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Sequence, Chains, Asymmetric and Biological Units

Title X-RAY STRUCTURE OF ROQUIN ROQ DOMAIN IN COMPLEX WITH OX40 HE RNA MOTIF
Keywords ROQ DOMAIN, WINGED-HELIX DOMAIN, RNA BINDING PROTEIN, OX40 M
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5F5H     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ROQUIN-1  A 148 1181 0
2  Protein   ROQUIN-1  B 152 1214 0
3  RNA    C 21 444 0
4  RNA    D 21 444 0
5  Ligand   ROQUIN-1  A 1 0 6
6 Water     99 0 99
total       442 3283 105
Proteins
Unit 1 GLN178 LEU179 SER180 SER181 ASN182 LEU183 TRP184 ALA185 ALA186 VAL187 ARG188 ALA189 ARG190 GLY191 CYS192 GLN193 PHE194 LEU195 GLY196 PRO197 ALA198 MET199 GLN200 GLU201 GLU202 ALA203 LEU204 LYS205 LEU206 VAL207 LEU208 LEU209 ALA210 LEU211 GLU212 ASP213 GLY214 SER215 ALA216 LEU217 SER218 ARG219 LYS220 VAL221 LEU222 VAL223 LEU224 PHE225 VAL226 VAL227 GLN228 ARG229 LEU230 GLU231 PRO232 ARG233 PHE234 PRO235 GLN236 ALA237 SER238 LYS239 THR240 SER241 ILE242 GLY243 HIS244 VAL245 VAL246 GLN247 LEU248 LEU249 TYR250 ARG251 ALA252 SER253 CYS254 PHE255 LYS256 VAL257 THR258 LYS259 ARG260 ASP261 GLU262 ASP263 SER264 SER265 LEU266 MET267 GLN268 LEU269 LYS270 GLU271 GLU272 PHE273 ARG274 THR275 TYR276 GLU277 ALA278 LEU279 ARG280 ARG281 GLU282 HIS283 ASP284 SER285 GLN286 ILE287 VAL288 GLN289 ILE290 ALA291 MET292 GLU293 ALA294 GLY295 LEU296 ARG297 ILE298 ALA299 PRO300 ASP301 GLN302 TRP303 SER304 SER305 LEU306 LEU307 TYR308 GLY309 ASP310 GLN311 SER312 HIS313 LYS314 SER315 HIS316 MET317 GLN318 SER319 ILE320 ILE321 ASP322 LYS323 LEU324 GLN325
Unit 2 GLN174 ASN175 PRO176 GLN177 GLN178 LEU179 SER180 SER181 ASN182 LEU183 TRP184 ALA185 ALA186 VAL187 ARG188 ALA189 ARG190 GLY191 CYS192 GLN193 PHE194 LEU195 GLY196 PRO197 ALA198 MET199 GLN200 GLU201 GLU202 ALA203 LEU204 LYS205 LEU206 VAL207 LEU208 LEU209 ALA210 LEU211 GLU212 ASP213 GLY214 SER215 ALA216 LEU217 SER218 ARG219 LYS220 VAL221 LEU222 VAL223 LEU224 PHE225 VAL226 VAL227 GLN228 ARG229 LEU230 GLU231 PRO232 ARG233 PHE234 PRO235 GLN236 ALA237 SER238 LYS239 THR240 SER241 ILE242 GLY243 HIS244 VAL245 VAL246 GLN247 LEU248 LEU249 TYR250 ARG251 ALA252 SER253 CYS254 PHE255 LYS256 VAL257 THR258 LYS259 ARG260 ASP261 GLU262 ASP263 SER264 SER265 LEU266 MET267 GLN268 LEU269 LYS270 GLU271 GLU272 PHE273 ARG274 THR275 TYR276 GLU277 ALA278 LEU279 ARG280 ARG281 GLU282 HIS283 ASP284 SER285 GLN286 ILE287 VAL288 GLN289 ILE290 ALA291 MET292 GLU293 ALA294 GLY295 LEU296 ARG297 ILE298 ALA299 PRO300 ASP301 GLN302 TRP303 SER304 SER305 LEU306 LEU307 TYR308 GLY309 ASP310 GLN311 SER312 HIS313 LYS314 SER315 HIS316 MET317 GLN318 SER319 ILE320 ILE321 ASP322 LYS323 LEU324 GLN325
Nucleic acids
Unit 3 C2 C3 A4 C5 A6 C7 C8 G9 U10 U11 C12 U13 A14 G15 G16 U17 G18 C19 U20 G21 G22
Unit 4 C2 C3 A4 C5 A6 C7 C8 G9 U10 U11 C12 U13 A14 G15 G16 U17 G18 C19 U20 G21 G22
Ligands
Unit 5 GOL401
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany