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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF MN BOUND DUF89 FROM SACCHAROMYCES CEREVISIAE
Keywords DUF89, METAL-DEPENDENT PHOSPHATASES, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5F13     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROTEIN-GLUTAMATE O-METHYLTRANSFERASE  A 445 6948 0
2  Protein   PROTEIN-GLUTAMATE O-METHYLTRANSFERASE  B 449 6905 0
3  Protein   PROTEIN-GLUTAMATE O-METHYLTRANSFERASE  C 444 6908 0
4  Ligand   PROTEIN-GLUTAMATE O-METHYLTRANSFERASE  A 5 0 13
5  Ligand   PROTEIN-GLUTAMATE O-METHYLTRANSFERASE  B 5 0 22
6  Ligand   PROTEIN-GLUTAMATE O-METHYLTRANSFERASE  C 3 0 11
7 Water     156 0 156
total       1507 20761 202
Proteins
Unit 1 ILE3 PRO4 GLY5 ARG6 PHE7 MET8 THR9 ILE10 ASP11 LYS12 GLY13 THR14 PHE15 GLY16 GLU17 TYR18 THR19 ALA20 SER21 THR22 ARG23 TRP24 PRO25 ILE26 ILE27 ILE28 GLN29 ASN30 ALA31 ILE32 ASP33 ASP34 LEU35 SER36 LYS37 HIS38 GLN39 GLU40 THR41 GLU42 LYS43 SER44 ASN45 GLY46 THR47 LYS48 PHE49 GLU50 GLN51 GLY52 GLU53 VAL54 ILE55 LYS56 LYS57 GLU58 LEU59 LYS60 GLU61 PHE62 ARG63 GLN64 GLU65 ILE66 ILE67 ASP68 ARG69 VAL70 PRO71 LEU72 ARG73 PRO74 PHE75 THR76 GLU77 GLU78 GLU79 ILE80 LYS81 ILE82 ALA83 ASN84 VAL85 PRO86 LEU87 SER88 PHE89 ASN90 GLU91 TYR92 LEU93 LYS94 LYS95 HIS96 PRO97 GLU98 VAL99 ASN100 TRP101 GLY102 ALA103 VAL104 GLU105 TRP106 LEU107 PHE108 SER109 GLU110 VAL111 TYR112 LEU113 TYR114 ARG115 ARG116 VAL117 ASN118 VAL119 LEU120 PHE121 GLN122 ARG123 GLN124 CYS125 GLU126 TRP127 ALA128 LYS129 PHE130 ASP131 ILE132 PHE133 ASN134 ARG135 LEU136 LYS137 GLN138 SER139 THR140 PHE141 GLU142 SER143 SER144 PHE145 TYR146 GLY147 VAL148 VAL149 GLU150 LEU151 ALA152 LEU153 ARG154 TYR155 GLU156 ASN157 LEU158 LEU159 PRO160 GLN161 LEU162 ARG163 GLU164 MET165 LYS166 ASN171 GLU172 ILE173 ASP174 ASP175 ILE176 LEU177 LYS178 VAL179 LEU180 PHE181 LYS182 GLU183 PHE184 ILE185 GLU186 ILE187 SER188 LEU189 TRP190 GLY191 SER209 ILE210 GLN211 GLY212 ALA213 LYS214 ALA215 ARG216 ALA217 ALA218 SER219 GLU220 SER221 LYS222 ILE223 VAL224 VAL225 ASN226 ASP227 THR228 GLU229 LYS230 ALA231 TRP232 GLU233 VAL234 LEU235 THR236 LYS237 ALA238 ARG239 ALA240 ASP241 ALA242 ASN243 SER244 ARG245 GLU246 ILE247 ARG248 VAL249 ASP250 PHE251 VAL252 LEU253 ASP254 ASN255 SER256 GLY257 PHE258 GLU259 LEU260 TYR261 ALA262 ASP263 LEU264 MET265 LEU266 ALA267 ALA268 PHE269 LEU270 LEU271 GLN272 SER273 GLY274 LEU275 ALA276 THR277 LYS278 CYS279 ILE280 PHE281 HIS282 ALA283 LYS284 ASP285 ILE286 PRO287 TYR288 MET289 VAL290 SER291 ASP292 VAL293 MET294 LEU295 LYS296 ASP297 PHE298 ASP299 ILE300 LEU301 VAL302 HIS303 ASP304 LEU305 ARG306 ASP307 ARG308 GLU309 PHE310 PHE311 PRO312 SER313 GLY314 GLU315 PRO316 SER317 THR318 LYS319 GLU320 SER321 ARG322 ALA323 LEU324 ASP325 LEU326 PHE327 ALA328 GLY329 GLU330 MET331 GLU332 LYS333 PHE334 VAL335 SER336 SER337 GLY338 LYS339 ILE340 GLU341 PHE342 ARG343 GLU344 ASP345 SER346 PHE347 TRP348 THR349 THR350 GLU351 LEU352 ASP353 TYR354 TRP355 ASN356 LEU357 ASP358 ALA359 ASN360 GLU361 THR362 LYS363 TYR364 HIS365 GLY366 SER367 ILE368 LEU369 HIS370 LYS371 ASP372 LEU373 GLN374 LYS375 SER376 ASN377 LEU378 VAL379 ILE380 PHE381 LYS382 GLY383 ASP384 LEU385 ASN386 TYR387 ARG388 LYS389 LEU390 THR391 GLY392 ASP393 ARG394 LYS395 TRP396 PRO397 ARG398 THR399 THR400 LYS401 TRP402 GLU403 THR404 ALA405 ILE406 GLY407 PRO408 LEU409 ALA410 THR411 ASN412 GLY413 ILE414 THR415 SER416 LEU417 SER418 LEU419 ARG420 THR421 CYS422 LYS423 ALA424 ASP425 VAL426 GLN427 VAL428 ALA429 LEU430 PRO431 GLU432 GLY433 LEU434 ASP435 ALA436 LYS437 LEU438 SER439 GLN440 GLU441 TRP442 GLU443 LYS444 GLU445 ASN446 PRO447 GLY448 ARG449 GLY450 SER451 TRP452 TRP453 CYS454 CYS455 SER456 GLY457 LYS458 TRP459 ALA460 VAL461 ILE462 CYS463 PHE464 CYS465 SER466 GLY467 ILE468
Unit 2 ILE3 PRO4 GLY5 ARG6 PHE7 MET8 THR9 ILE10 ASP11 LYS12 GLY13 THR14 PHE15 GLY16 GLU17 TYR18 THR19 ALA20 SER21 THR22 ARG23 TRP24 PRO25 ILE26 ILE27 ILE28 GLN29 ASN30 ALA31 ILE32 ASP33 ASP34 LEU35 SER36 LYS37 HIS38 GLN39 GLU40 THR41 GLU42 LYS43 SER44 ASN45 GLY46 THR47 LYS48 PHE49 GLU50 GLN51 GLY52 GLU53 VAL54 ILE55 LYS56 LYS57 GLU58 LEU59 LYS60 GLU61 PHE62 ARG63 GLN64 GLU65 ILE66 ILE67 ASP68 ARG69 VAL70 PRO71 LEU72 ARG73 PRO74 PHE75 THR76 GLU77 GLU78 GLU79 ILE80 LYS81 ILE82 ALA83 ASN84 VAL85 PRO86 LEU87 SER88 PHE89 ASN90 GLU91 TYR92 LEU93 LYS94 LYS95 HIS96 PRO97 GLU98 VAL99 ASN100 TRP101 GLY102 ALA103 VAL104 GLU105 TRP106 LEU107 PHE108 SER109 GLU110 VAL111 TYR112 LEU113 TYR114 ARG115 ARG116 VAL117 ASN118 VAL119 LEU120 PHE121 GLN122 ARG123 GLN124 CYS125 GLU126 TRP127 ALA128 LYS129 PHE130 ASP131 ILE132 PHE133 ASN134 ARG135 LEU136 LYS137 GLN138 SER139 THR140 PHE141 GLU142 SER143 SER144 PHE145 TYR146 GLY147 VAL148 VAL149 GLU150 LEU151 ALA152 LEU153 ARG154 TYR155 GLU156 ASN157 LEU158 LEU159 PRO160 GLN161 LEU162 ARG163 GLU164 MET165 LYS166 GLN167 ASN168 PRO169 GLY170 ASN171 GLU172 ILE173 ASP174 ASP175 ILE176 LEU177 LYS178 VAL179 LEU180 PHE181 LYS182 GLU183 PHE184 ILE185 GLU186 ILE187 SER188 LEU189 TRP190 GLY191 ASN192 ASP206 ILE207 LYS208 SER209 ILE210 GLN211 GLY212 ALA213 LYS214 ALA215 ARG216 ALA217 ALA218 SER219 GLU220 SER221 LYS222 ILE223 VAL224 VAL225 ASN226 ASP227 THR228 GLU229 LYS230 ALA231 TRP232 GLU233 VAL234 LEU235 THR236 LYS237 ALA238 ARG239 ALA240 ASP241 GLU246 ILE247 ARG248 VAL249 ASP250 PHE251 VAL252 LEU253 ASP254 ASN255 SER256 GLY257 PHE258 GLU259 LEU260 TYR261 ALA262 ASP263 LEU264 MET265 LEU266 ALA267 ALA268 PHE269 LEU270 LEU271 GLN272 SER273 GLY274 LEU275 ALA276 THR277 LYS278 CYS279 ILE280 PHE281 HIS282 ALA283 LYS284 ASP285 ILE286 PRO287 TYR288 MET289 VAL290 SER291 ASP292 VAL293 MET294 LEU295 LYS296 ASP297 PHE298 ASP299 ILE300 LEU301 VAL302 HIS303 ASP304 LEU305 ARG306 ASP307 ARG308 GLU309 PHE310 PHE311 PRO312 SER313 GLY314 GLU315 PRO316 SER317 THR318 LYS319 GLU320 SER321 ARG322 ALA323 LEU324 ASP325 LEU326 PHE327 ALA328 GLY329 GLU330 MET331 GLU332 LYS333 PHE334 VAL335 SER336 SER337 GLY338 LYS339 ILE340 GLU341 PHE342 ARG343 GLU344 ASP345 SER346 PHE347 TRP348 THR349 THR350 GLU351 LEU352 ASP353 TYR354 TRP355 ASN356 LEU357 ASP358 ALA359 ASN360 GLU361 THR362 LYS363 TYR364 HIS365 GLY366 SER367 ILE368 LEU369 HIS370 LYS371 ASP372 LEU373 GLN374 LYS375 SER376 ASN377 LEU378 VAL379 ILE380 PHE381 LYS382 GLY383 ASP384 LEU385 ASN386 TYR387 ARG388 LYS389 LEU390 THR391 GLY392 ASP393 ARG394 LYS395 TRP396 PRO397 ARG398 THR399 THR400 LYS401 TRP402 GLU403 THR404 ALA405 ILE406 GLY407 PRO408 LEU409 ALA410 THR411 ASN412 GLY413 ILE414 THR415 SER416 LEU417 SER418 LEU419 ARG420 THR421 CYS422 LYS423 ALA424 ASP425 VAL426 GLN427 VAL428 ALA429 LEU430 PRO431 GLU432 GLY433 LEU434 ASP435 ALA436 LYS437 LEU438 SER439 GLN440 GLU441 TRP442 GLU443 LYS444 GLU445 ASN446 PRO447 GLY448 ARG449 GLY450 SER451 TRP452 TRP453 CYS454 CYS455 SER456 GLY457 LYS458 TRP459 ALA460 VAL461 ILE462 CYS463 PHE464 CYS465 SER466 GLY467 ILE468
Unit 3 ILE3 PRO4 GLY5 ARG6 PHE7 MET8 THR9 ILE10 ASP11 LYS12 GLY13 THR14 PHE15 GLY16 GLU17 TYR18 THR19 ALA20 SER21 THR22 ARG23 TRP24 PRO25 ILE26 ILE27 ILE28 GLN29 ASN30 ALA31 ILE32 ASP33 ASP34 LEU35 SER36 LYS37 HIS38 GLN39 GLU40 THR41 GLU42 GLY46 THR47 LYS48 PHE49 GLU50 GLN51 GLY52 GLU53 VAL54 ILE55 LYS56 LYS57 GLU58 LEU59 LYS60 GLU61 PHE62 ARG63 GLN64 GLU65 ILE66 ILE67 ASP68 ARG69 VAL70 PRO71 LEU72 ARG73 PRO74 PHE75 THR76 GLU77 GLU78 GLU79 ILE80 LYS81 ILE82 ALA83 ASN84 VAL85 PRO86 LEU87 SER88 PHE89 ASN90 GLU91 TYR92 LEU93 LYS94 LYS95 HIS96 PRO97 GLU98 VAL99 ASN100 TRP101 GLY102 ALA103 VAL104 GLU105 TRP106 LEU107 PHE108 SER109 GLU110 VAL111 TYR112 LEU113 TYR114 ARG115 ARG116 VAL117 ASN118 VAL119 LEU120 PHE121 GLN122 ARG123 GLN124 CYS125 GLU126 TRP127 ALA128 LYS129 PHE130 ASP131 ILE132 PHE133 ASN134 ARG135 LEU136 LYS137 GLN138 SER139 THR140 PHE141 GLU142 SER143 SER144 PHE145 TYR146 GLY147 VAL148 VAL149 GLU150 LEU151 ALA152 LEU153 ARG154 TYR155 GLU156 ASN157 LEU158 LEU159 PRO160 GLN161 LEU162 ARG163 GLU164 MET165 LYS166 GLN167 ASN168 ASP174 ASP175 ILE176 LEU177 LYS178 VAL179 LEU180 PHE181 LYS182 GLU183 PHE184 ILE185 GLU186 ILE187 SER188 LEU189 TRP190 GLY191 THR203 LEU204 GLU205 ASP206 ILE207 LYS208 SER209 ILE210 GLN211 GLY212 ALA213 LYS214 ALA215 ARG216 ALA217 ALA218 SER219 GLU220 SER221 LYS222 ILE223 VAL224 VAL225 ASN226 ASP227 THR228 GLU229 LYS230 ALA231 TRP232 GLU233 VAL234 LEU235 THR236 LYS237 ALA238 ARG239 ALA240 ASP241 ARG245 GLU246 ILE247 ARG248 VAL249 ASP250 PHE251 VAL252 LEU253 ASP254 ASN255 SER256 GLY257 PHE258 GLU259 LEU260 TYR261 ALA262 ASP263 LEU264 MET265 LEU266 ALA267 ALA268 PHE269 LEU270 LEU271 GLN272 SER273 GLY274 LEU275 ALA276 THR277 LYS278 CYS279 ILE280 PHE281 HIS282 ALA283 LYS284 ASP285 ILE286 PRO287 TYR288 MET289 VAL290 SER291 ASP292 VAL293 MET294 LEU295 LYS296 ASP297 PHE298 ASP299 ILE300 LEU301 VAL302 HIS303 ASP304 LEU305 ARG306 ASP307 ARG308 GLU309 PHE310 PHE311 PRO312 SER313 GLY314 GLU315 PRO316 SER317 THR318 LYS319 GLU320 SER321 ARG322 ALA323 LEU324 ASP325 LEU326 PHE327 ALA328 GLY329 GLU330 MET331 GLU332 LYS333 PHE334 VAL335 SER336 SER337 GLY338 LYS339 ILE340 GLU341 PHE342 ARG343 GLU344 ASP345 SER346 PHE347 TRP348 THR349 THR350 GLU351 LEU352 ASP353 TYR354 TRP355 ASN356 LEU357 ASP358 ALA359 ASN360 GLU361 THR362 LYS363 TYR364 HIS365 GLY366 SER367 ILE368 LEU369 HIS370 LYS371 ASP372 LEU373 GLN374 LYS375 SER376 ASN377 LEU378 VAL379 ILE380 PHE381 LYS382 GLY383 ASP384 LEU385 ASN386 TYR387 ARG388 LYS389 LEU390 THR391 GLY392 ASP393 ARG394 LYS395 TRP396 PRO397 ARG398 THR399 THR400 LYS401 TRP402 GLU403 THR404 ALA405 ILE406 GLY407 PRO408 LEU409 ALA410 THR411 ASN412 GLY413 ILE414 THR415 SER416 LEU417 SER418 LEU419 ARG420 THR421 CYS422 LYS423 ALA424 ASP425 VAL426 GLN427 VAL428 ALA429 LEU430 PRO431 GLU432 GLY433 LEU434 ASP435 ALA436 LYS437 LEU438 SER439 GLN440 GLU441 TRP442 GLU443 LYS444 GLU445 ASN446 PRO447 GLY448 ARG449 GLY450 SER451 TRP452 TRP453 CYS454 CYS455 SER456 GLY457 LYS458 TRP459 ALA460 VAL461 ILE462 CYS463 PHE464 CYS465 SER466 GLY467 ILE468
Ligands
Unit 4 MN501 PO4502 PO4503 CL504 CL505
Unit 5 MN501 PO4502 PO4503 CL504 EDO505
Unit 6 MN501 PO4502 PO4503
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany