5FGB - Sequence, Chains, Asymmetric and Biological Units

• Title: THREE DIMENSIONAL STRUCTURE OF BROADLY NEUTRALIZING HUMAN AN HEPATITIS C VIRUS (HCV) GLYCOPROTEIN E2 FAB FRAGMENT HC33.4
• Keywords: FAB FRAGMENT, NEUTRALIZING ANTIBODY, HEPATITIS C VIRUS E2, I SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5FGB	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ANTI-HCV E2 FAB HC84-1 LIGHT CHAIN	A	213	1625	0
2	Protein	ANTI-HCV E2 FAB HC84-1 LIGHT CHAIN	B	212	1616	0
3	Protein	ANTI-HCV E2 FAB HC84-1 HEAVY CHAIN	C	215	1611	0
4	Protein	ANTI-HCV E2 FAB HC84-1 HEAVY CHAIN	E	213	1582	0
5	Protein	GENOME POLYPROTEIN	F	5	42	0
6	Protein	GENOME POLYPROTEIN	G	4	34	0
7	Ligand	ANTI-HCV E2 FAB HC84-1 LIGHT CHAIN	A	4	0	21
8	Ligand	ANTI-HCV E2 FAB HC84-1 LIGHT CHAIN	B	3	0	16
9	Ligand	ANTI-HCV E2 FAB HC84-1 HEAVY CHAIN	C	3	0	16
10	Ligand	ANTI-HCV E2 FAB HC84-1 HEAVY CHAIN	E	1	0	6
11	Water			604	0	604
total				1477	6510	663

Proteins

Unit 1	SER 1 TYR 2 GLU 3 LEU 4 THR 5 GLN 6 LEU 7 PRO 8 SER 9 LEU 10 SER 11 VAL 12 SER 13 LEU 14 GLY 15 GLN 16 THR 17 ALA 18 SER 19 ILE 20 THR 21 CYS 22 SER 23 GLY 24 ASP 25 ASN 26 LEU 27 GLY 28 ASP 29 LYS 30 PHE 31 VAL 32 CYS 33 TRP 34 TYR 35 GLN 36 GLN 37 LYS 38 PRO 39 GLY 40 GLN 41 THR 42 PRO 43 VAL 44 LEU 45 VAL 46 MET 47 TYR 48 GLU 49 ASP 50 THR 51 LYS 52 ARG 53 PRO 54 SER 55 GLY 56 ILE 57 PRO 58 GLU 59 ARG 60 PHE 61 ALA 62 GLY 63 SER 64 ASN 65 SER 66 GLY 67 ASN 68 THR 69 ALA 70 THR 71 LEU 72 THR 73 ILE 74 THR 75 GLY 76 THR 77 GLN 78 ALA 79 MET 80 ASP 81 GLU 82 ALA 83 ASP 84 TYR 85 TYR 86 CYS 87 GLN 88 THR 89 TRP 90 ASP 91 SER 92 SER 93 THR 94 ASP 95 VAL 96 VAL 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 THR 105 VAL 106 LEU 107 ARG 108 THR 109 VAL 110 ALA 111 ALA 112 PRO 113 SER 114 VAL 115 PHE 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 ASP 122 GLU 123 GLN 124 LEU 125 LYS 126 SER 127 GLY 128 THR 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 LEU 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 ARG 142 GLU 143 ALA 144 LYS 145 VAL 146 GLN 147 TRP 148 LYS 149 VAL 150 ASP 151 ASN 152 ALA 153 LEU 154 GLN 155 SER 156 GLY 157 ASN 158 SER 159 GLN 160 GLU 161 SER 162 VAL 163 THR 164 GLU 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 LEU 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 SER 182 LYS 183 ALA 184 ASP 185 TYR 186 GLU 187 LYS 188 HIS 189 LYS 190 VAL 191 TYR 192 ALA 193 CYS 194 GLU 195 VAL 196 THR 197 HIS 198 GLN 199 GLY 200 LEU 201 SER 202 SER 203 PRO 204 VAL 205 THR 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 GLY 212 GLU 213
Unit 2	SER 1 TYR 2 GLU 3 LEU 4 THR 5 GLN 6 LEU 7 PRO 8 SER 9 LEU 10 SER 11 VAL 12 SER 13 LEU 14 GLY 15 GLN 16 THR 17 ALA 18 SER 19 ILE 20 THR 21 CYS 22 SER 23 GLY 24 ASP 25 ASN 26 LEU 27 GLY 28 ASP 29 LYS 30 PHE 31 VAL 32 CYS 33 TRP 34 TYR 35 GLN 36 GLN 37 LYS 38 PRO 39 GLY 40 GLN 41 THR 42 PRO 43 VAL 44 LEU 45 VAL 46 MET 47 TYR 48 GLU 49 ASP 50 THR 51 LYS 52 ARG 53 PRO 54 SER 55 GLY 56 ILE 57 PRO 58 GLU 59 ARG 60 PHE 61 ALA 62 GLY 63 SER 64 ASN 65 SER 66 GLY 67 ASN 68 THR 69 ALA 70 THR 71 LEU 72 THR 73 ILE 74 THR 75 GLY 76 THR 77 GLN 78 ALA 79 MET 80 ASP 81 GLU 82 ALA 83 ASP 84 TYR 85 TYR 86 CYS 87 GLN 88 THR 89 TRP 90 ASP 91 SER 92 SER 93 THR 94 ASP 95 VAL 96 VAL 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 THR 105 VAL 106 LEU 107 ARG 108 THR 109 VAL 110 ALA 111 ALA 112 PRO 113 SER 114 VAL 115 PHE 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 ASP 122 GLU 123 GLN 124 LEU 125 LYS 126 SER 127 GLY 128 THR 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 LEU 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 ARG 142 GLU 143 ALA 144 LYS 145 VAL 146 GLN 147 TRP 148 LYS 149 VAL 150 ASP 151 ASN 152 ALA 153 LEU 154 GLN 155 SER 156 GLY 157 ASN 158 SER 159 GLN 160 GLU 161 SER 162 VAL 163 THR 164 GLU 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 LEU 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 SER 182 LYS 183 ALA 184 ASP 185 TYR 186 GLU 187 LYS 188 HIS 189 LYS 190 VAL 191 TYR 192 ALA 193 CYS 194 GLU 195 VAL 196 THR 197 HIS 198 GLN 199 GLY 200 LEU 201 SER 202 SER 203 PRO 204 VAL 205 THR 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 GLY 212
Unit 3	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLN 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 SER 30 SER 31 TYR 32 ALA 33 MET 34 SER 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 SER 49 ALA 50 ILE 51 SER 52 GLY 53 SER 54 GLY 55 GLY 56 SER 57 THR 58 TYR 59 TYR 60 ALA 61 ASP 62 SER 63 VAL 64 LYS 65 GLY 66 ARG 67 PHE 68 THR 69 ILE 70 SER 71 ARG 72 ASP 73 ASN 74 SER 75 LYS 76 ASN 77 ILE 78 LEU 79 TYR 80 LEU 81 GLN 82 MET 83 ASN 84 SER 85 LEU 86 LYS 87 ALA 88 GLU 89 ASP 90 THR 91 ALA 92 THR 93 TYR 94 TYR 95 CYS 96 ALA 97 ARG 98 ALA 99 VAL 100 VAL 101 PHE 102 TYR 104 TYR 105 SER 106 LYS 107 TYR 108 PHE 109 ASP 110 TYR 111 TRP 112 SER 113 GLN 114 GLY 115 THR 116 LEU 117 VAL 118 THR 119 VAL 120 SER 121 SER 122 ALA 123 SER 124 THR 125 LYS 126 GLY 127 PRO 128 SER 129 VAL 130 PHE 131 PRO 132 LEU 133 ALA 134 PRO 135 GLY 143 THR 144 ALA 145 ALA 146 LEU 147 GLY 148 CYS 149 LEU 150 VAL 151 LYS 152 ASP 153 TYR 154 PHE 155 PRO 156 GLU 157 PRO 158 VAL 159 THR 160 VAL 161 SER 162 TRP 163 ASN 164 SER 165 GLY 166 ALA 167 LEU 168 THR 169 SER 170 GLY 171 VAL 172 HIS 173 THR 174 PHE 175 PRO 176 ALA 177 VAL 178 LEU 179 GLN 180 SER 181 SER 182 GLY 183 LEU 184 TYR 185 SER 186 LEU 187 SER 188 SER 189 VAL 190 VAL 191 THR 192 VAL 193 PRO 194 SER 195 SER 196 SER 197 LEU 198 GLY 199 THR 200 GLN 201 THR 202 TYR 203 ILE 204 CYS 205 ASN 206 VAL 207 ASN 208 HIS 209 LYS 210 PRO 211 SER 212 ASN 213 THR 214 LYS 215 VAL 216 ASP 217 LYS 218 LYS 219 ALA 220 GLU 221 PRO 222 LYS 223
Unit 4	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLN 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 SER 30 SER 31 TYR 32 ALA 33 MET 34 SER 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 SER 49 ALA 50 ILE 51 SER 52 GLY 53 SER 54 GLY 55 GLY 56 SER 57 THR 58 TYR 59 TYR 60 ALA 61 ASP 62 SER 63 VAL 64 LYS 65 GLY 66 ARG 67 PHE 68 THR 69 ILE 70 SER 71 ARG 72 ASP 73 ASN 74 SER 75 LYS 76 ASN 77 ILE 78 LEU 79 TYR 80 LEU 81 GLN 82 MET 83 ASN 84 SER 85 LEU 86 LYS 87 ALA 88 GLU 89 ASP 90 THR 91 ALA 92 THR 93 TYR 94 TYR 95 CYS 96 ALA 97 ARG 98 ALA 99 VAL 100 VAL 101 PHE 102 SER 106 LYS 107 TYR 108 PHE 109 ASP 110 TYR 111 TRP 112 SER 113 GLN 114 GLY 115 THR 116 LEU 117 VAL 118 THR 119 VAL 120 SER 121 SER 122 ALA 123 SER 124 THR 125 LYS 126 GLY 127 PRO 128 SER 129 VAL 130 PHE 131 PRO 132 LEU 133 ALA 134 PRO 135 GLY 142 GLY 143 THR 144 ALA 145 ALA 146 LEU 147 GLY 148 CYS 149 LEU 150 VAL 151 LYS 152 ASP 153 TYR 154 PHE 155 PRO 156 GLU 157 PRO 158 VAL 159 THR 160 VAL 161 SER 162 TRP 163 ASN 164 SER 165 GLY 166 ALA 167 LEU 168 THR 169 SER 170 GLY 171 VAL 172 HIS 173 THR 174 PHE 175 PRO 176 ALA 177 VAL 178 LEU 179 GLN 180 SER 181 SER 182 GLY 183 LEU 184 TYR 185 SER 186 LEU 187 SER 188 SER 189 VAL 190 VAL 191 THR 192 VAL 193 PRO 194 SER 195 SER 196 SER 197 LEU 198 GLY 199 THR 200 GLN 201 THR 202 TYR 203 ILE 204 CYS 205 ASN 206 VAL 207 ASN 208 HIS 209 LYS 210 PRO 211 SER 212 ASN 213 THR 214 LYS 215 VAL 216 ASP 217 LYS 218 LYS 219 ALA 220 GLU 221 PRO 222
Unit 5	ASN 417 GLY 418 SER 419 TRP 420 HIS 421
Unit 6	GLY 418 SER 419 TRP 420 HIS 421

Ligands

Unit 7	GOL 301 SO4 302 SO4 303 SO4 304
Unit 8	GOL 301 SO4 302 SO4 303
Unit 9	GOL 301 SO4 302 SO4 303
Unit 10	GOL 301