5F7M - Sequence, Chains, Asymmetric and Biological Units

• Title: BLOOD GROUP ANTIGEN BINDING ADHESIN BABA OF HELICOBACTER PYL 17875 IN COMPLEX WITH BLOOD GROUP H LEWIS B HEXASACCHARIDE
• Keywords: ADHESIN, LECTIN, NANOBODY, COMPLEX, CELL ADHESION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5F7M	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein		A	419	3114	0
2	Protein		B	420	3124	0
3	Protein	NANOBODY NB-ER19	C	113	863	0
4	Protein	NANOBODY NB-ER19	D	114	873	0
5	Ligand		E	6	0	68
6	Ligand		F	6	0	68
7	Water			150	0	150
total				1228	7974	286

Proteins

Unit 1	ASN 35 LEU 36 SER 37 LYS 38 LEU 39 LEU 40 THR 41 ARG 42 TYR 43 SER 44 THR 45 LEU 46 ASN 47 THR 48 LEU 49 ILE 50 LYS 51 LEU 52 SER 53 ALA 54 ASP 55 PRO 56 SER 57 ALA 58 ILE 59 ASN 60 ALA 61 ALA 62 ARG 63 GLU 64 ASN 65 LEU 66 GLY 67 ALA 68 SER 69 ALA 70 LYS 71 ASN 72 LEU 73 ILE 74 GLY 75 ASP 76 THR 77 LYS 78 ASN 79 SER 80 PRO 81 ALA 82 TYR 83 GLN 84 ALA 85 VAL 86 LEU 87 LEU 88 ALA 89 ILE 90 ASN 91 ALA 92 ALA 93 VAL 94 GLY 95 PHE 96 TRP 97 ASN 98 VAL 99 LEU 100 GLY 101 TYR 102 ALA 103 THR 104 GLN 105 CYS 106 GLY 107 GLY 108 ASN 109 ALA 110 ASN 111 GLY 112 GLN 113 GLU 114 SER 115 THR 116 SER 117 SER 118 THR 119 THR 120 ILE 121 PHE 122 ASN 123 ASN 124 GLU 125 PRO 126 GLY 127 TYR 128 ARG 129 SER 130 THR 131 SER 132 ILE 133 THR 134 CYS 135 SER 136 LEU 137 ASN 138 ARG 139 TYR 140 LYS 141 PRO 142 GLY 143 TYR 144 TYR 145 GLY 146 PRO 147 MET 148 SER 149 ILE 150 GLU 151 ASN 152 PHE 153 LYS 154 LYS 155 LEU 156 ASN 157 GLU 158 ALA 159 TYR 160 GLN 161 ILE 162 LEU 163 GLN 164 THR 165 ALA 166 LEU 167 ASN 168 LYS 169 GLY 170 LEU 171 PRO 172 ALA 173 LEU 174 LYS 175 GLU 176 ASN 177 ASN 178 GLY 179 THR 180 VAL 181 SER 182 VAL 183 THR 184 TYR 185 THR 186 TYR 187 THR 188 CYS 189 SER 190 GLY 191 GLU 192 GLY 193 ASN 194 ASP 195 ASN 196 CYS 197 SER 198 LYS 199 LYS 200 ALA 201 THR 202 GLY 203 VAL 204 SER 205 ASP 206 GLN 207 ASN 208 GLY 209 GLY 210 THR 211 LYS 212 THR 213 LYS 214 THR 215 GLN 216 THR 217 ILE 218 ASP 219 GLY 220 LYS 221 THR 222 VAL 223 THR 224 THR 225 THR 226 ILE 227 SER 228 SER 229 LYS 230 VAL 231 VAL 232 ASP 233 SER 234 GLN 235 ALA 236 LYS 237 GLY 238 ASN 239 THR 240 THR 241 ARG 242 VAL 243 SER 244 TYR 245 THR 246 GLU 247 ILE 248 THR 249 ASN 250 LYS 251 LEU 252 ASP 253 GLY 254 VAL 255 PRO 256 ASP 257 SER 258 ALA 259 GLN 260 ALA 261 LEU 262 LEU 263 ALA 264 GLN 265 ALA 266 SER 267 THR 268 LEU 269 ILE 270 ASN 271 THR 272 ILE 273 ASN 274 THR 275 ALA 276 CYS 277 PRO 278 TYR 279 PHE 280 SER 281 VAL 282 THR 283 ASN 284 LYS 285 SER 286 GLY 287 GLY 288 PRO 289 GLN 290 MET 291 GLU 292 PRO 293 THR 294 ARG 295 GLY 296 LYS 297 LEU 298 CYS 299 GLY 300 PHE 301 THR 302 GLU 303 GLU 304 ILE 305 SER 306 ALA 307 ILE 308 GLN 309 LYS 310 MET 311 ILE 312 THR 313 ASP 314 ALA 315 GLN 316 GLU 317 LEU 318 VAL 319 ASN 320 GLN 321 THR 322 SER 323 VAL 324 ILE 325 ASN 326 GLU 327 HIS 328 GLU 329 GLN 330 SER 331 THR 332 PRO 333 VAL 334 GLY 335 GLY 336 ASN 337 ASN 338 GLY 339 LYS 340 PRO 341 PHE 342 ASN 343 PRO 344 PHE 345 THR 346 ASP 347 ALA 348 SER 349 PHE 350 ALA 351 GLN 352 GLY 353 MET 354 LEU 355 ALA 356 ASN 357 ALA 358 SER 359 ALA 360 GLN 361 ALA 362 LYS 363 MET 364 LEU 365 ASN 366 LEU 367 ALA 368 HIS 369 GLN 370 VAL 371 GLY 372 GLN 373 THR 374 ILE 375 ASN 376 PRO 377 ASP 378 ASN 379 LEU 380 THR 381 GLY 382 THR 383 PHE 384 LYS 385 ASN 386 PHE 387 VAL 388 THR 389 GLY 390 PHE 391 LEU 392 ALA 393 THR 394 CYS 395 ASN 396 ASN 397 LYS 398 GLY 408 SER 409 PRO 410 PRO 411 GLY 412 THR 413 VAL 414 THR 415 THR 416 GLN 417 THR 418 PHE 419 ALA 420 SER 421 GLY 422 CYS 423 ALA 424 TYR 425 VAL 426 GLU 427 GLN 428 THR 429 ILE 430 THR 431 ASN 432 LEU 433 ASN 434 ASN 435 SER 436 ILE 437 ALA 438 HIS 439 PHE 440 GLY 441 THR 442 GLN 443 GLU 444 GLN 445 GLN 446 ILE 447 GLN 448 GLN 449 ALA 450 GLU 451 ASN 452 ILE 453 ALA 454 ASP 455 THR 456 LEU 457 VAL 458 ASN 459 PHE 460 GLY 461 SER 462
Unit 2	ASN 35 LEU 36 SER 37 LYS 38 LEU 39 LEU 40 THR 41 ARG 42 TYR 43 SER 44 THR 45 LEU 46 ASN 47 THR 48 LEU 49 ILE 50 LYS 51 LEU 52 SER 53 ALA 54 ASP 55 PRO 56 SER 57 ALA 58 ILE 59 ASN 60 ALA 61 ALA 62 ARG 63 GLU 64 ASN 65 LEU 66 GLY 67 ALA 68 SER 69 ALA 70 LYS 71 ASN 72 LEU 73 ILE 74 GLY 75 ASP 76 THR 77 LYS 78 ASN 79 SER 80 PRO 81 ALA 82 TYR 83 GLN 84 ALA 85 VAL 86 LEU 87 LEU 88 ALA 89 ILE 90 ASN 91 ALA 92 ALA 93 VAL 94 GLY 95 PHE 96 TRP 97 ASN 98 VAL 99 LEU 100 GLY 101 TYR 102 ALA 103 THR 104 GLN 105 CYS 106 GLY 107 GLY 108 ASN 109 ALA 110 ASN 111 GLY 112 GLN 113 GLU 114 SER 115 THR 116 SER 117 SER 118 THR 119 THR 120 ILE 121 PHE 122 ASN 123 ASN 124 GLU 125 PRO 126 GLY 127 TYR 128 ARG 129 SER 130 THR 131 SER 132 ILE 133 THR 134 CYS 135 SER 136 LEU 137 ASN 138 ARG 139 TYR 140 LYS 141 PRO 142 GLY 143 TYR 144 TYR 145 GLY 146 PRO 147 MET 148 SER 149 ILE 150 GLU 151 ASN 152 PHE 153 LYS 154 LYS 155 LEU 156 ASN 157 GLU 158 ALA 159 TYR 160 GLN 161 ILE 162 LEU 163 GLN 164 THR 165 ALA 166 LEU 167 ASN 168 LYS 169 GLY 170 LEU 171 PRO 172 ALA 173 LEU 174 LYS 175 GLU 176 ASN 177 ASN 178 GLY 179 THR 180 VAL 181 SER 182 VAL 183 THR 184 TYR 185 THR 186 TYR 187 THR 188 CYS 189 SER 190 GLY 191 GLU 192 GLY 193 ASN 194 ASP 195 ASN 196 CYS 197 SER 198 LYS 199 LYS 200 ALA 201 THR 202 GLY 203 VAL 204 SER 205 ASP 206 GLN 207 ASN 208 GLY 209 GLY 210 THR 211 LYS 212 THR 213 LYS 214 THR 215 GLN 216 THR 217 ILE 218 ASP 219 GLY 220 LYS 221 THR 222 VAL 223 THR 224 THR 225 THR 226 ILE 227 SER 228 SER 229 LYS 230 VAL 231 VAL 232 ASP 233 SER 234 GLN 235 ALA 236 LYS 237 GLY 238 ASN 239 THR 240 THR 241 ARG 242 VAL 243 SER 244 TYR 245 THR 246 GLU 247 ILE 248 THR 249 ASN 250 LYS 251 LEU 252 ASP 253 GLY 254 VAL 255 PRO 256 ASP 257 SER 258 ALA 259 GLN 260 ALA 261 LEU 262 LEU 263 ALA 264 GLN 265 ALA 266 SER 267 THR 268 LEU 269 ILE 270 ASN 271 THR 272 ILE 273 ASN 274 THR 275 ALA 276 CYS 277 PRO 278 TYR 279 PHE 280 SER 281 VAL 282 THR 283 ASN 284 LYS 285 SER 286 GLY 287 GLY 288 PRO 289 GLN 290 MET 291 GLU 292 PRO 293 THR 294 ARG 295 GLY 296 LYS 297 LEU 298 CYS 299 GLY 300 PHE 301 THR 302 GLU 303 GLU 304 ILE 305 SER 306 ALA 307 ILE 308 GLN 309 LYS 310 MET 311 ILE 312 THR 313 ASP 314 ALA 315 GLN 316 GLU 317 LEU 318 VAL 319 ASN 320 GLN 321 THR 322 SER 323 VAL 324 ILE 325 ASN 326 GLU 327 HIS 328 GLU 329 GLN 330 SER 331 THR 332 PRO 333 VAL 334 GLY 335 GLY 336 ASN 337 ASN 338 GLY 339 LYS 340 PRO 341 PHE 342 ASN 343 PRO 344 PHE 345 THR 346 ASP 347 ALA 348 SER 349 PHE 350 ALA 351 GLN 352 GLY 353 MET 354 LEU 355 ALA 356 ASN 357 ALA 358 SER 359 ALA 360 GLN 361 ALA 362 LYS 363 MET 364 LEU 365 ASN 366 LEU 367 ALA 368 HIS 369 GLN 370 VAL 371 GLY 372 GLN 373 THR 374 ILE 375 ASN 376 PRO 377 ASP 378 ASN 379 LEU 380 THR 381 GLY 382 THR 383 PHE 384 LYS 385 ASN 386 PHE 387 VAL 388 THR 389 GLY 390 PHE 391 LEU 392 ALA 393 THR 394 CYS 395 ASN 396 ASN 397 LYS 398 GLY 408 SER 409 PRO 410 PRO 411 GLY 412 THR 413 VAL 414 THR 415 THR 416 GLN 417 THR 418 PHE 419 ALA 420 SER 421 GLY 422 CYS 423 ALA 424 TYR 425 VAL 426 GLU 427 GLN 428 THR 429 ILE 430 THR 431 ASN 432 LEU 433 ASN 434 ASN 435 SER 436 ILE 437 ALA 438 HIS 439 PHE 440 GLY 441 THR 442 GLN 443 GLU 444 GLN 445 GLN 446 ILE 447 GLN 448 GLN 449 ALA 450 GLU 451 ASN 452 ILE 453 ALA 454 ASP 455 THR 456 LEU 457 VAL 458 ASN 459 PHE 460 GLY 461 SER 462 HIS 463
Unit 3	VAL 3 GLN 4 LEU 5 GLN 6 GLU 7 SER 8 GLY 9 GLY 10 GLY 11 LEU 12 VAL 13 GLN 14 PRO 15 GLY 16 GLY 17 SER 18 LEU 19 ARG 20 LEU 21 SER 22 CYS 23 ALA 24 ALA 25 SER 26 GLY 27 SER 28 ILE 29 PHE 30 SER 31 GLY 32 ASN 33 VAL 34 MET 35 GLY 36 TRP 37 TYR 38 ARG 39 GLN 40 ALA 41 PRO 42 GLY 43 LYS 44 LEU 45 ARG 46 GLU 47 TRP 48 VAL 49 ALA 50 ALA 51 ILE 52 THR 53 PRO 54 GLN 55 GLY 56 VAL 57 PRO 58 ASN 59 TYR 60 ALA 61 ASP 62 SER 63 VAL 64 LYS 65 GLY 66 ARG 67 PHE 68 THR 69 ILE 70 SER 71 ARG 72 ASP 73 ASN 74 ALA 75 LYS 76 ASN 77 MET 78 LEU 79 TYR 80 LEU 81 GLN 82 MET 83 SER 84 SER 85 LEU 86 LYS 87 PRO 88 GLU 89 ASP 90 THR 91 ALA 92 LEU 93 TYR 94 TYR 95 CYS 96 ASN 97 ARG 98 LEU 99 PRO 100 ASN 101 TYR 102 ARG 103 SER 104 TRP 105 GLY 106 GLN 107 GLY 108 THR 109 GLN 110 VAL 111 THR 112 VAL 113 SER 114 SER 115
Unit 4	VAL 3 GLN 4 LEU 5 GLN 6 GLU 7 SER 8 GLY 9 GLY 10 GLY 11 LEU 12 VAL 13 GLN 14 PRO 15 GLY 16 GLY 17 SER 18 LEU 19 ARG 20 LEU 21 SER 22 CYS 23 ALA 24 ALA 25 SER 26 GLY 27 SER 28 ILE 29 PHE 30 SER 31 GLY 32 ASN 33 VAL 34 MET 35 GLY 36 TRP 37 TYR 38 ARG 39 GLN 40 ALA 41 PRO 42 GLY 43 LYS 44 LEU 45 ARG 46 GLU 47 TRP 48 VAL 49 ALA 50 ALA 51 ILE 52 THR 53 PRO 54 GLN 55 GLY 56 VAL 57 PRO 58 ASN 59 TYR 60 ALA 61 ASP 62 SER 63 VAL 64 LYS 65 GLY 66 ARG 67 PHE 68 THR 69 ILE 70 SER 71 ARG 72 ASP 73 ASN 74 ALA 75 LYS 76 ASN 77 MET 78 LEU 79 TYR 80 LEU 81 GLN 82 MET 83 SER 84 SER 85 LEU 86 LYS 87 PRO 88 GLU 89 ASP 90 THR 91 ALA 92 LEU 93 TYR 94 TYR 95 CYS 96 ASN 97 ARG 98 LEU 99 PRO 100 ASN 101 TYR 102 ARG 103 SER 104 TRP 105 GLY 106 GLN 107 GLY 108 THR 109 GLN 110 VAL 111 THR 112 VAL 113 SER 114 SER 115 HIS 116

Ligands

Unit 5	BGC 1 GAL 2 NAG 3 GAL 4 FUC 5 FUC 6
Unit 6	BGC 1 GAL 2 NAG 3 GAL 4 FUC 5 FUC 6