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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HELICOBACTER PYLORI BETA CLAMP BOUND TO LIGASE PEPTIDE
Keywords TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5FRQ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA POLYMERASE III SUBUNIT BETA  A 358 2837 0
2  Protein   DNA POLYMERASE III SUBUNIT BETA  B 364 2882 0
3  Protein   DNA POLYMERASE III SUBUNIT BETA  C 358 2840 0
4  Protein   DNA POLYMERASE III SUBUNIT BETA  D 357 2828 0
5  Protein   DNA LIGASE  G 6 55 0
6  Protein   DNA LIGASE  L 6 55 0
7 Water     10 0 10
total       1459 11497 10
Proteins
Unit 1 MET1 LYS2 ILE3 SER4 VAL5 SER6 LYS7 ASN8 ASP9 LEU10 GLU11 ASN12 ALA13 LEU14 ARG15 TYR16 LEU17 GLN18 ALA19 PHE20 LEU21 ASP22 LYS23 LYS24 ASP25 ALA26 SER27 SER28 ILE29 ALA30 SER31 HIS32 ILE33 HIS34 LEU35 GLU36 VAL37 ILE38 LYS39 GLU40 LYS41 LEU42 PHE43 LEU44 LYS45 ALA46 SER47 ASP48 SER49 ASP50 ILE51 GLY52 LEU53 LYS54 SER55 TYR56 ILE57 PHE58 THR59 GLN60 SER61 SER62 ASP63 LYS64 GLU65 GLY66 VAL67 GLY68 THR69 ILE70 ASN71 GLY72 LYS73 LYS74 PHE75 LEU76 ASP77 ILE78 ILE79 SER80 CYS81 LEU82 LYS83 ASP84 SER85 ASN86 ILE87 ILE88 LEU89 GLU90 THR91 LYS92 ASP93 ASP94 SER95 LEU96 ALA97 ILE98 LYS99 GLN100 ASN101 LYS102 SER103 SER104 PHE105 LYS106 LEU107 PRO108 MET109 PHE110 ASP111 ALA112 ASP113 GLU114 PHE115 PRO116 GLU117 PHE118 PRO119 VAL120 ILE121 ASP122 PRO123 LYS124 VAL125 SER126 ILE127 GLU128 VAL129 ASN130 ALA131 PRO132 PHE133 LEU134 VAL135 ASP136 ALA137 PHE138 LYS139 LYS140 ILE141 ALA142 PRO143 VAL144 ILE145 GLU146 GLN147 THR148 SER149 HIS150 LYS151 ARG152 GLU153 LEU154 ALA155 GLY156 ILE157 LEU158 MET159 GLN160 PHE161 ASP162 GLN163 LYS164 HIS165 GLN166 THR167 LEU168 SER169 VAL170 VAL171 GLY172 THR173 ASP174 THR175 LYS176 ARG177 LEU178 SER179 TYR180 THR181 GLN182 LEU183 GLU184 LYS185 ILE186 SER187 ILE188 HIS189 SER190 THR191 GLU192 GLU193 ASP194 ILE195 SER196 CYS197 ILE198 LEU199 PRO200 LYS201 ARG202 ALA203 LEU204 LEU205 GLU206 ILE207 LEU208 LYS209 LEU210 PHE211 TYR212 GLU213 ASN214 PHE215 SER216 PHE217 LYS218 SER219 ASP220 GLY221 MET222 LEU223 ALA224 VAL225 ILE226 GLU227 ASN228 GLU229 MET230 HIS231 THR232 PHE233 PHE234 THR235 LYS236 LEU237 ILE238 ASP239 GLY240 ASN241 TYR242 PRO243 ASP244 TYR245 GLN246 LYS247 ILE248 LEU249 PRO250 LYS251 GLU252 TYR253 ILE254 SER255 SER256 PHE257 THR258 LEU259 GLY260 LYS261 GLU262 GLU263 PHE264 LYS265 GLU266 SER267 ILE268 LYS269 LEU270 CYS271 SER272 SER273 LEU274 SER275 SER276 THR277 ILE278 LYS279 LEU280 THR281 LEU282 GLU283 LYS284 ASN285 ASN286 ALA287 LEU288 PHE289 GLU290 SER291 LEU292 SER297 GLU298 THR299 ALA300 LYS301 THR302 SER303 VAL304 GLU305 ILE306 GLU307 LYS308 GLY309 LEU310 ASP311 ILE312 GLU313 ALA315 PHE316 HIS317 LEU318 GLY319 VAL320 ASN321 ALA322 LYS323 PHE324 PHE325 LEU326 GLU327 ALA328 LEU329 ASN330 ALA331 LEU332 GLY333 THR334 THR335 GLN336 PHE337 VAL338 LEU339 ARG340 CYS341 ASN342 GLU343 PRO344 SER345 SER346 PRO347 PHE348 LEU349 ILE350 GLN351 GLU352 SER353 LYS364 ILE365 SER366 THR367 LEU368 MET369 MET370 PRO371 ILE372 THR373
Unit 2 MET1 LYS2 ILE3 SER4 VAL5 SER6 LYS7 ASN8 ASP9 LEU10 GLU11 ASN12 ALA13 LEU14 ARG15 TYR16 LEU17 GLN18 ALA19 PHE20 LEU21 ASP22 LYS23 LYS24 ASP25 ALA26 SER27 SER28 ILE29 ALA30 SER31 HIS32 ILE33 HIS34 LEU35 GLU36 VAL37 ILE38 LYS39 GLU40 LYS41 LEU42 PHE43 LEU44 LYS45 ALA46 SER47 ASP48 SER49 ASP50 ILE51 GLY52 LEU53 LYS54 SER55 TYR56 ILE57 PHE58 THR59 GLN60 SER61 SER62 ASP63 LYS64 GLU65 GLY66 VAL67 GLY68 THR69 ILE70 ASN71 GLY72 LYS73 LYS74 PHE75 LEU76 ASP77 ILE78 ILE79 SER80 CYS81 LEU82 LYS83 ASP84 SER85 ASN86 ILE87 ILE88 LEU89 GLU90 THR91 LYS92 ASP93 ASP94 SER95 LEU96 ALA97 ILE98 LYS99 GLN100 ASN101 LYS102 SER103 SER104 PHE105 LYS106 LEU107 PRO108 MET109 PHE110 ASP111 ALA112 ASP113 GLU114 PHE115 PRO116 GLU117 PHE118 PRO119 VAL120 ILE121 ASP122 PRO123 LYS124 VAL125 SER126 ILE127 GLU128 VAL129 ASN130 ALA131 PRO132 PHE133 LEU134 VAL135 ASP136 ALA137 PHE138 LYS139 LYS140 ILE141 ALA142 PRO143 VAL144 ILE145 GLU146 GLN147 THR148 SER149 HIS150 LYS151 ARG152 GLU153 LEU154 ALA155 GLY156 ILE157 LEU158 MET159 GLN160 PHE161 ASP162 GLN163 LYS164 HIS165 GLN166 THR167 LEU168 SER169 VAL170 VAL171 GLY172 THR173 ASP174 THR175 LYS176 ARG177 LEU178 SER179 TYR180 THR181 GLN182 LEU183 GLU184 LYS185 ILE186 SER187 ILE188 HIS189 SER190 THR191 GLU192 GLU193 ASP194 ILE195 SER196 CYS197 ILE198 LEU199 PRO200 LYS201 ARG202 ALA203 LEU204 LEU205 GLU206 ILE207 LEU208 LYS209 LEU210 PHE211 TYR212 GLU213 ASN214 PHE215 SER216 PHE217 LYS218 SER219 ASP220 GLY221 MET222 LEU223 ALA224 VAL225 ILE226 GLU227 ASN228 GLU229 MET230 HIS231 THR232 PHE233 PHE234 THR235 LYS236 LEU237 ILE238 ASP239 GLY240 ASN241 TYR242 PRO243 ASP244 TYR245 GLN246 LYS247 ILE248 LEU249 PRO250 LYS251 GLU252 TYR253 ILE254 SER255 SER256 PHE257 THR258 LEU259 GLY260 LYS261 GLU262 GLU263 PHE264 LYS265 GLU266 SER267 ILE268 LYS269 LEU270 CYS271 SER272 SER273 LEU274 SER275 SER276 THR277 ILE278 LYS279 LEU280 THR281 LEU282 GLU283 LYS284 ASN285 ASN286 ALA287 LEU288 PHE289 GLU290 SER291 LEU292 ASP293 SER294 GLU295 HIS296 SER297 GLU298 THR299 ALA300 LYS301 THR302 SER303 VAL304 GLU305 ILE306 GLU307 LYS308 GLY309 LEU310 ASP311 ILE312 GLU313 ALA315 PHE316 HIS317 LEU318 GLY319 VAL320 ASN321 ALA322 LYS323 PHE324 PHE325 LEU326 GLU327 ALA328 LEU329 ASN330 ALA331 LEU332 GLY333 THR334 THR335 GLN336 PHE337 VAL338 LEU339 ARG340 CYS341 ASN342 GLU343 PRO344 SER345 SER346 PRO347 PHE348 LEU349 ILE350 GLN351 GLU352 SER353 LEU354 LYS364 ILE365 SER366 THR367 LEU368 MET369 MET370 PRO371 ILE372 THR373 LEU374
Unit 3 MET1 LYS2 ILE3 SER4 VAL5 SER6 LYS7 ASN8 ASP9 LEU10 GLU11 ASN12 ALA13 LEU14 ARG15 TYR16 LEU17 GLN18 ALA19 PHE20 LEU21 ASP22 LYS23 LYS24 ASP25 ALA26 SER27 SER28 ILE29 ALA30 SER31 HIS32 ILE33 HIS34 LEU35 GLU36 VAL37 ILE38 LYS39 GLU40 LYS41 LEU42 PHE43 LEU44 LYS45 ALA46 SER47 ASP48 SER49 ASP50 ILE51 GLY52 LEU53 LYS54 SER55 TYR56 ILE57 PHE58 THR59 GLN60 SER61 SER62 ASP63 LYS64 GLU65 GLY66 VAL67 GLY68 THR69 ILE70 ASN71 GLY72 LYS73 LYS74 PHE75 LEU76 ASP77 ILE78 ILE79 SER80 CYS81 LEU82 LYS83 ASP84 SER85 ASN86 ILE87 ILE88 LEU89 GLU90 THR91 LYS92 ASP93 ASP94 SER95 LEU96 ALA97 ILE98 LYS99 GLN100 ASN101 LYS102 SER103 SER104 PHE105 LYS106 LEU107 PRO108 MET109 PHE110 ASP111 ALA112 ASP113 GLU114 PHE115 PRO116 GLU117 PHE118 PRO119 VAL120 ILE121 ASP122 PRO123 LYS124 VAL125 SER126 ILE127 GLU128 VAL129 ASN130 ALA131 PRO132 PHE133 LEU134 VAL135 ASP136 ALA137 PHE138 LYS139 LYS140 ILE141 ALA142 PRO143 VAL144 ILE145 GLU146 GLN147 THR148 SER149 HIS150 LYS151 ARG152 GLU153 LEU154 ALA155 GLY156 ILE157 LEU158 MET159 GLN160 PHE161 ASP162 GLN163 LYS164 HIS165 GLN166 THR167 LEU168 SER169 VAL170 VAL171 GLY172 THR173 ASP174 THR175 LYS176 ARG177 LEU178 SER179 TYR180 THR181 GLN182 LEU183 GLU184 LYS185 ILE186 SER187 ILE188 HIS189 SER190 THR191 GLU192 GLU193 ASP194 ILE195 SER196 CYS197 ILE198 LEU199 PRO200 LYS201 ARG202 ALA203 LEU204 LEU205 GLU206 ILE207 LEU208 LYS209 LEU210 PHE211 TYR212 GLU213 ASN214 PHE215 SER216 PHE217 LYS218 SER219 ASP220 GLY221 MET222 LEU223 ALA224 VAL225 ILE226 GLU227 ASN228 GLU229 MET230 HIS231 THR232 PHE233 PHE234 THR235 LYS236 LEU237 ILE238 ASP239 GLY240 ASN241 TYR242 PRO243 ASP244 TYR245 GLN246 LYS247 ILE248 LEU249 PRO250 LYS251 GLU252 TYR253 ILE254 SER255 SER256 PHE257 THR258 LEU259 GLY260 LYS261 GLU262 GLU263 PHE264 LYS265 GLU266 SER267 ILE268 LYS269 LEU270 CYS271 SER272 SER273 LEU274 SER275 SER276 THR277 ILE278 LYS279 LEU280 THR281 LEU282 GLU283 LYS284 ASN285 ASN286 ALA287 LEU288 PHE289 GLU290 SER291 LEU292 GLU298 THR299 ALA300 LYS301 THR302 SER303 VAL304 GLU305 ILE306 GLU307 LYS308 GLY309 LEU310 ASP311 ILE312 GLU313 LYS314 ALA315 PHE316 HIS317 LEU318 GLY319 VAL320 ASN321 ALA322 LYS323 PHE324 PHE325 LEU326 GLU327 ALA328 LEU329 ASN330 ALA331 LEU332 GLY333 THR334 THR335 GLN336 PHE337 VAL338 LEU339 ARG340 CYS341 ASN342 GLU343 PRO344 SER345 SER346 PRO347 PHE348 LEU349 ILE350 GLN351 GLU352 SER353 LYS364 ILE365 SER366 THR367 LEU368 MET369 MET370 PRO371 ILE372 THR373
Unit 4 MET1 LYS2 ILE3 SER4 VAL5 SER6 LYS7 ASN8 ASP9 LEU10 GLU11 ASN12 ALA13 LEU14 ARG15 TYR16 LEU17 GLN18 ALA19 PHE20 LEU21 ASP22 ASP25 ALA26 SER27 SER28 ILE29 ALA30 SER31 HIS32 ILE33 HIS34 LEU35 GLU36 VAL37 ILE38 LYS39 GLU40 LYS41 LEU42 PHE43 LEU44 LYS45 ALA46 SER47 ASP48 SER49 ASP50 ILE51 GLY52 LEU53 LYS54 SER55 TYR56 ILE57 PHE58 THR59 GLN60 SER61 SER62 ASP63 LYS64 GLU65 GLY66 VAL67 GLY68 THR69 ILE70 ASN71 GLY72 LYS73 LYS74 PHE75 LEU76 ASP77 ILE78 ILE79 SER80 CYS81 LEU82 LYS83 ASP84 SER85 ASN86 ILE87 ILE88 LEU89 GLU90 THR91 LYS92 ASP93 ASP94 SER95 LEU96 ALA97 ILE98 LYS99 GLN100 ASN101 LYS102 SER103 SER104 PHE105 LYS106 LEU107 PRO108 MET109 PHE110 ASP111 ALA112 ASP113 GLU114 PHE115 PRO116 GLU117 PHE118 PRO119 VAL120 ILE121 ASP122 PRO123 LYS124 VAL125 SER126 ILE127 GLU128 VAL129 ASN130 ALA131 PRO132 PHE133 LEU134 VAL135 ASP136 ALA137 PHE138 LYS139 LYS140 ILE141 ALA142 PRO143 VAL144 ILE145 GLU146 GLN147 THR148 SER149 HIS150 LYS151 ARG152 GLU153 LEU154 ALA155 GLY156 ILE157 LEU158 MET159 GLN160 PHE161 ASP162 GLN163 LYS164 HIS165 GLN166 THR167 LEU168 SER169 VAL170 VAL171 GLY172 THR173 ASP174 THR175 LYS176 ARG177 LEU178 SER179 TYR180 THR181 GLN182 LEU183 GLU184 LYS185 ILE186 SER187 ILE188 HIS189 SER190 THR191 GLU192 GLU193 ASP194 ILE195 SER196 CYS197 ILE198 LEU199 PRO200 LYS201 ARG202 ALA203 LEU204 LEU205 GLU206 ILE207 LEU208 LYS209 LEU210 PHE211 TYR212 GLU213 ASN214 PHE215 SER216 PHE217 LYS218 SER219 ASP220 GLY221 MET222 LEU223 ALA224 VAL225 ILE226 GLU227 ASN228 GLU229 MET230 HIS231 THR232 PHE233 PHE234 THR235 LYS236 LEU237 ILE238 ASP239 GLY240 ASN241 TYR242 PRO243 ASP244 TYR245 GLN246 LYS247 ILE248 LEU249 PRO250 LYS251 GLU252 TYR253 ILE254 SER255 SER256 PHE257 THR258 LEU259 GLY260 LYS261 GLU262 GLU263 PHE264 LYS265 GLU266 SER267 ILE268 LYS269 LEU270 CYS271 SER272 SER273 LEU274 SER275 SER276 THR277 ILE278 LYS279 LEU280 THR281 LEU282 GLU283 LYS284 ASN285 ASN286 ALA287 LEU288 PHE289 GLU290 SER291 SER297 GLU298 THR299 ALA300 LYS301 THR302 SER303 VAL304 GLU305 ILE306 GLU307 LYS308 GLY309 LEU310 ASP311 ILE312 GLU313 LYS314 ALA315 PHE316 HIS317 LEU318 GLY319 VAL320 ASN321 ALA322 LYS323 PHE324 PHE325 LEU326 GLU327 ALA328 LEU329 ASN330 ALA331 LEU332 GLY333 THR334 THR335 GLN336 PHE337 VAL338 LEU339 ARG340 CYS341 ASN342 GLU343 PRO344 SER345 SER346 PRO347 PHE348 LEU349 ILE350 GLN351 GLU352 SER353 LYS364 ILE365 SER366 THR367 LEU368 MET369 MET370 PRO371 ILE372 THR373 LEU374
Unit 5 PHE370 ILE371 ARG372 SER373 LEU374 PHE375
Unit 6 PHE370 ILE371 ARG372 SER373 LEU374 PHE375
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany