5FZ9 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN JARID1B I WITH MAYBRIDGE FRAGMENT THIENO(3,2-B)THIOPHENE-5-CARBOXYLIC (N06263B) (LIGAND MODELLED BASED ON PANDDA EVENT MAP, SGC - I04-1 FRAGMENT SCREENING)
• Keywords: OXIDOREDUCTASE, JARID1B, PLU1, FRAGMENT SCREENING, STRUCTURA GENOMICS CONSORTIUM, SGC, DIAMOND I04-1, PANDDA
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5FZ9	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	LYSINE-SPECIFIC DEMETHYLASE 5B	A	454	3666	0
2	Ligand	LYSINE-SPECIFIC DEMETHYLASE 5B	A	17	0	89
3	Water			230	0	230
total				701	3666	319

Proteins

Unit 1

SER -1 MET 0 PHE 26 LEU 27 PRO 28 PRO 29 PRO 30 GLU 31 CYS 32 PRO 33 VAL 34 PHE 35 GLU 36 PRO 37 SER 38 TRP 39 GLU 40 GLU 41 PHE 42 ALA 43 ASP 44 PRO 45 PHE 46 ALA 47 PHE 48 ILE 49 HIS 50 LYS 51 ILE 52 ARG 53 PRO 54 ILE 55 ALA 56 GLU 57 GLN 58 THR 59 GLY 60 ILE 61 CYS 62 LYS 63 VAL 64 ARG 65 PRO 66 PRO 67 PRO 68 ASP 69 TRP 70 GLN 71 PRO 72 PRO 73 PHE 74 ALA 75 CYS 76 ASP 77 VAL 78 ASP 79 LYS 80 LEU 81 HIS 82 PHE 83 THR 84 PRO 85 ARG 86 ILE 87 GLN 88 ARG 89 LEU 90 ASN 91 GLU 92 LEU 93 GLU 94 ALA 95 GLN 96 THR 97 ARG 98 VAL 99 LYS 100 ARG 375 ASP 376 TYR 377 THR 378 LEU 379 ARG 380 THR 381 PHE 382 GLY 383 GLU 384 MET 385 ALA 386 ASP 387 ALA 388 PHE 389 LYS 390 SER 391 ASP 392 TYR 393 PHE 394 ASN 395 MET 396 PRO 397 VAL 398 HIS 399 MET 400 VAL 401 PRO 402 THR 403 GLU 404 LEU 405 VAL 406 GLU 407 LYS 408 GLU 409 PHE 410 TRP 411 ARG 412 LEU 413 VAL 414 SER 415 THR 416 ILE 417 GLU 418 GLU 419 ASP 420 VAL 421 THR 422 VAL 423 GLU 424 TYR 425 GLY 426 ALA 427 ASP 428 ILE 429 ALA 430 SER 431 LYS 432 GLU 433 PHE 434 GLY 435 SER 436 GLY 437 PHE 438 PRO 439 VAL 440 ARG 441 ASP 442 ILE 445 LYS 446 LEU 447 SER 448 PRO 449 GLU 450 GLU 451 GLU 452 GLU 453 TYR 454 LEU 455 ASP 456 SER 457 GLY 458 TRP 459 ASN 460 LEU 461 ASN 462 ASN 463 MET 464 PRO 465 VAL 466 MET 467 GLU 468 GLN 469 SER 470 VAL 471 LEU 472 ALA 473 HIS 474 ILE 475 THR 476 ALA 477 ASP 478 ILE 479 CYS 480 GLY 481 MET 482 LYS 483 LEU 484 PRO 485 TRP 486 LEU 487 TYR 488 VAL 489 GLY 490 MET 491 CYS 492 PHE 493 SER 494 SER 495 PHE 496 CYS 497 TRP 498 HIS 499 ILE 500 GLU 501 ASP 502 HIS 503 TRP 504 SER 505 TYR 506 SER 507 ILE 508 ASN 509 TYR 510 LEU 511 HIS 512 TRP 513 GLY 514 GLU 515 PRO 516 LYS 517 THR 518 TRP 519 TYR 520 GLY 521 VAL 522 PRO 523 GLY 524 TYR 525 ALA 526 ALA 527 GLU 528 GLN 529 LEU 530 GLU 531 ASN 532 VAL 533 MET 534 LYS 535 LYS 536 LEU 537 ALA 538 PRO 539 GLU 540 LEU 541 PHE 542 VAL 543 SER 544 GLN 545 PRO 546 ASP 547 LEU 548 LEU 549 HIS 550 GLN 551 LEU 552 VAL 553 THR 554 ILE 555 MET 556 ASN 557 PRO 558 ASN 559 THR 560 LEU 561 MET 562 THR 563 HIS 564 GLU 565 VAL 566 PRO 567 VAL 568 TYR 569 ARG 570 THR 571 ASN 572 GLN 573 CYS 574 ALA 575 GLY 576 GLU 577 PHE 578 VAL 579 ILE 580 THR 581 PHE 582 PRO 583 ARG 584 ALA 585 TYR 586 HIS 587 SER 588 GLY 589 PHE 590 ASN 591 GLN 592 GLY 593 PHE 594 ASN 595 PHE 596 ALA 597 GLU 598 ALA 599 VAL 600 ASN 601 PHE 602 CYS 603 THR 604 VAL 605 ASP 606 TRP 607 LEU 608 PRO 609 LEU 610 GLY 611 ARG 612 GLN 613 CYS 614 VAL 615 GLU 616 HIS 617 TYR 618 ARG 619 LEU 620 LEU 621 HIS 622 ARG 623 TYR 624 CYS 625 VAL 626 PHE 627 SER 628 HIS 629 ASP 630 GLU 631 MET 632 ILE 633 CYS 634 LYS 635 MET 636 ALA 637 SER 638 LYS 639 ALA 640 ASP 641 VAL 642 LEU 643 ASP 644 VAL 645 VAL 646 VAL 647 ALA 648 SER 649 THR 650 VAL 651 GLN 652 LYS 653 ASP 654 MET 655 ALA 656 ILE 657 MET 658 ILE 659 GLU 660 ASP 661 GLU 662 LYS 663 ALA 664 LEU 665 ARG 666 GLU 667 THR 668 VAL 669 ARG 670 LYS 671 LEU 672 GLY 673 VAL 674 ILE 675 ASP 676 SER 677 GLU 678 ARG 679 MET 680 ASP 681 PHE 682 GLU 683 LEU 684 LEU 685 PRO 686 ASP 687 ASP 688 GLU 689 ARG 690 GLN 691 CYS 692 VAL 693 LYS 694 CYS 695 LYS 696 THR 697 THR 698 CYS 699 PHE 700 MET 701 SER 702 ALA 703 ILE 704 SER 705 CYS 706 SER 707 CYS 708 LYS 709 PRO 710 GLY 711 LEU 712 LEU 713 VAL 714 CYS 715 LEU 716 HIS 717 HIS 718 VAL 719 LYS 720 GLU 721 LEU 722 CYS 723 SER 724 CYS 725 PRO 726 PRO 727 TYR 728 LYS 729 TYR 730 LYS 731 LEU 732 ARG 733 TYR 734 ARG 735 TYR 736 THR 737 LEU 738 ASP 739 ASP 740 LEU 741 TYR 742 PRO 743 MET 744 MET 745 ASN 746 ALA 747 LEU 748 LYS 749 LEU 750 ARG 751 ALA 752 GLU 753

Ligands

Unit 2

ZN 1754 ZN 1755 DMS 1756 DMS 1757 DMS 1758 MN 1759 EPE 1760 EDO 1761 EDO 1762 EDO 1763 EDO 1764 EDO 1765 CL 1766 NUK 1767 NUK 1768 NUK 1769 PO4 1770