5F9O - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING VH1-46 GERMLINE-DE BINDING SITE-DIRECTED ANTIBODY CH235.09 IN COMPLEX WITH HIV A/E 93TH057 GP120
• Keywords: ANTIBODY EVOLUTION HIV-1 BROADLY NEUTRALIZING CD4 BINDING SI IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5F9O	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	CLADE A/E 93TH057 HIV-1 GP120 CORE	G	341	2671	0
2	Protein	CH235.9 HEAVY CHAIN	H	220	1661	0
3	Protein	CH235.09 LIGHT CHAIN	L	210	1635	0
4	Ligand	CLADE A/E 93TH057 HIV-1 GP120 CORE	G	15	0	221
5	Water			460	0	460
total				1246	5967	681

Proteins

Unit 1	VAL 44 TRP 45 LYS 46 ASP 47 ALA 48 ASP 49 THR 50 THR 51 LEU 52 PHE 53 CYS 54 ALA 55 SER 56 ASP 57 ALA 58 LYS 59 ALA 60 HIS 61 GLU 62 THR 63 GLU 64 VAL 65 HIS 66 ASN 67 VAL 68 TRP 69 ALA 70 THR 71 HIS 72 ALA 73 CYS 74 VAL 75 PRO 76 THR 77 ASP 78 PRO 79 ASN 80 PRO 81 GLN 82 GLU 83 ILE 84 HIS 85 LEU 86 GLU 87 ASN 88 VAL 89 THR 90 GLU 91 ASN 92 PHE 93 ASN 94 MET 95 TRP 96 LYS 97 ASN 98 ASN 99 MET 100 VAL 101 GLU 102 GLN 103 MET 104 GLN 105 GLU 106 ASP 107 VAL 108 ILE 109 SER 110 LEU 111 TRP 112 ASP 113 GLN 114 SER 115 LEU 116 GLN 117 PRO 118 CYS 119 VAL 120 LYS 121 LEU 122 THR 123 GLY 124 GLY 125 SER 126 VAL 200 ILE 201 LYS 202 GLN 203 ALA 204 CYS 205 PRO 206 LYS 207 ILE 208 SER 209 PHE 210 ASP 211 PRO 212 ILE 213 PRO 214 ILE 215 HIS 216 TYR 217 CYS 218 THR 219 PRO 220 ALA 221 GLY 222 TYR 223 VAL 224 ILE 225 LEU 226 LYS 227 CYS 228 ASN 229 ASP 230 LYS 231 ASN 232 PHE 233 ASN 234 GLY 235 THR 236 GLY 237 PRO 238 CYS 239 LYS 240 ASN 241 VAL 242 SER 243 SER 244 VAL 245 GLN 246 CYS 247 THR 248 HIS 249 GLY 250 ILE 251 LYS 252 PRO 253 VAL 254 VAL 255 SER 256 THR 257 GLN 258 LEU 259 LEU 260 LEU 261 ASN 262 GLY 263 SER 264 LEU 265 ALA 266 GLU 267 GLU 268 GLU 269 ILE 270 ILE 271 ILE 272 ARG 273 SER 274 GLU 275 ASN 276 LEU 277 THR 278 ASN 279 ASN 280 ALA 281 LYS 282 THR 283 ILE 284 ILE 285 VAL 286 HIS 287 LEU 288 ASN 289 LYS 290 SER 291 VAL 292 GLU 293 ILE 294 ASN 295 CYS 296 THR 297 ARG 298 PRO 299 SER 300 ASP 325 ILE 326 ARG 327 LYS 328 ALA 329 TYR 330 CYS 331 GLU 332 ILE 333 ASN 334 GLY 335 THR 336 LYS 337 TRP 338 ASN 339 LYS 340 VAL 341 LEU 342 LYS 343 GLN 344 VAL 345 THR 346 GLU 347 LYS 348 LEU 349 LYS 350 GLU 351 HIS 352 PHE 353 ASN 354 ASN 355 LYS 357 THR 358 ILE 359 ILE 360 PHE 361 GLN 362 PRO 363 PRO 364 SER 365 GLY 366 GLY 367 ASP 368 LEU 369 GLU 370 ILE 371 THR 372 MET 373 HIS 374 HIS 375 PHE 376 ASN 377 CYS 378 ARG 379 GLY 380 GLU 381 PHE 382 PHE 383 TYR 384 CYS 385 ASN 386 THR 387 THR 388 GLN 389 LEU 390 PHE 391 ASN 392 ASN 393 THR 394 CYS 395 ILE 396 THR 406 MET 407 LYS 408 GLY 409 CYS 410 ASN 411 GLY 412 THR 413 ILE 414 THR 415 LEU 416 PRO 417 CYS 418 LYS 419 ILE 420 LYS 421 GLN 422 ILE 423 ILE 424 ASN 425 MET 426 TRP 427 GLN 428 GLY 429 THR 430 GLY 431 GLN 432 ALA 433 MET 434 TYR 435 ALA 436 PRO 437 PRO 438 ILE 439 ASP 440 GLY 441 LYS 442 ILE 443 ASN 444 CYS 445 VAL 446 SER 447 ASN 448 ILE 449 THR 450 GLY 451 ILE 452 LEU 453 LEU 454 THR 455 ARG 456 ASP 457 GLY 458 GLY 459 ALA 460 ASN 461 ASN 462 THR 463 SER 464 ASN 465 GLU 466 THR 467 PHE 468 ARG 469 PRO 470 GLY 471 GLY 472 GLY 473 ASN 474 ILE 475 LYS 476 ASP 477 ASN 478 TRP 479 ARG 480 SER 481 GLU 482 LEU 483 TYR 484 LYS 485 TYR 486 LYS 487 VAL 488 VAL 489 GLN 490 ILE 491
Unit 2	GLN 1 VAL 2 ARG 3 LEU 4 LEU 5 GLN 6 TYR 7 GLY 8 GLY 9 GLY 10 VAL 11 LYS 12 ARG 13 PRO 14 GLY 15 ALA 16 SER 17 MET 18 THR 19 ILE 20 SER 21 CYS 22 VAL 23 ALA 24 SER 25 GLY 26 TYR 27 ASN 28 PHE 29 ASN 30 ASP 31 TYR 32 TYR 33 ILE 34 HIS 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 LEU 47 MET 48 GLY 49 TRP 50 ILE 51 ASP 52 PRO 53 SER 54 GLY 55 GLY 56 ARG 57 THR 58 ASP 59 TYR 60 ALA 61 GLY 62 ALA 63 PHE 64 GLY 65 ASP 66 ARG 67 VAL 68 SER 69 MET 70 TYR 71 ARG 72 ASP 73 LYS 74 SER 75 MET 76 ASN 77 THR 78 LEU 79 TYR 80 MET 81 ASP 82 LEU 83 ARG 84 SER 85 LEU 86 ARG 87 SER 88 GLY 89 ASP 90 THR 91 ALA 92 MET 93 TYR 94 TYR 95 CYS 96 VAL 97 ARG 98 ASN 99 VAL 100 GLY 101 THR 102 ALA 103 GLY 104 SER 105 LEU 106 LEU 107 HIS 108 TYR 109 ASP 110 HIS 111 TRP 112 GLY 113 LEU 114 GLY 115 VAL 116 MET 117 VAL 118 THR 119 VAL 120 SER 121 SER 122 THR 123 LYS 124 THR 125 LYS 126 GLY 127 PRO 128 SER 129 VAL 130 PHE 131 PRO 132 LEU 133 ALA 134 PRO 135 SER 136 SER 137 SER 141 GLY 142 GLY 143 THR 144 ALA 145 ALA 146 LEU 147 GLY 148 CYS 149 LEU 150 VAL 151 LYS 152 ASP 153 TYR 154 PHE 155 PRO 156 GLU 157 PRO 158 VAL 159 THR 160 VAL 161 SER 162 TRP 163 ASN 164 SER 165 GLY 166 ALA 167 LEU 168 THR 169 SER 170 GLY 171 VAL 172 HIS 173 THR 174 PHE 175 PRO 176 ALA 177 VAL 178 LEU 179 GLN 180 SER 181 SER 182 GLY 183 LEU 184 TYR 185 SER 186 LEU 187 SER 188 SER 189 VAL 190 VAL 191 THR 192 VAL 193 PRO 194 SER 195 SER 196 SER 197 LEU 198 GLY 199 THR 200 GLN 201 THR 202 TYR 203 ILE 204 CYS 205 ASN 206 VAL 207 ASN 208 HIS 209 LYS 210 PRO 211 SER 212 ASN 213 THR 214 LYS 215 VAL 216 ASP 217 LYS 218 ARG 219 VAL 220 GLU 221 PRO 222 LYS 223
Unit 3	GLU 1 ILE 2 VAL 3 LEU 4 THR 5 GLN 6 SER 7 PRO 8 ALA 9 THR 10 LEU 11 SER 12 VAL 13 SER 14 PRO 15 GLY 16 GLU 17 ARG 18 VAL 19 THR 20 LEU 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 SER 28 VAL 29 ARG 30 ASN 31 ASN 32 LEU 33 ALA 34 TRP 35 TYR 36 ARG 37 GLN 38 LYS 39 ARG 40 GLY 41 GLN 42 ALA 43 PRO 44 ARG 45 LEU 46 LEU 47 ILE 48 TYR 49 GLY 50 ALA 51 SER 52 THR 53 ARG 54 ALA 55 THR 56 GLY 57 ILE 58 PRO 59 ALA 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 GLU 70 PHE 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 SER 77 MET 78 GLN 79 SER 80 GLU 81 ASP 82 PHE 83 ALA 84 VAL 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 TYR 91 ASN 92 ASN 93 TRP 94 TRP 95 THR 96 PHE 97 GLY 98 GLN 99 GLY 100 THR 101 LYS 102 VAL 103 GLU 104 ILE 105 LYS 106 ARG 107 THR 108 VAL 109 ALA 110 ALA 111 PRO 112 SER 113 VAL 114 PHE 115 ILE 116 PHE 117 PRO 118 PRO 119 SER 120 ASP 121 GLU 122 GLN 123 LEU 124 LYS 125 SER 126 GLY 127 THR 128 ALA 129 SER 130 VAL 131 VAL 132 CYS 133 LEU 134 LEU 135 ASN 136 ASN 137 PHE 138 TYR 139 PRO 140 ARG 141 GLU 142 ALA 143 LYS 144 VAL 145 GLN 146 TRP 147 LYS 148 VAL 149 ASP 150 ASN 151 ALA 152 LEU 153 GLN 154 SER 155 GLY 156 ASN 157 SER 158 GLN 159 GLU 160 SER 161 VAL 162 THR 163 GLU 164 GLN 165 ASP 166 SER 167 LYS 168 ASP 169 SER 170 THR 171 TYR 172 SER 173 LEU 174 SER 175 SER 176 THR 177 LEU 178 THR 179 LEU 180 SER 181 LYS 182 ALA 183 ASP 184 TYR 185 GLU 186 LYS 187 HIS 188 LYS 189 VAL 190 TYR 191 ALA 192 CYS 193 GLU 194 VAL 195 THR 196 HIS 197 GLN 198 GLY 199 LEU 200 SER 201 SER 202 PRO 203 VAL 204 THR 205 LYS 206 SER 207 PHE 208 ASN 209 ARG 210

Ligands

Unit 4

NAG 501 NAG 502 NAG 503 NAG 504 NAG 505 NAG 506 NAG 507 NAG 508 NAG 509 NAG 510 NAG 511 NAG 512 EPE 513 EPE 514 15P 515