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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE A OF GROUP II INTRON COMPLEXED WITH ITS REVERSE TRANSCRIPTASE
Keywords TRANSFERASE, GROUP II INTRONS, RIBONUCLEOPROTEIN, INTRON-ENC PROTEIN, RETROTRANSPOSONS AND SPLICEOSOM
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5G2X     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 692 14825 0
2  RNA    B 12 250 0
3  Protein   GROUP II INTRON-ENCODED PROTEIN LTRA  C 487 3997 0
total       1191 19072 0
Proteins
Unit 3 THR4 MET5 ALA6 ILE7 LEU8 GLU9 ARG10 ILE11 SER12 LYS13 ASN14 SER15 GLN16 GLU17 ASN18 ILE19 ASP20 GLU21 VAL22 PHE23 THR24 ARG25 LEU26 TYR27 ARG28 TYR29 LEU30 LEU31 ARG32 PRO33 ASP34 ILE35 TYR36 TYR37 VAL38 ALA39 TYR40 GLN41 ASN42 LEU43 TYR44 SER45 ASN46 LYS47 GLY48 ALA49 SER50 THR51 LYS52 GLY53 ILE54 LEU55 ASP56 ASP57 THR58 ALA59 ASP60 GLY61 PHE62 SER63 GLU64 GLU65 LYS66 ILE67 LYS68 LYS69 ILE70 ILE71 GLN72 SER73 LEU74 LYS75 ASP76 GLY77 THR78 TYR79 TYR80 PRO81 GLN82 PRO83 VAL84 ARG85 ARG86 MET87 TYR88 ILE89 ALA90 LYS91 LYS92 ASN93 SER94 LYS95 LYS96 MET97 ARG98 PRO99 LEU100 GLY101 ILE102 PRO103 THR104 PHE105 THR106 ASP107 LYS108 LEU109 ILE110 GLN111 GLU112 ALA113 VAL114 ARG115 ILE116 ILE117 LEU118 GLU119 SER120 ILE121 TYR122 GLU123 PRO124 VAL125 PHE126 GLU127 ASP128 VAL129 SER130 HIS131 GLY132 PHE133 ARG134 PRO135 GLN136 ARG137 SER138 CYS139 HIS140 THR141 ALA142 LEU143 LYS144 THR145 ILE146 LYS147 ARG148 GLU149 PHE150 GLY151 GLY152 ALA153 ARG154 TRP155 PHE156 VAL157 GLU158 GLY159 ASP160 ILE161 LYS162 GLY163 CYS164 PHE165 ASP166 ASN167 ILE168 ASP169 HIS170 VAL171 THR172 LEU173 ILE174 GLY175 LEU176 ILE177 ASN178 LEU179 LYS180 ILE181 LYS182 ASP183 MET184 LYS185 MET186 SER187 GLN188 LEU189 ILE190 TYR191 LYS192 PHE193 LEU194 LYS195 ALA196 GLY197 TYR198 LEU199 GLU200 ASN201 TRP202 GLN203 TYR204 HIS205 LYS206 THR207 TYR208 SER209 GLY210 THR211 PRO212 GLN213 GLY214 GLY215 ILE216 LEU217 SER218 PRO219 LEU220 LEU221 ALA222 ASN223 ILE224 TYR225 LEU226 HIS227 GLU228 LEU229 ASP230 LYS231 PHE232 VAL233 LEU234 GLN235 LEU236 LYS237 MET238 LYS239 PHE240 ASP241 ARG242 GLU243 SER244 PRO245 GLU246 ARG247 ILE248 THR249 PRO250 GLU251 LYS302 TYR303 VAL304 ARG305 TYR306 ALA307 ASP308 ASP309 PHE310 ILE311 ILE312 SER313 VAL314 LYS315 GLY316 SER317 LYS318 GLU319 ASP320 CYS321 GLN322 TRP323 ILE324 LYS325 GLU326 GLN327 LEU328 LYS329 LEU330 PHE331 ILE332 HIS333 ASN334 LYS335 LEU336 LYS337 MET338 GLU339 LEU340 SER341 GLU342 GLU343 LYS344 THR345 LEU346 ILE347 THR348 HIS349 SER350 SER351 GLN352 PRO353 ALA354 ARG355 PHE356 LEU357 GLY358 TYR359 ASP360 ILE361 ARG362 VAL363 VAL375 LYS376 LYS377 ARG378 THR379 LEU380 ASN381 GLY382 SER383 VAL384 GLU385 LEU386 LEU387 ILE388 PRO389 LEU390 GLN391 ASP392 LYS393 ILE394 ARG395 GLN396 PHE397 ILE398 PHE399 ASP400 LYS401 LYS402 ILE403 ALA404 ILE405 GLN406 LYS407 LYS408 ASP409 SER410 SER411 TRP412 PHE413 PRO414 VAL415 HIS416 ARG417 LYS418 TYR419 LEU420 ILE421 ARG422 SER423 THR424 ASP425 LEU426 GLU427 ILE428 ILE429 THR430 ILE431 TYR432 ASN433 SER434 GLU435 LEU436 ARG437 GLY438 ILE439 CYS440 ASN441 TYR442 TYR443 GLY444 LEU445 ALA446 SER447 ASN448 PHE449 ASN450 GLN451 LEU452 ASN453 TYR454 PHE455 ALA456 TYR457 LEU458 MET459 GLU460 TYR461 SER462 CYS463 LEU464 LYS465 THR466 ILE467 ALA468 SER469 LYS470 HIS471 LYS472 GLY473 THR474 LEU475 SER476 LYS477 THR478 ILE479 SER480 MET481 PHE482 LYS483 ASP484 GLY485 SER486 GLY487 SER488 TRP489 GLY490 ILE491 PRO492 TYR493 GLU494 ILE495 LYS496 GLN497 GLY498 LYS499 GLN500 ARG501 ARG502 VAL525 LEU526 TYR527 GLY528 TYR529 ALA530 ARG531 ASN532 THR533 LEU534 GLU535 ASN536 ARG537 LEU538 LYS539 ALA540 LYS541 CYS542 CYS543 GLU544 LEU545 CYS546 GLY547 THR548 SER549 ASP550 GLU551 ASN552 THR553 SER554 TYR555 GLU556 ILE557 HIS558 HIS559 VAL560 ASN561 ARG581 LYS582 THR583 LEU584 VAL585 VAL586 CYS587 PHE588 HIS589 CYS590 HIS591 ARG592
Nucleic acids
Unit 1 G1 U2 G3 C4 G5 C6 C7 C8 A9 G10 A11 U12 A13 G14 G15 G16 U17 G18 U19 U20 A21 A22 G23 U24 C25 A26 A27 G28 U29 A30 G31 U32 U33 U34 A35 A36 G37 G38 U39 A40 C41 U42 A43 C44 U45 C46 U47 G48 U49 A50 A51 G52 A53 U54 A55 A56 C57 A58 C59 A60 G61 A62 A63 A64 A65 C66 A67 G68 C69 C70 A71 A72 C73 C74 U75 A76 A77 C78 C79 G80 A81 A82 A83 A84 G85 C86 G87 A88 A89 A90 G91 C92 U93 G94 A95 U96 A97 C98 G99 G100 G101 A102 A103 C104 A105 G106 A107 G108 C109 A110 C111 G112 G113 U114 U115 G116 G117 A118 A119 A120 G121 C122 G123 A124 U125 G126 A127 G128 U129 U130 A131 C132 C133 U134 A135 A136 A137 G138 A139 C140 A141 A142 U143 C144 G145 G146 G147 U148 A149 C150 G151 A152 C153 U154 G155 A156 G157 U158 C159 G160 C161 A162 A163 U164 G165 U166 U167 A168 A169 U170 C171 A172 G173 A174 U175 A176 U177 A178 A179 G180 G181 U182 A183 U184 A185 A186 G187 U188 U189 G190 U191 G192 U193 U194 U195 A196 C197 U198 G199 A200 A201 C202 G203 C204 A205 A206 G207 U208 U209 U210 C211 U212 A213 A214 U215 U216 U217 C218 G219 G220 U221 U222 A223 U224 G225 U226 G227 U228 C229 G230 A231 U232 A233 G234 A235 G236 G237 A238 A239 A240 G241 U242 G243 U244 C245 U246 G247 A248 A249 A250 C251 C252 U253 C254 U255 A256 G257 U258 A259 C260 A261 A262 A263 G264 A265 A266 A267 G268 G269 U270 A271 A272 G273 U274 U275 A276 U277 G278 G279 U280 U281 G282 U283 G284 G285 A286 C287 U288 U289 A290 U291 C292 U293 G294 U295 U296 A297 U298 C299 A300 C301 C302 A303 C304 A305 U306 U307 U308 G309 U310 A311 C312 A313 A314 U315 C316 U317 G318 U319 A320 G321 G322 A323 G324 A325 A326 C327 C328 U329 A330 U331 G332 G333 G334 A335 A336 C337 G338 A339 A340 A341 C342 G343 A344 A345 A346 G347 C348 G349 A350 U351 G352 C353 C354 G355 A356 G357 A358 A359 U360 C361 U362 G363 A364 A365 U366 U367 U368 A369 C370 C371 A372 A373 G374 A375 C376 U377 U378 A379 A380 C381 A382 C383 U384 A385 A386 C387 U388 G389 G390 G391 G392 A393 U394 A395 C396 C397 C398 U399 A400 A401 A402 C403 A404 A405 G406 A407 A408 U409 G410 C411 C412 U413 A414 A420 A421 G422 G423 A424 G425 G426 A427 A428 A429 A430 A431 G432 G433 C434 U435 A436 U437 A438 G439 C440 A441 C442 U443 A444 G445 A446 G447 C448 U449 U450 G451 A452 A453 A454 A455 U456 C457 U458 U459 G460 C461 A462 A463 G464 G465 G466 U467 A468 C469 G470 G471 A472 G473 U474 A475 C476 U477 C478 G479 U480 A481 G482 U483 A484 G485 U486 C487 U488 G489 A490 G491 A492 A493 G494 G495 G496 U497 A498 A499 C500 G501 C502 C503 C504 U505 U506 U507 A508 C509 A510 U511 G512 G513 C514 A515 A516 A517 G518 G519 G520 G521 U522 A523 C524 A525 G526 U527 U528 A529 U530 U531 G532 U533 G534 U535 A536 C537 U538 A539 A540 A541 A542 U543 U544 A545 A546 A547 A548 A549 U550 U551 G552 A553 U554 U555 A556 G557 G558 G559 A560 G561 G562 A563 A564 A565 A566 C567 C568 U569 C570 A571 A572 A579 C580 C581 A582 A583 C584 A585 A586 U587 G588 G589 C590 A591 A592 U593 U594 U595 U596 A597 G598 A2388 C2389 A2390 A2391 U2392 A2393 A2394 C2395 A2396 G2397 A2398 G2399 C2400 C2401 G2402 U2403 A2404 U2405 A2406 C2407 U2408 C2409 C2410 G2411 A2412 G2413 A2414 G2415 G2416 G2417 G2418 U2419 A2420 C2421 G2422 U2423 A2424 C2425 G2426 G2427 U2428 U2429 C2430 C2431 C2432 G2433 A2434 A2435 G2436 A2437 G2438 G2439 G2440 U2441 G2442 G2443 U2444 G2445 C2446 A2447 A2448 A2449 C2450 C2451 A2452 G2453 U2454 C2455 A2456 C2457 A2458 G2459 U2460 A2461 A2462 U2463 G2464 U2465 G2466 A2467 A2468 C2469 A2470 A2471 G2472 G2473 C2474 G2475 G2476 U2477 A2478 C2479 C2480 U2481 C2482 C2483 C2484 U2485 A2486 C2487 U2488 U2489 C2490 A2491 C2492
Unit 2 C1 A2 C3 A4 U5 C6 C7 A8 U9 A10 A11 C12
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany