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| Title | CRYSTAL STRUCTURE OF JMJC DOMAIN OF HUMAN HISTONE DEMETHYLAS COMPLEX WITH SUCCINATE | |
| Keywords | TRANSFERASE, TCA INTERMEDIATE | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 5FY7 | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | HISTONE DEMETHYLASE UTY | A | 446 | 3534 | 0 |
| 2 | Protein | HISTONE DEMETHYLASE UTY | B | 446 | 3550 | 0 |
| 3 | Ligand | HISTONE DEMETHYLASE UTY | A | 10 | 0 | 38 |
| 4 | Ligand | HISTONE DEMETHYLASE UTY | B | 12 | 0 | 46 |
| 5 | Water | 745 | 0 | 745 | ||
| total | 1659 | 7084 | 829 |
| Unit 1 | LYS801 ASP802 LYS803 LEU804 ASN805 PRO806 PRO807 THR808 PRO809 SER810 ILE811 TYR812 LEU813 GLU814 ASN815 LYS816 ARG817 ASP818 ALA819 PHE820 PHE821 PRO822 PRO823 LEU824 HIS825 GLN826 PHE827 CYS828 THR829 ASN830 PRO831 LYS832 ASN833 PRO834 VAL835 THR836 VAL837 ILE838 ARG839 GLY840 LEU841 ALA842 GLY843 ALA844 LEU845 LYS846 LEU847 ASP848 LEU849 GLY850 LEU851 PHE852 SER853 THR854 LYS855 THR856 LEU857 VAL858 GLU859 ALA860 ASN861 ASN862 GLU863 HIS864 MET865 VAL866 GLU867 VAL868 ARG869 THR870 GLN871 LEU872 LEU873 GLN874 PRO875 ALA876 ASP877 GLU878 ASN879 TRP880 ASP881 PRO882 THR883 GLY884 THR885 LYS886 LYS887 ILE888 TRP889 ARG890 CYS891 GLU892 SER893 ASN894 ARG895 SER896 HIS897 THR898 THR899 ILE900 ALA901 LYS902 TYR903 ALA904 GLN905 TYR906 GLN907 ALA908 SER909 SER910 PHE911 GLN912 GLU913 SER914 LEU915 ARG916 GLU917 GLU918 ASN919 GLU920 LYS921 ARG922 ARG942 ARG943 LYS944 GLY945 PRO946 PHE947 LYS948 THR949 ILE950 LYS951 PHE952 GLY953 THR954 ASN955 ILE956 ASP957 LEU958 SER959 ASP960 ASN961 LYS962 LYS963 TRP964 LYS965 LEU966 GLN967 LEU968 HIS969 GLU970 LEU971 THR972 LYS973 LEU974 PRO975 ALA976 PHE977 ALA978 ARG979 VAL980 VAL981 SER982 ALA983 GLY984 ASN985 LEU986 LEU987 THR988 HIS989 VAL990 GLY991 HIS992 THR993 ILE994 LEU995 GLY996 MET997 ASN998 THR999 VAL1000 GLN1001 LEU1002 TYR1003 MET1004 LYS1005 VAL1006 PRO1007 GLY1008 SER1009 ARG1010 THR1011 PRO1012 GLY1013 HIS1014 GLN1015 GLU1016 ASN1017 ASN1018 ASN1019 PHE1020 CYS1021 SER1022 VAL1023 ASN1024 ILE1025 ASN1026 ILE1027 GLY1028 PRO1029 GLY1030 ASP1031 CYS1032 GLU1033 TRP1034 PHE1035 VAL1036 VAL1037 PRO1038 GLU1039 ASP1040 TYR1041 TRP1042 GLY1043 VAL1044 LEU1045 ASN1046 ASP1047 PHE1048 CYS1049 GLU1050 LYS1051 ASN1052 ASN1053 LEU1054 ASN1055 PHE1056 LEU1057 MET1058 SER1059 SER1060 TRP1061 TRP1062 PRO1063 ASN1064 LEU1065 GLU1066 ASP1067 LEU1068 TYR1069 GLU1070 ALA1071 ASN1072 VAL1073 PRO1074 VAL1075 TYR1076 ARG1077 PHE1078 ILE1079 GLN1080 ARG1081 PRO1082 GLY1083 ASP1084 LEU1085 VAL1086 TRP1087 ILE1088 ASN1089 ALA1090 GLY1091 THR1092 VAL1093 HIS1094 TRP1095 VAL1096 GLN1097 ALA1098 VAL1099 GLY1100 TRP1101 CYS1102 ASN1103 ASN1104 ILE1105 ALA1106 TRP1107 ASN1108 VAL1109 GLY1110 PRO1111 LEU1112 THR1113 ALA1114 CYS1115 GLN1116 TYR1117 LYS1118 LEU1119 ALA1120 VAL1121 GLU1122 ARG1123 TYR1124 GLU1125 TRP1126 ASN1127 LYS1128 LEU1129 LYS1130 SER1131 VAL1132 LYS1133 SER1134 PRO1135 VAL1136 PRO1137 MET1138 VAL1139 HIS1140 LEU1141 SER1142 TRP1143 ASN1144 MET1145 ALA1146 ARG1147 ASN1148 ILE1149 LYS1150 VAL1151 SER1152 ASP1153 PRO1154 LYS1155 LEU1156 PHE1157 GLU1158 MET1159 ILE1160 LYS1161 TYR1162 CYS1163 LEU1164 LEU1165 LYS1166 ILE1167 LEU1168 LYS1169 GLN1170 TYR1171 GLN1172 THR1173 LEU1174 ARG1175 GLU1176 ALA1177 LEU1178 VAL1179 ALA1180 ALA1181 GLY1182 LYS1183 GLU1184 VAL1185 ILE1186 TRP1187 HIS1188 GLY1189 ARG1190 THR1191 ASN1192 ASP1193 GLU1194 PRO1195 ALA1196 HIS1197 TYR1198 CYS1199 SER1200 ILE1201 CYS1202 GLU1203 VAL1204 GLU1205 VAL1206 PHE1207 ASN1208 LEU1209 LEU1210 PHE1211 VAL1212 THR1213 ASN1214 GLU1215 SER1216 ASN1217 THR1218 GLN1219 LYS1220 THR1221 TYR1222 ILE1223 VAL1224 HIS1225 CYS1226 HIS1227 ASP1228 CYS1229 ALA1230 ARG1231 LYS1232 THR1233 SER1234 LYS1235 SER1236 LEU1237 GLU1238 ASN1239 PHE1240 VAL1241 VAL1242 LEU1243 GLU1244 GLN1245 TYR1246 LYS1247 MET1248 GLU1249 ASP1250 LEU1251 ILE1252 GLN1253 VAL1254 TYR1255 ASP1256 GLN1257 PHE1258 THR1259 LEU1260 ALA1261 LEU1262 SER1263 LEU1264 SER1265 |
| Unit 2 | ASP802 LYS803 LEU804 ASN805 PRO806 PRO807 THR808 PRO809 SER810 ILE811 TYR812 LEU813 GLU814 ASN815 LYS816 ARG817 ASP818 ALA819 PHE820 PHE821 PRO822 PRO823 LEU824 HIS825 GLN826 PHE827 CYS828 THR829 ASN830 PRO831 LYS832 ASN833 PRO834 VAL835 THR836 VAL837 ILE838 ARG839 GLY840 LEU841 ALA842 GLY843 ALA844 LEU845 LYS846 LEU847 ASP848 LEU849 GLY850 LEU851 PHE852 SER853 THR854 LYS855 THR856 LEU857 VAL858 GLU859 ALA860 ASN861 ASN862 GLU863 HIS864 MET865 VAL866 GLU867 VAL868 ARG869 THR870 GLN871 LEU872 LEU873 GLN874 PRO875 ALA876 ASP877 GLU878 ASN879 TRP880 ASP881 PRO882 THR883 GLY884 THR885 LYS886 LYS887 ILE888 TRP889 ARG890 CYS891 GLU892 SER893 ASN894 ARG895 SER896 HIS897 THR898 THR899 ILE900 ALA901 LYS902 TYR903 ALA904 GLN905 TYR906 GLN907 ALA908 SER909 SER910 PHE911 GLN912 GLU913 SER914 LEU915 ARG916 GLU917 GLU918 ASN919 GLU920 PRO946 PHE947 LYS948 THR949 ILE950 LYS951 PHE952 GLY953 THR954 ASN955 ILE956 ASP957 LEU958 SER959 ASP960 ASN961 LYS962 LYS963 TRP964 LYS965 LEU966 GLN967 LEU968 HIS969 GLU970 LEU971 THR972 LYS973 LEU974 PRO975 ALA976 PHE977 ALA978 ARG979 VAL980 VAL981 SER982 ALA983 GLY984 ASN985 LEU986 LEU987 THR988 HIS989 VAL990 GLY991 HIS992 THR993 ILE994 LEU995 GLY996 MET997 ASN998 THR999 VAL1000 GLN1001 LEU1002 TYR1003 MET1004 LYS1005 VAL1006 PRO1007 GLY1008 SER1009 ARG1010 THR1011 PRO1012 GLY1013 HIS1014 GLN1015 GLU1016 ASN1017 ASN1018 ASN1019 PHE1020 CYS1021 SER1022 VAL1023 ASN1024 ILE1025 ASN1026 ILE1027 GLY1028 PRO1029 GLY1030 ASP1031 CYS1032 GLU1033 TRP1034 PHE1035 VAL1036 VAL1037 PRO1038 GLU1039 ASP1040 TYR1041 TRP1042 GLY1043 VAL1044 LEU1045 ASN1046 ASP1047 PHE1048 CYS1049 GLU1050 LYS1051 ASN1052 ASN1053 LEU1054 ASN1055 PHE1056 LEU1057 MET1058 SER1059 SER1060 TRP1061 TRP1062 PRO1063 ASN1064 LEU1065 GLU1066 ASP1067 LEU1068 TYR1069 GLU1070 ALA1071 ASN1072 VAL1073 PRO1074 VAL1075 TYR1076 ARG1077 PHE1078 ILE1079 GLN1080 ARG1081 PRO1082 GLY1083 ASP1084 LEU1085 VAL1086 TRP1087 ILE1088 ASN1089 ALA1090 GLY1091 THR1092 VAL1093 HIS1094 TRP1095 VAL1096 GLN1097 ALA1098 VAL1099 GLY1100 TRP1101 CYS1102 ASN1103 ASN1104 ILE1105 ALA1106 TRP1107 ASN1108 VAL1109 GLY1110 PRO1111 LEU1112 THR1113 ALA1114 CYS1115 GLN1116 TYR1117 LYS1118 LEU1119 ALA1120 VAL1121 GLU1122 ARG1123 TYR1124 GLU1125 TRP1126 ASN1127 LYS1128 LEU1129 LYS1130 SER1131 VAL1132 LYS1133 SER1134 PRO1135 VAL1136 PRO1137 MET1138 VAL1139 HIS1140 LEU1141 SER1142 TRP1143 ASN1144 MET1145 ALA1146 ARG1147 ASN1148 ILE1149 LYS1150 VAL1151 SER1152 ASP1153 PRO1154 LYS1155 LEU1156 PHE1157 GLU1158 MET1159 ILE1160 LYS1161 TYR1162 CYS1163 LEU1164 LEU1165 LYS1166 ILE1167 LEU1168 LYS1169 GLN1170 TYR1171 GLN1172 THR1173 LEU1174 ARG1175 GLU1176 ALA1177 LEU1178 VAL1179 ALA1180 ALA1181 GLY1182 LYS1183 GLU1184 VAL1185 ILE1186 TRP1187 HIS1188 GLY1189 ARG1190 THR1191 ASN1192 ASP1193 GLU1194 PRO1195 ALA1196 HIS1197 TYR1198 CYS1199 SER1200 ILE1201 CYS1202 GLU1203 VAL1204 GLU1205 VAL1206 PHE1207 ASN1208 LEU1209 LEU1210 PHE1211 VAL1212 THR1213 ASN1214 GLU1215 SER1216 ASN1217 THR1218 GLN1219 LYS1220 THR1221 TYR1222 ILE1223 VAL1224 HIS1225 CYS1226 HIS1227 ASP1228 CYS1229 ALA1230 ARG1231 LYS1232 THR1233 SER1234 LYS1235 SER1236 LEU1237 GLU1238 ASN1239 PHE1240 VAL1241 VAL1242 LEU1243 GLU1244 GLN1245 TYR1246 LYS1247 MET1248 GLU1249 ASP1250 LEU1251 ILE1252 GLN1253 VAL1254 TYR1255 ASP1256 GLN1257 PHE1258 THR1259 LEU1260 ALA1261 LEU1262 SER1263 LEU1264 SER1265 SER1266 SER1267 SER1268 ALA1269 GLU1270 ASN1271 LEU1272 |
| Unit 3 | MN2266 SIN2267 EDO2268 EDO2269 EDO2270 EDO2271 EDO2272 EDO2273 EDO2274 ZN4002 |
| Unit 4 | MN2273 SIN2274 EDO2275 EDO2276 EDO2277 EDO2278 EDO2279 EDO2280 EDO2281 EDO2282 EDO2283 ZN4002 |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |