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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF SDA1 NUCLEASE WITH BOUND ZINC ION
Keywords BETA-BETA-ALPHA METAL FINGER NUCLEASE, SEQUENCE NONSPECIFIC BINDING, METAL BINDING, DNA BINDING PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5FGW     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   EXTRACELLULAR STREPTODORNASE D  A 241 1835 0
2  Protein   EXTRACELLULAR STREPTODORNASE D  B 247 1904 0
3  Protein   EXTRACELLULAR STREPTODORNASE D  C 243 1857 0
4  Protein   EXTRACELLULAR STREPTODORNASE D  D 247 1882 0
5  Ligand   EXTRACELLULAR STREPTODORNASE D  A 12 0 18
6  Ligand   EXTRACELLULAR STREPTODORNASE D  B 11 0 14
7  Ligand   EXTRACELLULAR STREPTODORNASE D  C 10 0 19
8  Ligand   EXTRACELLULAR STREPTODORNASE D  D 9 0 18
9 Water     428 0 428
total       1448 7478 497
Proteins
Unit 1 TRP46 SER47 ILE48 GLU49 GLN50 HIS51 PRO52 ASN53 TYR54 TYR55 HIS56 VAL57 GLU58 GLY59 LYS60 ALA61 GLN62 LEU63 ASP64 ILE65 LYS66 ASN67 PHE68 PRO69 GLU70 LEU71 TYR72 ARG73 THR74 THR75 GLU76 ARG77 VAL78 TYR79 LYS80 LYS81 SER82 GLY83 GLN84 SER85 THR86 LYS87 PRO88 VAL89 THR90 VAL91 SER92 ASN93 ILE94 HIS95 TYR96 SER97 VAL98 LEU99 ASP100 GLY101 TYR102 GLY103 ARG104 SER105 GLY106 GLU107 ALA108 TYR109 GLY110 ILE111 ILE112 THR113 LYS114 ASP115 MET116 ILE117 ASP118 MET119 SER120 ALA121 GLY122 TYR123 ARG124 GLU125 LYS126 TRP127 GLU128 SER129 LYS130 PRO131 GLU132 PRO133 SER134 GLY135 TRP136 TYR137 SER138 TYR139 PHE140 PHE141 LYS142 ASN143 THR144 ASN145 GLN146 ARG147 ALA148 THR149 GLU150 SER151 ASP152 TYR153 LYS154 HIS155 SER156 PRO157 LYS158 ASN159 VAL160 SER161 LYS162 ILE163 SER164 ASN165 ASN166 ILE167 LYS168 ALA169 SER170 ARG179 ASN180 GLY181 TYR182 LEU183 PHE184 ASP185 ARG186 SER187 GLY188 LEU189 ILE190 ALA191 ASP192 SER193 LEU194 GLY195 GLY196 ARG197 PRO198 PHE199 ARG200 ASN201 ASN202 LEU203 ILE204 THR205 GLY206 THR207 ARG208 THR209 GLN210 ASN211 VAL212 GLY213 ASN214 ASN215 ASP216 ARG217 LYS218 GLY219 GLY220 MET221 GLN222 TYR223 ILE224 GLU225 ASN226 LYS227 VAL228 LEU229 ASP230 HIS231 ILE232 LYS233 ARG234 ASN235 PRO236 LYS237 VAL238 HIS239 VAL240 TYR241 TYR242 LYS243 ALA244 THR245 PRO246 VAL247 TYR248 GLN249 GLY250 SER251 GLU252 LEU253 LEU254 PRO255 ARG256 ALA257 VAL258 LEU259 VAL260 SER261 ALA262 LEU263 SER264 SER265 ASP266 GLY267 PHE268 ILE269 ASP270 GLU271 THR272 VAL273 ARG274 VAL275 PHE276 ASN277 ASN278 VAL279 ALA280 GLY281 PHE282 ASN283 ILE284 ASP285 TYR286 GLN287 ASN288 GLY289 GLY290 LEU291 LEU292 SER293 SER294
Unit 2 TRP46 SER47 ILE48 GLU49 GLN50 HIS51 PRO52 ASN53 TYR54 TYR55 HIS56 VAL57 GLU58 GLY59 LYS60 ALA61 GLN62 LEU63 ASP64 ILE65 LYS66 ASN67 PHE68 PRO69 GLU70 LEU71 TYR72 ARG73 THR74 THR75 GLU76 ARG77 VAL78 TYR79 LYS80 LYS81 SER82 SER85 THR86 LYS87 PRO88 VAL89 THR90 VAL91 SER92 ASN93 ILE94 HIS95 TYR96 SER97 VAL98 LEU99 ASP100 GLY101 TYR102 GLY103 ARG104 SER105 GLY106 GLU107 ALA108 TYR109 GLY110 ILE111 ILE112 THR113 LYS114 ASP115 MET116 ILE117 ASP118 MET119 SER120 ALA121 GLY122 TYR123 ARG124 GLU125 LYS126 TRP127 GLU128 SER129 LYS130 PRO131 GLU132 PRO133 SER134 GLY135 TRP136 TYR137 SER138 TYR139 PHE140 PHE141 LYS142 ASN143 THR144 ASN145 GLN146 ARG147 ALA148 THR149 GLU150 SER151 ASP152 TYR153 LYS154 HIS155 SER156 PRO157 LYS158 ASN159 VAL160 SER161 LYS162 ILE163 SER164 ASN165 ASN166 ILE167 LYS168 ALA169 SER170 ILE171 LEU172 LEU173 SER174 ASN175 GLY176 ASN177 VAL178 ARG179 ASN180 GLY181 TYR182 LEU183 PHE184 ASP185 ARG186 SER187 GLY188 LEU189 ILE190 ALA191 ASP192 SER193 LEU194 GLY195 GLY196 ARG197 PRO198 PHE199 ARG200 ASN201 ASN202 LEU203 ILE204 THR205 GLY206 THR207 ARG208 THR209 GLN210 ASN211 VAL212 GLY213 ASN214 ASN215 ASP216 ARG217 LYS218 GLY219 GLY220 MET221 GLN222 TYR223 ILE224 GLU225 ASN226 LYS227 VAL228 LEU229 ASP230 HIS231 ILE232 LYS233 ARG234 ASN235 PRO236 LYS237 VAL238 HIS239 VAL240 TYR241 TYR242 LYS243 ALA244 THR245 PRO246 VAL247 TYR248 GLN249 GLY250 SER251 GLU252 LEU253 LEU254 PRO255 ARG256 ALA257 VAL258 LEU259 VAL260 SER261 ALA262 LEU263 SER264 SER265 ASP266 GLY267 PHE268 ILE269 ASP270 GLU271 THR272 VAL273 ARG274 VAL275 PHE276 ASN277 ASN278 VAL279 ALA280 GLY281 PHE282 ASN283 ILE284 ASP285 TYR286 GLN287 ASN288 GLY289 GLY290 LEU291 LEU292 SER293 SER294
Unit 3 TRP46 SER47 ILE48 GLU49 GLN50 HIS51 PRO52 ASN53 TYR54 TYR55 HIS56 VAL57 GLU58 GLY59 LYS60 ALA61 GLN62 LEU63 ASP64 ILE65 LYS66 ASN67 PHE68 PRO69 GLU70 LEU71 TYR72 ARG73 THR74 THR75 GLU76 ARG77 VAL78 TYR79 LYS80 LYS81 SER82 GLY83 GLN84 SER85 THR86 LYS87 PRO88 VAL89 THR90 VAL91 SER92 ASN93 ILE94 HIS95 TYR96 SER97 VAL98 LEU99 ASP100 GLY101 TYR102 GLY103 ARG104 SER105 GLY106 GLU107 ALA108 TYR109 GLY110 ILE111 ILE112 THR113 LYS114 ASP115 MET116 ILE117 ASP118 MET119 SER120 ALA121 GLY122 TYR123 ARG124 GLU125 LYS126 TRP127 GLU128 SER129 LYS130 PRO131 GLU132 PRO133 SER134 GLY135 TRP136 TYR137 SER138 TYR139 PHE140 PHE141 LYS142 ASN143 THR144 ASN145 GLN146 ARG147 ALA148 THR149 GLU150 SER151 ASP152 TYR153 LYS154 HIS155 SER156 PRO157 LYS158 ASN159 VAL160 SER161 LYS162 ILE163 SER164 ASN165 ASN166 ILE167 LYS168 ALA169 SER170 ILE171 VAL178 ARG179 ASN180 GLY181 TYR182 LEU183 PHE184 ASP185 ARG186 SER187 GLY188 LEU189 ILE190 ALA191 ASP192 SER193 LEU194 GLY195 GLY196 ARG197 PRO198 PHE199 ARG200 ASN201 ASN202 LEU203 ILE204 THR205 GLY206 THR207 ARG208 THR209 GLN210 ASN211 VAL212 GLY213 ASN214 ASN215 ASP216 ARG217 LYS218 GLY219 GLY220 MET221 GLN222 TYR223 ILE224 GLU225 ASN226 LYS227 VAL228 LEU229 ASP230 HIS231 ILE232 LYS233 ARG234 ASN235 PRO236 LYS237 VAL238 HIS239 VAL240 TYR241 TYR242 LYS243 ALA244 THR245 PRO246 VAL247 TYR248 GLN249 GLY250 SER251 GLU252 LEU253 LEU254 PRO255 ARG256 ALA257 VAL258 LEU259 VAL260 SER261 ALA262 LEU263 SER264 SER265 ASP266 GLY267 PHE268 ILE269 ASP270 GLU271 THR272 VAL273 ARG274 VAL275 PHE276 ASN277 ASN278 VAL279 ALA280 GLY281 PHE282 ASN283 ILE284 ASP285 TYR286 GLN287 ASN288 GLY289 GLY290 LEU291 LEU292 SER293 SER294
Unit 4 ASN45 TRP46 SER47 ILE48 GLU49 GLN50 HIS51 PRO52 ASN53 TYR54 TYR55 HIS56 VAL57 GLU58 GLY59 LYS60 ALA61 GLN62 LEU63 ASP64 ILE65 LYS66 ASN67 PHE68 PRO69 GLU70 LEU71 TYR72 ARG73 THR74 THR75 GLU76 ARG77 VAL78 TYR79 LYS80 LYS81 SER82 THR86 LYS87 PRO88 VAL89 THR90 VAL91 SER92 ASN93 ILE94 HIS95 TYR96 SER97 VAL98 LEU99 ASP100 GLY101 TYR102 GLY103 ARG104 SER105 GLY106 GLU107 ALA108 TYR109 GLY110 ILE111 ILE112 THR113 LYS114 ASP115 MET116 ILE117 ASP118 MET119 SER120 ALA121 GLY122 TYR123 ARG124 GLU125 LYS126 TRP127 GLU128 SER129 LYS130 PRO131 GLU132 PRO133 SER134 GLY135 TRP136 TYR137 SER138 TYR139 PHE140 PHE141 LYS142 ASN143 THR144 ASN145 GLN146 ARG147 ALA148 THR149 GLU150 SER151 ASP152 TYR153 LYS154 HIS155 SER156 PRO157 LYS158 ASN159 VAL160 SER161 LYS162 ILE163 SER164 ASN165 ASN166 ILE167 LYS168 ALA169 SER170 ILE171 LEU172 LEU173 SER174 ASN175 GLY176 ASN177 VAL178 ARG179 ASN180 GLY181 TYR182 LEU183 PHE184 ASP185 ARG186 SER187 GLY188 LEU189 ILE190 ALA191 ASP192 SER193 LEU194 GLY195 GLY196 ARG197 PRO198 PHE199 ARG200 ASN201 ASN202 LEU203 ILE204 THR205 GLY206 THR207 ARG208 THR209 GLN210 ASN211 VAL212 GLY213 ASN214 ASN215 ASP216 ARG217 LYS218 GLY219 GLY220 MET221 GLN222 TYR223 ILE224 GLU225 ASN226 LYS227 VAL228 LEU229 ASP230 HIS231 ILE232 LYS233 ARG234 ASN235 PRO236 LYS237 VAL238 HIS239 VAL240 TYR241 TYR242 LYS243 ALA244 THR245 PRO246 VAL247 TYR248 GLN249 GLY250 SER251 GLU252 LEU253 LEU254 PRO255 ARG256 ALA257 VAL258 LEU259 VAL260 SER261 ALA262 LEU263 SER264 SER265 ASP266 GLY267 PHE268 ILE269 ASP270 GLU271 THR272 VAL273 ARG274 VAL275 PHE276 ASN277 ASN278 VAL279 ALA280 GLY281 PHE282 ASN283 ILE284 ASP285 TYR286 GLN287 ASN288 GLY289 GLY290 LEU291 LEU292 SER293 SER294
Ligands
Unit 5 ZN301 ZN302 ZN303 ZN304 ZN305 ZN306 ZN307 ZN308 CL309 CL310 ACT311 ACT312
Unit 6 ZN301 ZN302 ZN303 ZN304 ZN305 ZN306 ZN307 ZN308 CL309 ACT310 NA311
Unit 7 ZN301 ZN302 ZN303 ZN304 ZN305 ZN306 EDO307 CL308 ACT309 ACT310
Unit 8 ZN301 ZN302 ZN303 ZN304 EDO305 EDO306 CL307 ACT308 NA309
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany