5F9D - Sequence, Chains, Asymmetric and Biological Units

• Title: BLOOD GROUP ANTIGEN BINDING ADHESIN BABA OF HELICOBACTER PYL P436 IN COMPLEX WITH LEWIS B BLOOD GROUP B HEPTASACCHARIDE
• Keywords: ADHESIN, LECTIN, NANOBODY, COMPLEX, CELL ADHESION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5F9D	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein		A	417	3094	0
2	Protein	NANOBODY NB-ER19	C	114	873	0
3	Ligand		B	7	0	79
4	Water			18	0	18
total				556	3967	97

Proteins

Unit 1

GLU 34 ASN 35 LEU 36 SER 37 LYS 38 LEU 39 LEU 40 THR 41 ARG 42 TYR 43 SER 44 THR 45 LEU 46 ASN 47 THR 48 LEU 49 ILE 50 LYS 51 LEU 52 SER 53 ALA 54 ASP 55 PRO 56 SER 57 ALA 58 ILE 59 ASN 60 ALA 61 ALA 62 ARG 63 GLU 64 ASN 65 LEU 66 GLY 67 ALA 68 SER 69 ALA 70 LYS 71 ASN 72 LEU 73 ILE 74 GLY 75 ASP 76 THR 77 LYS 78 ASN 79 SER 80 PRO 81 ALA 82 TYR 83 GLN 84 ALA 85 VAL 86 LEU 87 LEU 88 ALA 89 ILE 90 ASN 91 ALA 92 ALA 93 VAL 94 GLY 95 PHE 96 TRP 97 ASN 98 VAL 99 LEU 100 GLY 101 TYR 102 ALA 103 THR 104 GLN 105 CYS 106 GLY 107 GLY 108 ASN 109 ALA 110 ASN 111 GLY 112 GLN 113 GLU 114 SER 115 THR 116 SER 117 SER 118 THR 119 THR 120 ILE 121 PHE 122 ASN 123 ASN 124 GLU 125 PRO 126 GLY 127 TYR 128 ARG 129 SER 130 THR 131 SER 132 ILE 133 THR 134 CYS 135 SER 136 LEU 137 ASN 138 ARG 139 TYR 140 LYS 141 PRO 142 GLY 143 TYR 144 TYR 145 GLY 146 PRO 147 MET 148 SER 149 ILE 150 GLU 151 ASN 152 PHE 153 LYS 154 LYS 155 LEU 156 ASN 157 GLU 158 ALA 159 TYR 160 GLN 161 ILE 162 LEU 163 GLN 164 THR 165 ALA 166 LEU 167 ASN 168 LYS 169 GLY 170 LEU 171 PRO 172 ALA 173 LEU 174 LYS 175 GLU 176 ASN 177 ASN 178 GLY 179 THR 180 ILE 181 ASN 182 VAL 183 GLU 184 TYR 185 THR 186 TYR 187 THR 188 CYS 189 SER 190 GLY 191 GLY 192 GLY 193 ASN 194 THR 195 ASN 196 CYS 197 ASP 198 PRO 199 SER 200 LEU 201 PHE 202 GLY 203 ILE 204 GLY 205 GLY 206 ASP 207 GLY 208 ARG 209 ASN 210 GLY 211 GLY 212 SER 213 VAL 214 THR 215 LYS 216 THR 217 GLN 218 THR 219 ILE 220 ASP 221 GLY 222 LYS 223 GLN 224 VAL 225 ASN 226 THR 227 THR 228 ILE 229 SER 230 SER 231 LYS 232 VAL 233 VAL 234 GLN 235 PRO 236 PRO 237 HIS 238 SER 239 ALA 240 ALA 241 TYR 242 THR 243 GLU 244 ILE 245 THR 246 ASN 247 ALA 248 LEU 249 ASN 250 GLY 251 VAL 252 PRO 253 ASP 254 SER 255 ALA 256 GLN 257 ALA 258 LEU 259 LEU 260 ALA 261 GLN 262 ALA 263 SER 264 THR 265 LEU 266 ILE 267 ASN 268 THR 269 ILE 270 ASN 271 THR 272 ALA 273 CYS 274 PRO 275 TYR 276 PHE 277 SER 278 VAL 279 THR 280 ASN 281 GLY 284 GLY 285 PRO 286 GLN 287 MET 288 GLU 289 PRO 290 THR 291 ARG 292 GLY 293 LYS 294 LEU 295 CYS 296 GLY 297 PHE 298 THR 299 GLU 300 GLU 301 ILE 302 SER 303 ALA 304 ILE 305 GLN 306 LYS 307 MET 308 ILE 309 THR 310 ASP 311 ALA 312 GLN 313 GLU 314 LEU 315 VAL 316 ASN 317 GLN 318 THR 319 SER 320 VAL 321 ILE 322 ASN 323 GLU 324 HIS 325 GLU 326 GLN 327 SER 328 THR 329 PRO 330 VAL 331 GLY 332 GLY 333 ASN 334 ASN 335 GLY 336 LYS 337 PRO 338 PHE 339 ASN 340 PRO 341 PHE 342 THR 343 ASP 344 ALA 345 SER 346 PHE 347 ALA 348 GLN 349 GLY 350 MET 351 LEU 352 ALA 353 ASN 354 ALA 355 SER 356 ALA 357 GLN 358 ALA 359 LYS 360 MET 361 LEU 362 ASN 363 LEU 364 ALA 365 HIS 366 GLN 367 VAL 368 GLY 369 GLN 370 THR 371 ILE 372 ASN 373 PRO 374 ASP 375 ASN 376 LEU 377 THR 378 GLY 379 THR 380 PHE 381 LYS 382 ASN 383 PHE 384 VAL 385 THR 386 GLY 387 PHE 388 LEU 389 ALA 390 THR 391 CYS 392 ASN 393 ASN 394 LYS 395 SER 396 GLY 405 SER 406 PRO 407 PRO 408 GLY 409 THR 410 VAL 411 THR 412 THR 413 GLN 414 THR 415 PHE 416 ALA 417 SER 418 GLY 419 CYS 420 ALA 421 TYR 422 VAL 423 GLU 424 GLN 425 THR 426 ILE 427 THR 428 ASN 429 LEU 430 ASN 431 ASN 432 SER 433 ILE 434 ALA 435 HIS 436 PHE 437 GLY 438 THR 439 GLN 440 GLU 441 GLN 442 GLN 443 ILE 444 GLN 445 GLN 446 ALA 447 GLU 448 ASN 449 ILE 450 ALA 451 ASP 452 THR 453 LEU 454 VAL 455 ASN 456 PHE 457 GLY 458 SER 459 HIS 460

Unit 2

VAL 3 GLN 4 LEU 5 GLN 6 GLU 7 SER 8 GLY 9 GLY 10 GLY 11 LEU 12 VAL 13 GLN 14 PRO 15 GLY 16 GLY 17 SER 18 LEU 19 ARG 20 LEU 21 SER 22 CYS 23 ALA 24 ALA 25 SER 26 GLY 27 SER 28 ILE 29 PHE 30 SER 31 GLY 32 ASN 33 VAL 34 MET 35 GLY 36 TRP 37 TYR 38 ARG 39 GLN 40 ALA 41 PRO 42 GLY 43 LYS 44 LEU 45 ARG 46 GLU 47 TRP 48 VAL 49 ALA 50 ALA 51 ILE 52 THR 53 PRO 54 GLN 55 GLY 56 VAL 57 PRO 58 ASN 59 TYR 60 ALA 61 ASP 62 SER 63 VAL 64 LYS 65 GLY 66 ARG 67 PHE 68 THR 69 ILE 70 SER 71 ARG 72 ASP 73 ASN 74 ALA 75 LYS 76 ASN 77 MET 78 LEU 79 TYR 80 LEU 81 GLN 82 MET 83 SER 84 SER 85 LEU 86 LYS 87 PRO 88 GLU 89 ASP 90 THR 91 ALA 92 LEU 93 TYR 94 TYR 95 CYS 96 ASN 97 ARG 98 LEU 99 PRO 100 ASN 101 TYR 102 ARG 103 SER 104 TRP 105 GLY 106 GLN 107 GLY 108 THR 109 GLN 110 VAL 111 THR 112 VAL 113 SER 114 SER 115 HIS 116

Ligands

Unit 3

BGC 1 GAL 2 NAG 3 GAL 4 FUC 5 GLA 6 FUC 7