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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF THE HUMAN DNA PRIM SUBUNIT WITH BOUND DNA TEMPLATE/RNA PRIMER
Keywords TRANFERASE-DNA-RNA COMPLEX, DNA PRIMASE, LARGE SUBUNIT, IRON CLUSTER, RNA, DNA, PRIMER, TEMPLATE, TRIPHOSPHATE, INITIATI
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5F0Q     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA PRIMASE LARGE SUBUNIT  A 187 1526 0
2  Protein   DNA PRIMASE LARGE SUBUNIT  B 185 1508 0
3  RNA    C 6 109 32
4  Other macromolecule    D 12 240 0
5  RNA    E 6 109 32
6  Other macromolecule    F 10 199 0
7  Ligand   DNA PRIMASE LARGE SUBUNIT  A 1 0 8
8  Ligand   DNA PRIMASE LARGE SUBUNIT  B 1 0 8
9  Ligand   RNA (5'-R(P*GP*GP*CP*GP*GP*C)-3')  C 1 0 1
10  Ligand   RNA (5'-R(P*GP*GP*CP*GP*GP*C)-3')  E 1 0 1
11 Water     65 0 65
total       475 3691 147
Proteins
Unit 1 LYS270 ILE271 SER272 LEU273 ASP274 GLN275 ILE276 ASP277 LEU278 LEU279 SER280 THR281 LYS282 SER283 PHE284 PRO285 PRO286 CYS287 MET288 ARG289 GLN290 LEU291 HIS292 LYS293 ALA294 LEU295 ARG296 GLU297 ASN298 HIS299 HIS300 LEU301 ARG302 HIS303 GLY304 GLY305 ARG306 MET307 GLN308 TYR309 GLY310 LEU311 PHE312 LEU313 LYS314 GLY315 ILE316 GLY317 LEU318 THR319 LEU320 GLU321 GLN322 ALA323 LEU324 GLN325 PHE326 TRP327 LYS328 GLN329 GLU330 PHE331 ILE332 LYS333 GLY334 LYS335 MET336 ASP337 PRO338 ASP339 LYS340 PHE341 ASP342 LYS343 GLY344 TYR345 SER346 TYR347 ASN348 ILE349 ARG350 HIS351 SER352 PHE353 GLY354 LYS355 GLU356 GLY357 LYS358 ARG359 THR360 ASP361 TYR362 THR363 PRO364 PHE365 SER366 CYS367 LEU368 LYS369 ILE370 ILE371 LEU372 SER373 ASN374 PRO375 PRO376 SER377 GLN378 GLY379 ASP380 TYR381 HIS382 GLY383 CYS384 PRO385 PHE386 ARG387 HIS388 SER389 ASP390 PRO391 GLU392 LEU393 LEU394 LYS395 GLN396 LYS397 LEU398 GLN399 SER400 TYR401 LYS402 ILE403 SER404 PRO405 GLY406 GLY407 ILE408 SER409 GLN410 ILE411 LEU412 ASP413 LEU414 VAL415 LYS416 GLY417 THR418 HIS419 TYR420 GLN421 VAL422 ALA423 CYS424 GLN425 LYS426 TYR427 PHE428 GLU429 MET430 ILE431 HIS432 ASN433 VAL434 ASP435 ASP436 CYS437 GLY438 PHE439 SER440 LEU441 ASN442 HIS443 PRO444 ASN445 GLN446 PHE447 PHE448 CYS449 GLU450 SER451 GLN452 ARG453 ILE454 LEU455 ASN456
Unit 2 ILE271 SER272 LEU273 ASP274 GLN275 ILE276 ASP277 LEU278 LEU279 SER280 THR281 LYS282 SER283 PHE284 PRO285 PRO286 CYS287 MET288 ARG289 GLN290 LEU291 HIS292 LYS293 ALA294 LEU295 ARG296 GLU297 ASN298 HIS299 HIS300 LEU301 ARG302 HIS303 GLY304 GLY305 ARG306 MET307 GLN308 TYR309 GLY310 LEU311 PHE312 LEU313 LYS314 GLY315 ILE316 GLY317 LEU318 THR319 LEU320 GLU321 GLN322 ALA323 LEU324 GLN325 PHE326 TRP327 LYS328 GLN329 GLU330 PHE331 ILE332 LYS333 GLY334 LYS335 MET336 ASP337 PRO338 ASP339 LYS340 PHE341 ASP342 LYS343 GLY344 TYR345 SER346 TYR347 ASN348 ILE349 ARG350 HIS351 SER352 PHE353 GLY354 LYS355 GLU356 GLY357 LYS358 ARG359 THR360 ASP361 TYR362 THR363 PRO364 PHE365 SER366 CYS367 LEU368 LYS369 ILE370 ILE371 LEU372 SER373 ASN374 PRO375 PRO376 SER377 GLN378 GLY379 ASP380 TYR381 HIS382 GLY383 CYS384 PRO385 PHE386 ARG387 HIS388 SER389 ASP390 PRO391 GLU392 LEU393 LEU394 LYS395 GLN396 LYS397 LEU398 GLN399 SER400 TYR401 LYS402 ILE403 SER404 PRO405 GLY406 GLY407 ILE408 SER409 GLN410 ILE411 LEU412 ASP413 LEU414 VAL415 LYS416 GLY417 THR418 HIS419 TYR420 GLN421 VAL422 ALA423 CYS424 GLN425 LYS426 TYR427 PHE428 GLU429 MET430 ILE431 HIS432 ASN433 VAL434 ASP435 ASP436 CYS437 GLY438 PHE439 SER440 LEU441 ASN442 HIS443 PRO444 ASN445 GLN446 PHE447 PHE448 CYS449 GLU450 SER451 GLN452 ARG453 ILE454 LEU455
Nucleic acids
Unit 3 GTP1 G2 C3 G4 G5 C6
Unit 5 GTP1 G2 C3 G4 G5 C6
Other macromolecules
Unit 4 DG1 DC2 DC3 DG4 DC5 DC6 DA7 DA8 DC9 DA10 DT11 DA12
Unit 6 DG1 DC2 DC3 DG4 DC5 DC6 DA7 DA8 DC9 DA10
Ligands
Unit 7 SF4501
Unit 8 SF4501
Unit 9 MG101
Unit 10 MG101
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany