 GLY339 TYR340 TYR341 GLU342 GLU343 PRO344 MET345 ASP346 VAL347 VAL348 ALA349 LEU350 PHE351 GLY352 LEU353 ARG354 GLY355 ILE356 GLN357 HIS358 THR359 PRO360 ILE361 SER362 ILE363 LYS364 ASN365 ALA366 ARG367 VAL368 SER369 GLN370 HIS371 TYR372 LYS373 ALA374 SER375 LEU376 THR377 ALA378 THR379 PHE380 ASN381 LEU382 PHE383 PRO384 GLU385 ALA386 LYS387 PHE388 ALA389 VAL390 VAL391 LEU392 GLU393 GLU394 ASP395 LEU396 ASP397 ILE398 ALA399 VAL400 ASP401 PHE402 PHE403 SER404 PHE405 LEU406 SER407 GLN408 SER409 ILE410 HIS411 LEU412 LEU413 GLU414 GLU415 ASP416 ASP417 SER418 LEU419 TYR420 CYS421 ILE422 SER423 ALA424 TRP425 ASN426 ASP427 GLN428 GLY429 TYR430 GLU431 HIS432 THR433 ALA434 GLU435 ASP436 PRO437 ALA438 LEU439 LEU440 TYR441 ARG442 VAL443 GLU444 THR445 MET446 PRO447 GLY448 LEU449 GLY450 TRP451 VAL452 LEU453 ARG454 ARG455 SER456 LEU457 TYR458 LYS459 GLU460 GLU461 LEU462 GLU463 PRO464 LYS465 TRP466 PRO467 THR468 PRO469 GLU470 LYS471 LEU472 TRP473 ASP474 TRP475 ASP476 MET477 TRP478 MET479 ARG480 MET481 PRO482 GLU483 GLN484 ARG485 ARG486 GLY487 ARG488 GLU489 CYS490 ILE491 ILE492 PRO493 ASP494 VAL495 SER496 ARG497 SER498 TYR499 HIS500 PHE501 GLY502 ILE503 VAL504 GLY505 LEU506 ASN507 MET508 ASN509 GLY510 TYR511 PHE512 HIS513 GLU514 ALA515 TYR516 PHE517 LYS518 LYS519 HIS520 LYS521 PHE522 ASN523 THR524 VAL525 PRO526 GLY527 VAL528 GLN529 LEU530 ARG531 ASN532 VAL533 ASP534 SER535 LEU536 LYS537 LYS538 GLU539 ALA540 TYR541 GLU542 VAL543 GLU544 VAL545 HIS546 ARG547 LEU548 LEU549 SER550 GLU551 ALA552 GLU553 VAL554 LEU555 ASP556 HIS557 SER558 LYS559 ASN560 PRO561 CYS562 GLU563 ASP564 SER565 PHE566 LEU567 PRO568 ASP569 THR570 GLU571 GLY572 HIS573 THR574 TYR575 VAL576 ALA577 PHE578 ILE579 ARG580 MET581 GLU582 LYS583 ASP584 ASP585 ASP586 PHE587 THR588 THR589 TRP590 THR591 GLN592 LEU593 ALA594 LYS595 CYS596 LEU597 HIS598 ILE599 TRP600 ASP601 LEU602 ASP603 VAL604 ARG605 GLY606 ASN607 HIS608 ARG609 GLY610 LEU611 TRP612 ARG613 LEU614 PHE615 ARG616 LYS617 LYS618 ASN619 HIS620 PHE621 LEU622 VAL623 VAL624 GLY625 VAL626 PRO627 ALA628 SER629 PRO630 TYR631 SER632 VAL633 LYS634 LYS635 PRO636 PRO637 SER638 VAL639 THR640 PRO641 ILE642 PHE643 LEU644 GLU645 PRO646 PRO647
Unit 3 ACE0 ALA1 ALA2 PRO3 THR4 PRO5 VAL6 ALA7 ALA8 PRO9
Unit 4 ALA1 ALA2 PRO3 THR4 PRO5
Ligands
Unit 5 UDP701 MN702 PO4703
Unit 6 UDP701 MN702
Unit 7 MAN101
Unit 8 MAN101
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany