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Sequence, Chains, Asymmetric and Biological Units

Title CRYO-EM STRUCTURE OF GAMMA SECRETASE IN CLASS 1 OF THE APO- ENSEMBLE
Keywords HYDROLASE
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5FN3     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NICASTRIN  A 665 5222 0
2  Protein   PRESENILIN-1  B 286 2234 0
3  Protein   GAMMA-SECRETASE SUBUNIT APH-1A  C 243 1868 0
4  Protein   GAMMA-SECRETASE SUBUNIT PEN-2  D 100 847 0
5  Protein   POLY ALA CHAIN  G 24 120 0
total       1318 10291 0
Proteins
Unit 1 ASN34 SER35 VAL36 GLU37 ARG38 LYS39 ILE40 TYR41 ILE42 PRO43 LEU44 ASN45 LYS46 THR47 ALA48 PRO49 CYS50 VAL51 ARG52 LEU53 LEU54 ASN55 ALA56 THR57 HIS58 GLN59 ILE60 GLY61 CYS62 GLN63 SER64 SER65 ILE66 SER67 GLY68 ASP69 THR70 GLY71 VAL72 ILE73 HIS74 VAL75 VAL76 GLU77 LYS78 GLU79 GLU80 ASP81 LEU82 GLN83 TRP84 VAL85 LEU86 THR87 ASP88 GLY89 PRO90 ASN91 PRO92 PRO93 TYR94 MET95 VAL96 LEU97 LEU98 GLU99 SER100 LYS101 HIS102 PHE103 THR104 ARG105 ASP106 LEU107 MET108 GLU109 LYS110 LEU111 LYS112 GLY113 ARG114 THR115 SER116 ARG117 ILE118 ALA119 GLY120 LEU121 ALA122 VAL123 SER124 LEU125 THR126 LYS127 PRO128 SER129 PRO130 ALA131 SER132 GLY133 PHE134 SER135 PRO136 SER137 VAL138 GLN139 CYS140 PRO141 ASN142 ASP143 GLY144 PHE145 GLY146 VAL147 TYR148 SER149 ASN150 SER151 TYR152 GLY153 PRO154 GLU155 PHE156 ALA157 HIS158 CYS159 ARG160 GLU161 ILE162 GLN163 TRP164 ASN165 SER166 LEU167 GLY168 ASN169 GLY170 LEU171 ALA172 TYR173 GLU174 ASP175 PHE176 SER177 PHE178 PRO179 ILE180 PHE181 LEU182 LEU183 GLU184 ASP185 GLU186 ASN187 GLU188 THR189 LYS190 VAL191 ILE192 LYS193 GLN194 CYS195 TYR196 GLN197 ASP198 HIS199 ASN200 LEU201 SER202 GLN203 ASN204 GLY205 SER206 ALA207 PRO208 THR209 PHE210 PRO211 LEU212 CYS213 ALA214 MET215 GLN216 LEU217 PHE218 SER219 HIS220 MET221 HIS222 ALA223 VAL224 ILE225 SER226 THR227 ALA228 THR229 CYS230 MET231 ARG232 ARG233 SER234 SER235 ILE236 GLN237 SER238 THR239 PHE240 SER241 ILE242 ASN243 PRO244 GLU245 ILE246 VAL247 CYS248 ASP249 PRO250 LEU251 SER252 ASP253 TYR254 ASN255 VAL256 TRP257 SER258 MET259 LEU260 LYS261 PRO262 ILE263 ASN264 THR265 THR266 GLY267 THR268 LEU269 LYS270 PRO271 ASP272 ASP273 ARG274 VAL275 VAL276 VAL277 ALA278 ALA279 THR280 ARG281 LEU282 ASP283 SER284 ARG285 SER286 PHE287 PHE288 TRP289 ASN290 VAL291 ALA292 PRO293 GLY294 ALA295 GLU296 SER297 ALA298 VAL299 ALA300 SER301 PHE302 VAL303 THR304 GLN305 LEU306 ALA307 ALA308 ALA309 GLU310 ALA311 LEU312 GLN313 LYS314 ALA315 PRO316 ASP317 VAL318 THR319 THR320 LEU321 PRO322 ARG323 ASN324 VAL325 MET326 PHE327 VAL328 PHE329 PHE330 GLN331 GLY332 GLU333 THR334 PHE335 ASP336 TYR337 ILE338 GLY339 SER340 SER341 ARG342 MET343 VAL344 TYR345 ASP346 MET347 GLU348 LYS349 GLY350 LYS351 PHE352 PRO353 VAL354 GLN355 LEU356 GLU357 ASN358 VAL359 ASP360 SER361 PHE362 VAL363 GLU364 LEU365 GLY366 GLN367 VAL368 ALA369 LEU370 ARG371 THR372 SER373 LEU374 GLU375 LEU376 TRP377 MET378 HIS379 THR380 ASP381 PRO382 VAL383 SER384 GLN385 LYS386 ASN387 GLU388 SER389 VAL390 ARG391 ASN392 GLN393 VAL394 GLU395 ASP396 LEU397 LEU398 ALA399 THR400 LEU401 GLU402 LYS403 SER404 GLY405 ALA406 GLY407 VAL408 PRO409 ALA410 VAL411 ILE412 LEU413 ARG414 ARG415 PRO416 ASN417 GLN418 SER419 GLN420 PRO421 LEU422 PRO423 PRO424 SER425 SER426 LEU427 GLN428 ARG429 PHE430 LEU431 ARG432 ALA433 ARG434 ASN435 ILE436 SER437 GLY438 VAL439 VAL440 LEU441 ALA442 ASP443 HIS444 SER445 GLY446 ALA447 PHE448 HIS449 ASN450 LYS451 TYR452 TYR453 GLN454 SER455 ILE456 TYR457 ASP458 THR459 ALA460 GLU461 ASN462 ILE463 ASN464 VAL465 SER466 TYR467 PRO468 GLU469 TRP470 LEU471 SER472 PRO473 GLU474 GLU475 ASP476 LEU477 ASN478 PHE479 VAL480 THR481 ASP482 THR483 ALA484 LYS485 ALA486 LEU487 ALA488 ASP489 VAL490 ALA491 THR492 VAL493 LEU494 GLY495 ARG496 ALA497 LEU498 TYR499 GLU500 LEU501 ALA502 GLY503 GLY504 THR505 ASN506 PHE507 SER508 ASP509 THR510 VAL511 GLN512 ALA513 ASP514 PRO515 GLN516 THR517 VAL518 THR519 ARG520 LEU521 LEU522 TYR523 GLY524 PHE525 LEU526 ILE527 LYS528 ALA529 ASN530 ASN531 SER532 TRP533 PHE534 GLN535 SER536 ILE537 LEU538 ARG539 GLN540 ASP541 LEU542 ARG543 SER544 TYR545 LEU546 GLY547 ASP548 GLY549 PRO550 LEU551 GLN552 HIS553 TYR554 ILE555 ALA556 VAL557 SER558 SER559 PRO560 THR561 ASN562 THR563 THR564 TYR565 VAL566 VAL567 GLN568 TYR569 ALA570 LEU571 ALA572 ASN573 LEU574 THR575 GLY576 THR577 VAL578 VAL579 ASN580 LEU581 THR582 ARG583 GLU584 GLN585 CYS586 GLN587 ASP588 PRO589 SER590 LYS591 VAL592 PRO593 SER594 GLU595 ASN596 LYS597 ASP598 LEU599 TYR600 GLU601 TYR602 SER603 TRP604 VAL605 GLN606 GLY607 PRO608 LEU609 HIS610 SER611 ASN612 GLU613 THR614 ASP615 ARG616 LEU617 PRO618 ARG619 CYS620 VAL621 ARG622 SER623 THR624 ALA625 ARG626 LEU627 ALA628 ARG629 ALA630 LEU631 SER632 PRO633 ALA634 PHE635 GLU636 LEU637 SER638 GLN639 TRP640 SER641 SER642 THR643 GLU644 TYR645 SER646 THR647 TRP648 THR649 GLU650 SER651 ARG652 TRP653 LYS654 ASP655 ILE656 ARG657 ALA658 ARG659 ILE660 PHE661 LEU662 ILE663 ALA664 SER665 LYS666 GLU667 LEU668 GLU669 LEU670 ILE671 THR672 LEU673 THR674 VAL675 GLY676 PHE677 GLY678 ILE679 LEU680 ILE681 PHE682 SER683 LEU684 ILE685 VAL686 THR687 TYR688 CYS689 ILE690 ASN691 ALA692 LYS693 ALA694 ASP695 VAL696 LEU697 PHE698
Unit 2 GLY78 ALA79 LYS80 HIS81 VAL82 ILE83 MET84 LEU85 PHE86 VAL87 PRO88 VAL89 THR90 LEU91 CYS92 MET93 VAL94 VAL95 VAL96 VAL97 ALA98 THR99 ILE100 LYS101 SER102 VAL103 SER104 PHE105 TYR106 THR107 ARG108 LYS109 ASP110 GLY111 GLN112 LEU113 ILE114 TYR115 THR116 PRO117 PHE118 THR119 GLU120 ASP121 THR122 GLU123 THR124 VAL125 GLY126 GLN127 ARG128 ALA129 LEU130 HIS131 SER132 ILE133 LEU134 ASN135 ALA136 ALA137 ILE138 MET139 ILE140 SER141 VAL142 ILE143 VAL144 VAL145 MET146 THR147 ILE148 LEU149 LEU150 VAL151 VAL152 LEU153 TYR154 LYS155 TYR156 ARG157 CYS158 TYR159 LYS160 VAL161 ILE162 HIS163 ALA164 TRP165 LEU166 ILE167 ILE168 SER169 SER170 LEU171 LEU172 LEU173 LEU174 PHE175 PHE176 PHE177 SER178 PHE179 ILE180 TYR181 LEU182 GLY183 GLU184 VAL185 PHE186 LYS187 THR188 TYR189 ASN190 VAL191 ALA192 VAL193 ASP194 TYR195 ILE196 THR197 VAL198 ALA199 LEU200 LEU201 ILE202 TRP203 ASN204 PHE205 GLY206 VAL207 VAL208 GLY209 MET210 ILE211 SER212 ILE213 HIS214 TRP215 LYS216 GLY217 PRO218 LEU219 ARG220 LEU221 GLN222 GLN223 ALA224 TYR225 LEU226 ILE227 MET228 ILE229 SER230 ALA231 LEU232 MET233 ALA234 LEU235 VAL236 PHE237 ILE238 LYS239 TYR240 LEU241 PRO242 GLU243 TRP244 THR245 ALA246 TRP247 LEU248 ILE249 LEU250 ALA251 VAL252 ILE253 SER254 VAL255 THR256 ASP257 LEU258 VAL259 ALA260 VAL261 LEU262 CYS263 ASN279 GLU280 THR281 LEU282 PHE283 PRO284 ALA285 LEU286 ILE287 TYR288 GLY378 VAL379 LYS380 LEU381 GLY382 LEU383 GLY384 ASP385 PHE386 ILE387 PHE388 TYR389 SER390 VAL391 LEU392 VAL393 GLY394 LYS395 ALA396 SER397 ALA398 THR399 ALA400 SER401 GLY402 ASP403 TRP404 ASN405 THR406 THR407 ILE408 ALA409 CYS410 PHE411 VAL412 ALA413 ILE414 LEU415 ILE416 GLY417 LEU418 CYS419 LEU420 THR421 LEU422 LEU423 LEU424 LEU425 ALA426 ILE427 PHE428 LYS429 LYS430 ALA431 LEU432 PRO433 ALA434 LEU435 PRO436 ILE437 SER438 ILE439 THR440 PHE441 GLY442 LEU443 VAL444 PHE445 TYR446 PHE447 ALA448 THR449 ASP450 TYR451 LEU452 VAL453 GLN454 PRO455 PHE456 MET457 ASP458 GLN459 LEU460 ALA461 PHE462 HIS463 GLN464 PHE465 TYR466 ILE467
Unit 3 GLY2 ALA3 ALA4 VAL5 PHE6 PHE7 GLY8 CYS9 THR10 PHE11 VAL12 ALA13 PHE14 GLY15 PRO16 ALA17 PHE18 ALA19 LEU20 PHE21 LEU22 ILE23 THR24 VAL25 ALA26 GLY27 ASP28 PRO29 LEU30 ARG31 VAL32 ILE33 ILE34 LEU35 VAL36 ALA37 GLY38 ALA39 PHE40 PHE41 TRP42 LEU43 VAL44 SER45 LEU46 LEU47 LEU48 ALA49 SER50 VAL51 VAL52 TRP53 PHE54 ILE55 LEU56 VAL57 HIS58 VAL59 THR60 ASP61 ARG62 SER63 ASP64 ALA65 ARG66 LEU67 GLN68 TYR69 GLY70 LEU71 LEU72 ILE73 PHE74 GLY75 ALA76 ALA77 VAL78 SER79 VAL80 LEU81 LEU82 GLN83 GLU84 VAL85 PHE86 ARG87 PHE88 ALA89 TYR90 TYR91 LYS92 LEU93 LEU94 LYS95 LYS96 ALA97 ASP98 GLU99 GLY100 LEU101 ALA102 SER103 LEU104 SER105 GLU106 ASP107 GLY108 ARG109 SER110 PRO111 ILE112 SER113 ILE114 ARG115 GLN116 MET117 ALA118 TYR119 VAL120 SER121 GLY122 LEU123 SER124 PHE125 GLY126 ILE127 ILE128 SER129 GLY130 VAL131 PHE132 SER133 VAL134 ILE135 ASN136 ILE137 LEU138 ALA139 ASP140 ALA141 LEU142 GLY143 PRO144 GLY145 VAL146 VAL147 GLY148 ILE149 HIS150 GLY151 ASP152 SER153 PRO154 TYR155 TYR156 PHE157 LEU158 THR159 SER160 ALA161 PHE162 LEU163 THR164 ALA165 ALA166 ILE167 ILE168 LEU169 LEU170 HIS171 THR172 PHE173 TRP174 GLY175 VAL176 VAL177 PHE178 PHE179 ASP180 ALA181 CYS182 GLU183 ARG184 ARG185 ARG186 TYR187 TRP188 ALA189 LEU190 GLY191 LEU192 VAL193 VAL194 GLY195 SER196 HIS197 LEU198 LEU199 THR200 SER201 GLY202 LEU203 THR204 PHE205 LEU206 ASN207 PRO208 TRP209 TYR210 GLU211 ALA212 SER213 LEU214 LEU215 PRO216 ILE217 TYR218 ALA219 VAL220 THR221 VAL222 SER223 MET224 GLY225 LEU226 TRP227 ALA228 PHE229 ILE230 THR231 ALA232 GLY233 GLY234 SER235 LEU236 ARG237 SER238 ILE239 GLN240 ARG241 SER242 LEU243 LEU244
Unit 4 ASN2 LEU3 GLU4 ARG5 VAL6 SER7 ASN8 GLU9 GLU10 LYS11 LEU12 ASN13 LEU14 CYS15 ARG16 LYS17 TYR18 TYR19 LEU20 GLY21 GLY22 PHE23 ALA24 PHE25 LEU26 PRO27 PHE28 LEU29 TRP30 LEU31 VAL32 ASN33 ILE34 PHE35 TRP36 PHE37 PHE38 ARG39 GLU40 ALA41 PHE42 LEU43 VAL44 PRO45 ALA46 TYR47 THR48 GLU49 GLN50 SER51 GLN52 ILE53 LYS54 GLY55 TYR56 VAL57 TRP58 ARG59 SER60 ALA61 VAL62 GLY63 PHE64 LEU65 PHE66 TRP67 VAL68 ILE69 VAL70 LEU71 THR72 SER73 TRP74 ILE75 THR76 ILE77 PHE78 GLN79 ILE80 TYR81 ARG82 PRO83 ARG84 TRP85 GLY86 ALA87 LEU88 GLY89 ASP90 TYR91 LEU92 SER93 PHE94 THR95 ILE96 PRO97 LEU98 GLY99 THR100 PRO101
Unit 5 ALA5 ALA6 ALA7 ALA8 ALA9 ALA10 ALA11 ALA12 ALA13 ALA14 ALA15 ALA16 ALA17 ALA18 ALA19 ALA20 ALA21 ALA22 ALA23 ALA24 ALA25 ALA26 ALA27 ALA28
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany