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Sequence, Chains, Asymmetric and Biological Units

Title ENTEROVIRUS 71 POLYMERASE ELONGATION COMPLEX (C3S4/5 FORM)
Keywords POLYMERASE-RNA COMPLEX, ELONGATION, NUCLEOTIDE ADDITION CYCL TRANSFERASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5F8M     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GENOME POLYPROTEIN  A 462 3681 0
2  RNA    B 12 248 0
3  RNA    C 10 217 0
4  Ligand   GENOME POLYPROTEIN  A 5 0 17
5  Ligand   RNA (35-MER)  B 1 0 6
6 Water     78 0 78
total       568 4146 101

Proteins
Unit 1 GLY1 GLU2 ILE3 GLN4 TRP5 VAL6 LYS7 PRO8 ASN9 LYS10 GLU11 THR12 GLY13 ARG14 LEU15 ASN16 ILE17 ASN18 GLY19 PRO20 THR21 ARG22 THR23 LYS24 LEU25 GLU26 PRO27 SER28 VAL29 PHE30 HIS31 ASP32 VAL33 PHE34 GLU35 GLY36 ASN37 LYS38 GLU39 PRO40 ALA41 VAL42 LEU43 HIS44 SER45 LYS46 ASP47 PRO48 ARG49 LEU50 GLU51 VAL52 ASP53 PHE54 GLU55 GLN56 ALA57 LEU58 PHE59 SER60 LYS61 TYR62 VAL63 GLY64 ASN65 THR66 LEU67 TYR68 GLU69 PRO70 ASP71 GLU72 TYR73 ILE74 LYS75 GLU76 ALA77 ALA78 LEU79 HIS80 TYR81 ALA82 ASN83 GLN84 LEU85 LYS86 GLN87 LEU88 ASP89 ILE90 ASP91 THR92 SER93 GLN94 MET95 SER96 MET97 GLU98 GLU99 ALA100 CYS101 TYR102 GLY103 THR104 GLU105 ASN106 LEU107 GLU108 ALA109 ILE110 ASP111 LEU112 HIS113 THR114 SER115 ALA116 GLY117 TYR118 PRO119 TYR120 SER121 ALA122 LEU123 GLY124 ILE125 LYS126 LYS127 ARG128 ASP129 ILE130 LEU131 ASP132 SER133 THR134 THR135 ARG136 ASP137 VAL138 SER139 LYS140 MET141 LYS142 PHE143 TYR144 MET145 ASP146 LYS147 TYR148 GLY149 LEU150 ASP151 LEU152 PRO153 TYR154 SER155 THR156 TYR157 VAL158 LYS159 ASP160 GLU161 LEU162 ARG163 SER164 ILE165 ASP166 LYS167 ILE168 LYS169 LYS170 GLY171 LYS172 SER173 ARG174 LEU175 ILE176 GLU177 ALA178 SER179 SER180 LEU181 ASN182 ASP183 SER184 VAL185 TYR186 LEU187 ARG188 MET189 THR190 PHE191 GLY192 HIS193 LEU194 TYR195 GLU196 THR197 PHE198 HIS199 ALA200 ASN201 PRO202 GLY203 THR204 VAL205 THR206 GLY207 SER208 ALA209 VAL210 GLY211 CYS212 ASN213 PRO214 ASP215 THR216 PHE217 TRP218 SER219 LYS220 LEU221 PRO222 ILE223 LEU224 LEU225 PRO226 GLY227 SER228 LEU229 PHE230 ALA231 PHE232 ASP233 TYR234 SER235 GLY236 TYR237 ASP238 ALA239 SER240 LEU241 SER242 PRO243 VAL244 TRP245 PHE246 ARG247 ALA248 LEU249 GLU250 LEU251 VAL252 LEU253 ARG254 GLU255 ILE256 GLY257 TYR258 SER259 GLU260 GLU261 ALA262 VAL263 SER264 LEU265 VAL266 GLU267 GLY268 ILE269 ASN270 HIS271 THR272 HIS273 HIS274 VAL275 TYR276 ARG277 ASN278 LYS279 THR280 TYR281 CYS282 VAL283 LEU284 GLY285 GLY286 MET287 PRO288 SER289 GLY290 CYS291 SER292 GLY293 THR294 SER295 ILE296 PHE297 ASN298 SER299 MET300 ILE301 ASN302 ASN303 ILE304 ILE305 ILE306 ARG307 ALA308 LEU309 LEU310 ILE311 LYS312 THR313 PHE314 LYS315 GLY316 ILE317 ASP318 LEU319 ASP320 GLU321 LEU322 ASN323 MET324 VAL325 ALA326 TYR327 GLY328 ASP329 ASP330 VAL331 LEU332 ALA333 SER334 TYR335 PRO336 PHE337 PRO338 ILE339 ASP340 CYS341 LEU342 GLU343 LEU344 ALA345 ARG346 THR347 GLY348 LYS349 GLU350 TYR351 GLY352 LEU353 THR354 MET355 THR356 PRO357 ALA358 ASP359 LYS360 SER361 PRO362 CYS363 PHE364 ASN365 GLU366 VAL367 ASN368 TRP369 ASP370 ASN371 ALA372 THR373 PHE374 LEU375 LYS376 ARG377 GLY378 PHE379 LEU380 PRO381 ASP382 GLU383 GLN384 PHE385 PRO386 PHE387 LEU388 ILE389 HIS390 PRO391 THR392 MET393 PRO394 MET395 LYS396 GLU397 ILE398 HIS399 GLU400 SER401 ILE402 ARG403 TRP404 THR405 LYS406 ASP407 ALA408 ARG409 ASN410 THR411 GLN412 ASP413 HIS414 VAL415 ARG416 SER417 LEU418 CYS419 LEU420 LEU421 ALA422 TRP423 HIS424 ASN425 GLY426 LYS427 GLN428 GLU429 TYR430 GLU431 LYS432 PHE433 VAL434 SER435 ALA436 ILE437 ARG438 SER439 VAL440 PRO441 VAL442 GLY443 LYS444 ALA445 LEU446 ALA447 ILE448 PRO449 ASN450 TYR451 GLU452 ASN453 LEU454 ARG455 ARG456 ASN457 TRP458 LEU459 GLU460 LEU461 PHE462

Nucleic acids
Unit 2 C599 A600 G601 G602 U603 C604 U605 C606 U607 C608 U609 C610
Unit 3 A693 G694 A695 G696 A697 G698 A699 C700 C701 U702

Ligands
Unit 4 MG1001 MG1002 ZN1003 SO41004 POP1005
Unit 5 GOL701

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany