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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF DBP IN COMPLEX WITH INHIBITORY MONOCLON ANTIBODY 2D10
Keywords PLASMODIUM, VIVAX, DUFFY BINDING PROTEIN, DBP, ANTIBODY, MAL SCFV, NEUTRALIZING, INTERACTION, IMMUNE, BLOCKING, INVASION VACCINE, THERAPEUTIC, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5F3J     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DUFFY RECEPTOR  A 251 2104 0
2  Protein   DUFFY RECEPTOR  B 249 2101 0
3  Protein   ANTIBODY 2D10 SINGLE CHAIN VARIABLE FRAGMENT  C 228 1756 0
4  Protein   ANTIBODY 2D10 SINGLE CHAIN VARIABLE FRAGMENT  D 228 1758 0
total       956 7719 0
Proteins
Unit 1 TYR219 LYS220 ARG221 LYS222 ARG223 ARG224 GLU225 ARG226 ASP227 TRP228 ASP229 CYS230 ASN231 THR232 LYS233 LYS234 ASP235 VAL236 CYS237 ILE238 PRO239 ASP240 ARG241 ARG242 TYR243 GLN244 LEU245 CYS246 MET247 LYS248 GLU249 LEU250 THR251 ASN252 PHE267 ARG268 LYS269 LEU270 TYR271 LEU272 LYS273 ARG274 LYS275 LEU276 ILE277 TYR278 ASP279 ALA280 ALA281 VAL282 GLU283 GLY284 ASP285 LEU286 LEU287 LEU288 LYS289 LEU290 ASN291 ASN292 TYR293 ARG294 TYR295 ASN296 LYS297 ASP298 PHE299 CYS300 LYS301 ASP302 ILE303 ARG304 TRP305 SER306 LEU307 GLY308 ASP309 PHE310 GLY311 ASP312 ILE313 ILE314 MET315 GLY316 THR317 ASP318 MET319 GLU320 GLY321 ILE322 GLY323 TYR324 SER325 LYS326 VAL327 VAL328 GLU329 ASN330 ASN331 LEU332 ARG333 SER334 ILE335 PHE336 GLY337 THR338 ASP339 GLU340 LYS341 ALA342 GLN343 GLN344 ARG345 ARG346 LYS347 GLN348 TRP349 TRP350 ASN351 GLU352 SER353 LYS354 ALA355 GLN356 ILE357 TRP358 THR359 ALA360 MET361 MET362 GLU386 PRO387 GLN388 ILE389 TYR390 ARG391 TRP392 ILE393 ARG394 GLU395 TRP396 GLY397 ARG398 ASP399 TYR400 VAL401 SER402 GLU403 LEU404 PRO405 THR406 GLU407 VAL408 GLN409 LYS410 LEU411 LYS412 GLU413 LYS414 CYS415 ASP416 GLY417 LYS418 ILE419 THR422 ASP423 LYS424 LYS425 VAL426 CYS427 LYS428 VAL429 PRO430 PRO431 CYS432 GLN433 ASN434 ALA435 CYS436 LYS437 SER438 TYR439 ASP440 GLN441 TRP442 ILE443 THR444 ARG445 LYS446 LYS447 ASN448 GLN449 TRP450 ASP451 VAL452 LEU453 SER454 ASN455 LYS456 PHE457 ILE458 SER459 VAL460 LYS461 ASN462 ALA463 GLU464 LYS465 VAL466 GLN467 THR468 ALA469 GLY470 ILE471 VAL472 THR473 PRO474 TYR475 ASP476 ILE477 LEU478 LYS479 GLN480 GLU481 LEU482 ASP483 GLU484 PHE485 ASN486 GLU487 VAL488 ALA489 PHE490 GLU491 ASN492 GLU493 ILE494 ASN495 LYS496 ARG497 ASP498 GLY499 ALA500 TYR501 ILE502 GLU503 LEU504 CYS505 VAL506 CYS507 SER508
Unit 2 TYR219 LYS220 ARG221 LYS222 ARG223 ARG224 GLU225 ARG226 ASP227 TRP228 ASP229 CYS230 ASN231 THR232 LYS233 LYS234 ASP235 VAL236 CYS237 ILE238 PRO239 ASP240 ARG241 ARG242 TYR243 GLN244 LEU245 CYS246 MET247 LYS248 GLU249 LEU250 THR251 ASN252 LEU253 PHE267 ARG268 LYS269 LEU270 TYR271 LEU272 LYS273 ARG274 LYS275 LEU276 ILE277 TYR278 ASP279 ALA280 ALA281 VAL282 GLU283 GLY284 ASP285 LEU286 LEU287 LEU288 LYS289 LEU290 ASN291 ASN292 TYR293 ARG294 TYR295 ASN296 LYS297 ASP298 PHE299 CYS300 LYS301 ASP302 ILE303 ARG304 TRP305 SER306 LEU307 GLY308 ASP309 PHE310 GLY311 ASP312 ILE313 ILE314 MET315 GLU320 GLY321 ILE322 GLY323 TYR324 SER325 LYS326 VAL327 VAL328 GLU329 ASN330 ASN331 LEU332 ARG333 SER334 ILE335 PHE336 GLY337 THR338 ASP339 GLU340 LYS341 ALA342 GLN343 GLN344 ARG345 ARG346 LYS347 GLN348 TRP349 TRP350 ASN351 GLU352 SER353 LYS354 ALA355 GLN356 ILE357 TRP358 THR359 ALA360 MET361 MET362 TYR363 SER364 VAL365 LYS366 PRO387 GLN388 ILE389 TYR390 ARG391 TRP392 ILE393 ARG394 GLU395 TRP396 GLY397 ARG398 ASP399 TYR400 VAL401 SER402 GLU403 LEU404 PRO405 THR406 GLU407 VAL408 GLN409 LYS410 LEU411 LYS412 GLU413 LYS414 CYS415 ASP416 GLY417 LYS418 ILE419 TYR421 THR422 ASP423 LYS424 LYS425 VAL426 CYS427 LYS428 VAL429 PRO430 PRO431 CYS432 GLN433 ASN434 ALA435 CYS436 LYS437 SER438 TYR439 ASP440 GLN441 TRP442 ILE443 THR444 ARG445 LYS446 LYS447 ASN448 GLN449 TRP450 ASP451 VAL452 LEU453 SER454 ASN455 LYS456 PHE457 ILE458 SER459 VAL460 LYS461 ASN462 ALA463 GLU464 LYS465 VAL466 GLY470 ILE471 VAL472 THR473 PRO474 TYR475 ASP476 ILE477 LEU478 LYS479 GLN480 GLU481 LEU482 ASP483 GLU484 PHE485 ASN486 GLU487 VAL488 ALA489 PHE490 GLU491 ASN492 GLU493 ILE494 ASN495 LYS496 ARG497 ASP498 GLY499 ALA500 TYR501 ILE502 GLU503 LEU504 CYS505 VAL506 CYS507 SER508
Unit 3 ASP40 ILE41 VAL42 ILE43 THR44 GLN45 ASP46 GLU47 LEU48 SER49 ASN50 PRO51 VAL52 THR53 SER54 GLY55 GLU56 SER57 VAL58 SER59 ILE60 SER61 CYS62 ARG63 SER64 SER65 LYS66 SER67 LEU68 LEU69 TYR70 GLN71 ASP72 GLY73 LYS74 THR75 TYR76 LEU77 ASN78 TRP79 PHE80 LEU81 GLN82 ARG83 PRO84 GLY85 GLN86 SER87 PRO88 GLN89 LEU90 LEU91 ILE92 TYR93 LEU94 MET95 SER96 THR97 ARG98 ALA99 SER100 GLY101 VAL102 SER103 ASP104 ARG105 PHE106 SER107 GLY108 SER109 GLY110 SER111 GLY112 THR113 ASP114 PHE115 THR116 LEU117 GLU118 ILE119 SER120 ARG121 VAL122 GLU123 ALA124 GLU125 ASP126 VAL127 GLY128 VAL129 TYR130 TYR131 CYS132 GLN133 GLN134 LEU135 VAL136 GLU137 TYR138 PRO139 LEU140 THR141 PHE142 GLY143 ALA144 GLY145 THR146 LYS147 LEU148 GLU149 LEU150 LYS151 ARG152 GLN172 LEU173 GLN174 GLN175 SER176 GLY177 PRO178 GLU179 LEU180 VAL181 LYS182 PRO183 GLY184 ALA185 SER186 VAL187 LYS188 ILE189 SER190 CYS191 LYS192 ALA193 SER194 GLY195 TYR196 ALA197 PHE198 ILE199 SER200 SER201 TRP202 MET203 ASN204 TRP205 VAL206 LYS207 GLN208 ARG209 PRO210 GLY211 LYS212 GLY213 LEU214 GLU215 TRP216 ILE217 GLY218 ARG219 ILE220 TYR221 PRO222 GLY223 ASP224 GLY225 ASP226 THR227 HIS228 TYR229 ASN230 GLY231 LYS232 PHE233 LYS234 GLY235 LYS236 ALA237 THR238 LEU239 THR240 ALA241 ASP242 LYS243 SER244 SER245 SER246 THR247 ALA248 TYR249 MET250 GLN251 LEU252 SER253 SER254 LEU255 THR256 SER257 GLU258 ASP259 SER260 ALA261 VAL262 TYR263 PHE264 CYS265 ALA266 ARG267 GLU268 GLU269 THR270 ALA271 THR273 GLY274 GLY275 PHE276 ASP277 TYR278 TRP279 GLY280 GLN281 GLY282 THR283 THR284 LEU285 THR286 VAL287
Unit 4 ASP40 ILE41 VAL42 ILE43 THR44 GLN45 ASP46 GLU47 LEU48 SER49 ASN50 PRO51 VAL52 THR53 SER54 GLY55 GLU56 SER57 VAL58 SER59 ILE60 SER61 CYS62 ARG63 SER64 SER65 LYS66 SER67 LEU68 LEU69 TYR70 GLN71 ASP72 GLY73 LYS74 THR75 TYR76 LEU77 ASN78 TRP79 PHE80 LEU81 GLN82 ARG83 PRO84 GLY85 GLN86 SER87 PRO88 GLN89 LEU90 LEU91 ILE92 TYR93 LEU94 MET95 SER96 THR97 ARG98 ALA99 SER100 GLY101 VAL102 SER103 ASP104 ARG105 PHE106 SER107 GLY108 SER109 GLY110 SER111 GLY112 THR113 ASP114 PHE115 THR116 LEU117 GLU118 ILE119 SER120 ARG121 VAL122 GLU123 ALA124 GLU125 ASP126 VAL127 GLY128 VAL129 TYR130 TYR131 CYS132 GLN133 GLN134 LEU135 VAL136 GLU137 TYR138 PRO139 LEU140 THR141 PHE142 GLY143 ALA144 GLY145 THR146 LYS147 LEU148 GLU149 LEU150 LYS151 ARG152 GLN172 LEU173 GLN174 GLN175 SER176 GLY177 PRO178 GLU179 LEU180 VAL181 LYS182 PRO183 GLY184 ALA185 SER186 VAL187 LYS188 ILE189 SER190 CYS191 LYS192 ALA193 SER194 GLY195 TYR196 ALA197 PHE198 ILE199 SER200 SER201 TRP202 MET203 ASN204 TRP205 VAL206 LYS207 GLN208 ARG209 PRO210 GLY211 LYS212 GLY213 LEU214 GLU215 TRP216 ILE217 GLY218 ARG219 ILE220 TYR221 PRO222 GLY223 ASP224 GLY225 ASP226 THR227 HIS228 TYR229 ASN230 GLY231 LYS232 PHE233 LYS234 GLY235 LYS236 ALA237 THR238 LEU239 THR240 ALA241 ASP242 LYS243 SER244 SER245 SER246 THR247 ALA248 TYR249 MET250 GLN251 LEU252 SER253 SER254 LEU255 THR256 SER257 GLU258 ASP259 SER260 ALA261 VAL262 TYR263 PHE264 CYS265 ALA266 ARG267 GLU268 GLU269 THR270 ALA271 GLN272 THR273 GLY274 GLY275 PHE276 ASP277 TYR278 TRP279 GLY280 GLN281 GLY282 THR283 THR284 LEU285 THR286
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany