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Sequence, Chains, Asymmetric and Biological Units

Title EXONUCLEASE DOMAIN-CONTAINING 1 (EXD1) IN THE NATIVE CONFORM
Keywords HYDROLASE, EXONUCLEASE, PIRNA BIOGENESIS, DIMER, RNA BINDING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5FIQ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   EXD1  A 242 1950 0
2  Protein   EXD1  C 240 1933 0
3  Protein   EXD1  E 240 1933 0
4  Protein   EXD1  G 240 1936 0
5  Protein   EXD1  I 240 1933 0
6 Water     53 0 53
total       1255 9685 53
Proteins
Unit 1 LYS73 VAL74 LEU75 LYS76 ILE77 SER78 GLN79 THR80 LYS81 TYR82 GLU83 GLU84 ILE85 LEU86 LYS87 ILE88 SER89 LYS90 LYS91 TYR92 ILE93 PHE94 ILE95 ASN96 GLN97 VAL98 ASP99 LYS100 SER101 PHE102 HIS103 GLU104 ALA105 VAL106 ASP107 ASP108 LEU109 ASN110 GLN111 GLN112 ASP113 PHE114 ILE115 ALA116 VAL117 SER118 GLY119 ASP120 GLY121 ALA122 ASN123 MET124 GLY125 ARG126 LYS127 CYS128 LYS129 MET130 PRO131 PHE132 LEU133 VAL134 LEU135 SER136 THR137 ASP138 HIS139 GLN140 ILE141 TYR142 ILE143 PHE144 ASP145 ILE146 GLN147 VAL148 MET149 GLN150 TYR151 HIS152 ALA153 PHE154 GLU155 SER156 GLY157 LEU158 LYS159 LYS160 ILE161 LEU162 GLU163 GLY164 ASP165 SER166 PRO167 LYS168 LYS169 ILE170 ALA171 HIS172 ASP173 CYS174 ARG175 LYS176 LEU177 SER178 ASP179 CYS180 LEU181 TYR182 HIS183 LYS184 HIS185 ASN186 VAL187 LYS188 LEU189 LYS190 SER191 VAL192 PHE193 ASP194 THR195 GLN196 VAL197 GLY198 ASP199 LEU200 ILE201 ILE202 THR203 LYS204 ASN205 LYS206 LYS207 VAL208 THR209 LEU210 PRO211 ASN212 LYS213 VAL214 LYS215 SER216 LEU217 GLY218 GLU219 CYS220 LEU221 THR222 ASN223 TYR224 LEU225 GLY226 LEU227 GLN228 GLN229 ASN230 THR231 ILE232 ASP233 GLU234 LYS235 LEU236 ASP237 ILE238 VAL239 GLN240 SER241 THR242 GLU243 ARG244 PRO245 LEU246 SER247 VAL248 LYS249 ILE250 LYS251 ASP252 SER253 LEU254 ALA255 ARG256 ASN257 ILE258 ALA259 PHE260 LEU261 HIS262 HIS263 LEU264 SER265 GLU266 VAL267 ILE268 ASN269 GLU270 GLU271 MET272 GLN273 LEU274 PRO275 PHE276 TYR277 ARG278 GLY279 VAL280 GLU281 CYS282 TYR283 ILE284 GLU285 ASN286 ILE287 ARG288 SER289 SER290 ASP291 ASP292 PHE293 LYS294 ALA295 TRP296 GLU297 LEU298 CYS299 GLY300 LYS301 LEU302 ASN303 GLN304 ILE305 PRO306 LYS307 GLU308 PHE309 ARG310 ASN311 ALA312 ILE313 ASP314
Unit 2 LEU75 LYS76 ILE77 SER78 GLN79 THR80 LYS81 TYR82 GLU83 GLU84 ILE85 LEU86 LYS87 ILE88 SER89 LYS90 LYS91 TYR92 ILE93 PHE94 ILE95 ASN96 GLN97 VAL98 ASP99 LYS100 SER101 PHE102 HIS103 GLU104 ALA105 VAL106 ASP107 ASP108 LEU109 ASN110 GLN111 GLN112 ASP113 PHE114 ILE115 ALA116 VAL117 SER118 GLY119 ASP120 GLY121 ALA122 ASN123 MET124 GLY125 ARG126 LYS127 CYS128 LYS129 MET130 PRO131 PHE132 LEU133 VAL134 LEU135 SER136 THR137 ASP138 HIS139 GLN140 ILE141 TYR142 ILE143 PHE144 ASP145 ILE146 GLN147 VAL148 MET149 GLN150 TYR151 HIS152 ALA153 PHE154 GLU155 SER156 GLY157 LEU158 LYS159 LYS160 ILE161 LEU162 GLU163 GLY164 ASP165 SER166 PRO167 LYS168 LYS169 ILE170 ALA171 HIS172 ASP173 CYS174 ARG175 LYS176 LEU177 SER178 ASP179 CYS180 LEU181 TYR182 HIS183 LYS184 HIS185 ASN186 VAL187 LYS188 LEU189 LYS190 SER191 VAL192 PHE193 ASP194 THR195 GLN196 VAL197 GLY198 ASP199 LEU200 ILE201 ILE202 THR203 LYS204 ASN205 LYS206 LYS207 VAL208 THR209 LEU210 PRO211 ASN212 LYS213 VAL214 LYS215 SER216 LEU217 GLY218 GLU219 CYS220 LEU221 THR222 ASN223 TYR224 LEU225 GLY226 LEU227 GLN228 GLN229 ASN230 THR231 ILE232 ASP233 GLU234 LYS235 LEU236 ASP237 ILE238 VAL239 GLN240 SER241 THR242 GLU243 ARG244 PRO245 LEU246 SER247 VAL248 LYS249 ILE250 LYS251 ASP252 SER253 LEU254 ALA255 ARG256 ASN257 ILE258 ALA259 PHE260 LEU261 HIS262 HIS263 LEU264 SER265 GLU266 VAL267 ILE268 ASN269 GLU270 GLU271 MET272 GLN273 LEU274 PRO275 PHE276 TYR277 ARG278 GLY279 VAL280 GLU281 CYS282 TYR283 ILE284 GLU285 ASN286 ILE287 ARG288 SER289 SER290 ASP291 ASP292 PHE293 LYS294 ALA295 TRP296 GLU297 LEU298 CYS299 GLY300 LYS301 LEU302 ASN303 GLN304 ILE305 PRO306 LYS307 GLU308 PHE309 ARG310 ASN311 ALA312 ILE313 ASP314
Unit 3 LEU75 LYS76 ILE77 SER78 GLN79 THR80 LYS81 TYR82 GLU83 GLU84 ILE85 LEU86 LYS87 ILE88 SER89 LYS90 LYS91 TYR92 ILE93 PHE94 ILE95 ASN96 GLN97 VAL98 ASP99 LYS100 SER101 PHE102 HIS103 GLU104 ALA105 VAL106 ASP107 ASP108 LEU109 ASN110 GLN111 GLN112 ASP113 PHE114 ILE115 ALA116 VAL117 SER118 GLY119 ASP120 GLY121 ALA122 ASN123 MET124 GLY125 ARG126 LYS127 CYS128 LYS129 MET130 PRO131 PHE132 LEU133 VAL134 LEU135 SER136 THR137 ASP138 HIS139 GLN140 ILE141 TYR142 ILE143 PHE144 ASP145 ILE146 GLN147 VAL148 MET149 GLN150 TYR151 HIS152 ALA153 PHE154 GLU155 SER156 GLY157 LEU158 LYS159 LYS160 ILE161 LEU162 GLU163 GLY164 ASP165 SER166 PRO167 LYS168 LYS169 ILE170 ALA171 HIS172 ASP173 CYS174 ARG175 LYS176 LEU177 SER178 ASP179 CYS180 LEU181 TYR182 HIS183 LYS184 HIS185 ASN186 VAL187 LYS188 LEU189 LYS190 SER191 VAL192 PHE193 ASP194 THR195 GLN196 VAL197 GLY198 ASP199 LEU200 ILE201 ILE202 THR203 LYS204 ASN205 LYS206 LYS207 VAL208 THR209 LEU210 PRO211 ASN212 LYS213 VAL214 LYS215 SER216 LEU217 GLY218 GLU219 CYS220 LEU221 THR222 ASN223 TYR224 LEU225 GLY226 LEU227 GLN228 GLN229 ASN230 THR231 ILE232 ASP233 GLU234 LYS235 LEU236 ASP237 ILE238 VAL239 GLN240 SER241 THR242 GLU243 ARG244 PRO245 LEU246 SER247 VAL248 LYS249 ILE250 LYS251 ASP252 SER253 LEU254 ALA255 ARG256 ASN257 ILE258 ALA259 PHE260 LEU261 HIS262 HIS263 LEU264 SER265 GLU266 VAL267 ILE268 ASN269 GLU270 GLU271 MET272 GLN273 LEU274 PRO275 PHE276 TYR277 ARG278 GLY279 VAL280 GLU281 CYS282 TYR283 ILE284 GLU285 ASN286 ILE287 ARG288 SER289 SER290 ASP291 ASP292 PHE293 LYS294 ALA295 TRP296 GLU297 LEU298 CYS299 GLY300 LYS301 LEU302 ASN303 GLN304 ILE305 PRO306 LYS307 GLU308 PHE309 ARG310 ASN311 ALA312 ILE313 ASP314
Unit 4 LEU75 LYS76 ILE77 SER78 GLN79 THR80 LYS81 TYR82 GLU83 GLU84 ILE85 LEU86 LYS87 ILE88 SER89 LYS90 LYS91 TYR92 ILE93 PHE94 ILE95 ASN96 GLN97 VAL98 ASP99 LYS100 SER101 PHE102 HIS103 GLU104 ALA105 VAL106 ASP107 ASP108 LEU109 ASN110 GLN111 GLN112 ASP113 PHE114 ILE115 ALA116 VAL117 SER118 GLY119 ASP120 GLY121 ALA122 ASN123 MET124 GLY125 ARG126 LYS127 CYS128 LYS129 MET130 PRO131 PHE132 LEU133 VAL134 LEU135 SER136 THR137 ASP138 HIS139 GLN140 ILE141 TYR142 ILE143 PHE144 ASP145 ILE146 GLN147 VAL148 MET149 GLN150 TYR151 HIS152 ALA153 PHE154 GLU155 SER156 GLY157 LEU158 LYS159 LYS160 ILE161 LEU162 GLU163 GLY164 ASP165 SER166 PRO167 LYS168 LYS169 ILE170 ALA171 HIS172 ASP173 CYS174 ARG175 LYS176 LEU177 SER178 ASP179 CYS180 LEU181 TYR182 HIS183 LYS184 HIS185 ASN186 VAL187 LYS188 LEU189 LYS190 SER191 VAL192 PHE193 ASP194 THR195 GLN196 VAL197 GLY198 ASP199 LEU200 ILE201 ILE202 THR203 LYS204 ASN205 LYS206 LYS207 VAL208 THR209 LEU210 PRO211 ASN212 LYS213 VAL214 LYS215 SER216 LEU217 GLY218 GLU219 CYS220 LEU221 THR222 ASN223 TYR224 LEU225 GLY226 LEU227 GLN228 GLN229 ASN230 THR231 ILE232 ASP233 GLU234 LYS235 LEU236 ASP237 ILE238 VAL239 GLN240 SER241 THR242 GLU243 ARG244 PRO245 LEU246 SER247 VAL248 LYS249 ILE250 LYS251 ASP252 SER253 LEU254 ALA255 ARG256 ASN257 ILE258 ALA259 PHE260 LEU261 HIS262 HIS263 LEU264 SER265 GLU266 VAL267 ILE268 ASN269 GLU270 GLU271 MET272 GLN273 LEU274 PRO275 PHE276 TYR277 ARG278 GLY279 VAL280 GLU281 CYS282 TYR283 ILE284 GLU285 ASN286 ILE287 ARG288 SER289 SER290 ASP291 ASP292 PHE293 LYS294 ALA295 TRP296 GLU297 LEU298 CYS299 GLY300 LYS301 LEU302 ASN303 GLN304 ILE305 PRO306 LYS307 GLU308 PHE309 ARG310 ASN311 ALA312 ILE313 ASP314
Unit 5 LEU75 LYS76 ILE77 SER78 GLN79 THR80 LYS81 TYR82 GLU83 GLU84 ILE85 LEU86 LYS87 ILE88 SER89 LYS90 LYS91 TYR92 ILE93 PHE94 ILE95 ASN96 GLN97 VAL98 ASP99 LYS100 SER101 PHE102 HIS103 GLU104 ALA105 VAL106 ASP107 ASP108 LEU109 ASN110 GLN111 GLN112 ASP113 PHE114 ILE115 ALA116 VAL117 SER118 GLY119 ASP120 GLY121 ALA122 ASN123 MET124 GLY125 ARG126 LYS127 CYS128 LYS129 MET130 PRO131 PHE132 LEU133 VAL134 LEU135 SER136 THR137 ASP138 HIS139 GLN140 ILE141 TYR142 ILE143 PHE144 ASP145 ILE146 GLN147 VAL148 MET149 GLN150 TYR151 HIS152 ALA153 PHE154 GLU155 SER156 GLY157 LEU158 LYS159 LYS160 ILE161 LEU162 GLU163 GLY164 ASP165 SER166 PRO167 LYS168 LYS169 ILE170 ALA171 HIS172 ASP173 CYS174 ARG175 LYS176 LEU177 SER178 ASP179 CYS180 LEU181 TYR182 HIS183 LYS184 HIS185 ASN186 VAL187 LYS188 LEU189 LYS190 SER191 VAL192 PHE193 ASP194 THR195 GLN196 VAL197 GLY198 ASP199 LEU200 ILE201 ILE202 THR203 LYS204 ASN205 LYS206 LYS207 VAL208 THR209 LEU210 PRO211 ASN212 LYS213 VAL214 LYS215 SER216 LEU217 GLY218 GLU219 CYS220 LEU221 THR222 ASN223 TYR224 LEU225 GLY226 LEU227 GLN228 GLN229 ASN230 THR231 ILE232 ASP233 GLU234 LYS235 LEU236 ASP237 ILE238 VAL239 GLN240 SER241 THR242 GLU243 ARG244 PRO245 LEU246 SER247 VAL248 LYS249 ILE250 LYS251 ASP252 SER253 LEU254 ALA255 ARG256 ASN257 ILE258 ALA259 PHE260 LEU261 HIS262 HIS263 LEU264 SER265 GLU266 VAL267 ILE268 ASN269 GLU270 GLU271 MET272 GLN273 LEU274 PRO275 PHE276 TYR277 ARG278 GLY279 VAL280 GLU281 CYS282 TYR283 ILE284 GLU285 ASN286 ILE287 ARG288 SER289 SER290 ASP291 ASP292 PHE293 LYS294 ALA295 TRP296 GLU297 LEU298 CYS299 GLY300 LYS301 LEU302 ASN303 GLN304 ILE305 PRO306 LYS307 GLU308 PHE309 ARG310 ASN311 ALA312 ILE313 ASP314
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany