5F0P - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF RETROMER VPS26-VPS35 SUBUNITS BOUND TO SNX3 AND DMT1(L557M) (SEMET LABELED)
• Keywords: PROTEIN TRANSPORT, RETROMER, SORTING NEXIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5F0P	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35	A	458	3709	0
2	Protein	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 26A	B	293	2354	56
3	Protein	SORTING NEXIN-3	C	147	1204	0
4	Protein		D	15	114	16
5	Ligand	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35	A	12	0	54
6	Ligand	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 26A	B	15	0	62
7	Ligand	SORTING NEXIN-3	C	4	0	19
8	Water			42	0	42
total				986	7381	249

Proteins

Unit 1	GLY 12 SER 13 LYS 14 LEU 15 LEU 16 ASP 17 GLU 18 ALA 19 ILE 20 GLN 21 ALA 22 VAL 23 LYS 24 VAL 25 GLN 26 SER 27 PHE 28 GLN 29 MET 30 LYS 31 ARG 32 CYS 33 LEU 34 ASP 35 LYS 36 ASN 37 LYS 38 LEU 39 MET 40 ASP 41 ALA 42 LEU 43 LYS 44 HIS 45 ALA 46 SER 47 ASN 48 MET 49 LEU 50 GLY 51 GLU 52 LEU 53 ARG 54 THR 55 SER 56 MET 57 LEU 58 SER 59 PRO 60 LYS 61 SER 62 TYR 63 TYR 64 GLU 65 LEU 66 TYR 67 MET 68 ALA 69 ILE 70 SER 71 ASP 72 GLU 73 LEU 74 HIS 75 TYR 76 LEU 77 GLU 78 VAL 79 TYR 80 LEU 81 THR 82 ASP 83 GLU 84 PHE 85 ALA 86 LYS 87 GLY 88 ARG 89 LYS 90 VAL 91 ALA 92 ASP 93 LEU 94 TYR 95 GLU 96 LEU 97 VAL 98 GLN 99 TYR 100 ALA 101 GLY 102 ASN 103 ILE 104 ILE 105 PRO 106 ARG 107 LEU 108 TYR 109 LEU 110 LEU 111 ILE 112 THR 113 VAL 114 GLY 115 VAL 116 VAL 117 TYR 118 VAL 119 LYS 120 SER 121 PHE 122 PRO 123 GLN 124 SER 125 ARG 126 LYS 127 ASP 128 ILE 129 LEU 130 LYS 131 ASP 132 LEU 133 VAL 134 GLU 135 MET 136 CYS 137 ARG 138 GLY 139 VAL 140 GLN 141 HIS 142 PRO 143 LEU 144 ARG 145 GLY 146 LEU 147 PHE 148 LEU 149 ARG 150 ASN 151 TYR 152 LEU 153 LEU 154 GLN 155 CYS 156 THR 157 ARG 158 ASN 159 ILE 160 LEU 161 PRO 162 ASP 163 GLU 164 GLY 165 GLU 166 PRO 167 THR 168 ASP 169 GLU 170 GLU 171 THR 172 THR 173 GLY 174 ASP 175 ILE 176 SER 177 ASP 178 SER 179 MET 180 ASP 181 PHE 182 VAL 183 LEU 184 LEU 185 ASN 186 PHE 187 ALA 188 GLU 189 MET 190 ASN 191 LYS 192 LEU 193 TRP 194 VAL 195 ARG 196 MET 197 GLN 198 HIS 199 GLN 200 GLY 201 HIS 202 SER 203 ARG 204 ASP 205 ARG 206 GLU 207 LYS 208 ARG 209 GLU 210 ARG 211 GLU 212 ARG 213 GLN 214 GLU 215 LEU 216 ARG 217 ILE 218 LEU 219 VAL 220 GLY 221 THR 222 ASN 223 LEU 224 VAL 225 ARG 226 LEU 227 SER 228 GLN 229 LEU 230 GLU 231 GLY 232 VAL 233 ASN 234 VAL 235 GLU 236 ARG 237 TYR 238 LYS 239 GLN 240 ILE 241 VAL 242 LEU 243 THR 244 GLY 245 ILE 246 LEU 247 GLU 248 GLN 249 VAL 250 VAL 251 ASN 252 CYS 253 ARG 254 ASP 255 ALA 256 LEU 257 ALA 258 GLN 259 GLU 260 TYR 261 LEU 262 MET 263 GLU 264 CYS 265 ILE 266 ILE 267 GLN 268 VAL 269 PHE 270 PRO 271 ASP 272 GLU 273 PHE 274 HIS 275 LEU 276 GLN 277 THR 278 LEU 279 ASN 280 PRO 281 PHE 282 LEU 283 ARG 284 ALA 285 CYS 286 ALA 287 GLU 288 LEU 289 HIS 290 GLN 291 ASN 292 VAL 293 ASN 294 VAL 295 LYS 296 ASN 297 ILE 298 ILE 299 ILE 300 ALA 301 LEU 302 ILE 303 ASP 304 ARG 305 LEU 306 ALA 307 LEU 308 PHE 309 ALA 310 HIS 311 ARG 312 GLU 313 ASP 314 GLY 315 PRO 316 GLY 317 ILE 318 PRO 319 ALA 320 ASP 321 ILE 322 LYS 323 LEU 324 PHE 325 ASP 326 ILE 327 PHE 328 SER 329 GLN 330 GLN 331 VAL 332 ALA 333 THR 334 VAL 335 ILE 336 GLN 337 SER 338 ARG 339 GLN 340 ASP 341 MET 342 PRO 343 SER 344 GLU 345 ASP 346 VAL 347 VAL 348 SER 349 LEU 350 GLN 351 VAL 352 SER 353 LEU 354 ILE 355 ASN 356 LEU 357 ALA 358 MET 359 LYS 360 CYS 361 TYR 362 PRO 363 ASP 364 ARG 365 VAL 366 ASP 367 TYR 368 VAL 369 ASP 370 LYS 371 VAL 372 LEU 373 GLU 374 THR 375 THR 376 VAL 377 GLU 378 ILE 379 PHE 380 ASN 381 LYS 382 LEU 383 ASN 384 LEU 385 GLU 386 HIS 387 ILE 388 ALA 389 THR 390 SER 391 SER 392 ALA 393 VAL 394 SER 395 LYS 396 GLU 397 LEU 398 THR 399 ARG 400 LEU 401 LEU 402 LYS 403 ILE 404 PRO 405 VAL 406 ASP 407 THR 408 TYR 409 ASN 410 ASN 411 ILE 412 LEU 413 THR 414 VAL 415 LEU 416 LYS 417 LEU 418 LYS 419 HIS 420 PHE 421 HIS 422 PRO 423 LEU 424 PHE 425 GLU 426 TYR 427 PHE 428 ASP 429 TYR 430 GLU 431 SER 432 ARG 433 LYS 434 SER 435 MET 436 SER 437 CYS 438 TYR 439 VAL 440 LEU 441 SER 442 ASN 443 VAL 444 LEU 445 ASP 446 TYR 447 ASN 448 THR 449 GLU 450 ILE 451 VAL 452 SER 453 GLN 454 ASP 455 GLN 456 VAL 457 ASP 458 SER 459 ILE 460 MET 461 ASN 462 LEU 463 VAL 464 SER 465 THR 466 LEU 467 ILE 468 GLN 469
Unit 2	PHE 8 GLY 9 PRO 10 ILE 11 CYS 12 GLU 13 ILE 14 ASP 15 ILE 16 VAL 17 LEU 18 ASN 19 ASP 20 GLY 21 GLU 22 THR 23 ARG 24 LYS 25 MSE 26 ALA 27 GLU 28 MSE 29 LYS 30 THR 31 GLU 32 ASP 33 GLY 34 LYS 35 VAL 36 GLU 37 LYS 38 HIS 39 TYR 40 LEU 41 PHE 42 TYR 43 ASP 44 GLY 45 GLU 46 SER 47 VAL 48 SER 49 GLY 50 LYS 51 VAL 52 ASN 53 LEU 54 ALA 55 PHE 56 LYS 57 GLN 58 PRO 59 GLY 60 LYS 61 ARG 62 LEU 63 GLU 64 HIS 65 GLN 66 GLY 67 ILE 68 ARG 69 ILE 70 GLU 71 PHE 72 VAL 73 GLY 74 GLN 75 ILE 76 GLU 77 LEU 78 PHE 79 ASN 80 ASP 81 LYS 82 SER 83 ASN 84 THR 85 HIS 86 GLU 87 PHE 88 VAL 89 ASN 90 LEU 91 VAL 92 LYS 93 GLU 94 LEU 95 ALA 96 LEU 97 PRO 98 GLY 99 GLU 100 LEU 101 THR 102 GLN 103 SER 104 ARG 105 SER 106 TYR 107 ASP 108 PHE 109 GLU 110 PHE 111 MSE 112 GLN 113 VAL 114 GLU 115 LYS 116 PRO 117 TYR 118 GLU 119 SER 120 TYR 121 ILE 122 GLY 123 ALA 124 ASN 125 VAL 126 ARG 127 LEU 128 ARG 129 TYR 130 PHE 131 LEU 132 LYS 133 VAL 134 THR 135 ILE 136 VAL 137 ARG 138 ARG 139 LEU 140 THR 141 ASP 142 LEU 143 VAL 144 LYS 145 GLU 146 TYR 147 ASP 148 LEU 149 ILE 150 VAL 151 HIS 152 GLN 153 LEU 154 ALA 155 THR 156 TYR 157 PRO 158 ASP 159 VAL 160 ASN 161 ASN 162 SER 163 ILE 164 LYS 165 MSE 166 GLU 167 VAL 168 GLY 169 ILE 170 GLU 171 ASP 172 CYS 173 LEU 174 HIS 175 ILE 176 GLU 177 PHE 178 GLU 179 TYR 180 ASN 181 LYS 182 SER 183 LYS 184 TYR 185 HIS 186 LEU 187 LYS 188 ASP 189 VAL 190 ILE 191 VAL 192 GLY 193 LYS 194 ILE 195 TYR 196 PHE 197 LEU 198 LEU 199 VAL 200 ARG 201 ILE 202 LYS 203 ILE 204 GLN 205 HIS 206 MSE 207 GLU 208 LEU 209 GLN 210 LEU 211 ILE 212 LYS 213 LYS 214 GLU 215 ILE 216 THR 217 GLY 218 ILE 219 GLY 220 PRO 221 SER 222 THR 223 THR 224 THR 225 GLU 226 THR 227 GLU 228 THR 229 ILE 230 ALA 231 LYS 232 TYR 233 GLU 234 ILE 235 MSE 236 ASP 237 GLY 238 ALA 239 PRO 240 VAL 241 LYS 242 GLY 243 GLU 244 SER 245 ILE 246 PRO 247 ILE 248 ARG 249 LEU 250 PHE 251 LEU 252 ALA 253 GLY 254 TYR 255 ASP 256 PRO 257 THR 258 PRO 259 THR 260 MSE 261 ARG 262 ASP 263 VAL 264 ASN 265 LYS 266 LYS 267 PHE 268 SER 269 VAL 270 ARG 271 TYR 272 PHE 273 LEU 274 ASN 275 LEU 276 VAL 277 LEU 278 VAL 279 ASP 280 GLU 281 GLU 282 ASP 283 ARG 284 ARG 285 TYR 286 PHE 287 LYS 288 GLN 289 GLN 290 GLU 291 ILE 292 ILE 293 LEU 294 TRP 295 ARG 296 LYS 297 ALA 298 PRO 299 GLU 300
Unit 3	THR 4 VAL 5 ALA 6 ASP 7 THR 8 ARG 9 ARG 10 LEU 11 ILE 12 THR 13 LYS 14 PRO 15 GLN 16 ASN 17 LEU 18 ASN 19 ASP 20 ALA 21 TYR 22 GLY 23 PRO 24 PRO 25 SER 26 ASN 27 PHE 28 LEU 29 GLU 30 ILE 31 ASP 32 VAL 33 SER 34 ASN 35 PRO 36 GLN 37 THR 38 VAL 39 GLY 40 VAL 41 GLY 42 ARG 43 GLY 44 ARG 45 PHE 46 THR 47 THR 48 TYR 49 GLU 50 ILE 51 ARG 52 VAL 53 LYS 54 THR 55 ASN 56 LEU 57 PRO 58 ILE 59 PHE 60 LYS 61 LEU 62 LYS 63 GLU 64 SER 65 THR 66 VAL 67 ARG 68 ARG 69 ARG 70 TYR 71 SER 72 ASP 73 PHE 74 GLU 75 TRP 76 LEU 77 ARG 78 SER 79 GLU 80 LEU 81 GLU 82 ARG 83 GLU 84 SER 85 LYS 86 VAL 87 VAL 88 VAL 89 PRO 90 PRO 91 LEU 92 PRO 93 GLY 94 LYS 95 ALA 96 PHE 97 LEU 98 ARG 99 GLN 100 LEU 101 PRO 102 PHE 103 ARG 104 GLY 105 ASP 106 ASP 107 GLY 108 ILE 109 PHE 110 ASP 111 ASP 112 ASN 113 PHE 114 ILE 115 GLU 116 GLU 117 ARG 118 LYS 119 GLN 120 GLY 121 LEU 122 GLU 123 GLN 124 PHE 125 ILE 126 ASN 127 LYS 128 VAL 129 ALA 130 GLY 131 HIS 132 PRO 133 LEU 134 ALA 135 GLN 136 ASN 137 GLU 138 ARG 139 CYS 140 LEU 141 HIS 142 MET 143 PHE 144 LEU 145 GLN 146 ASP 147 GLU 148 ILE 149 ILE 150
Unit 4	GLN 551 PRO 552 GLU 553 LEU 554 TYR 555 LEU 556 MSE 557 ASN 558 THR 559 MSE 560 SER 561 HIS 562 HIS 563 HIS 564 HIS 565

Ligands

Unit 5	SO4 501 SO4 502 GOL 503 GOL 504 EDO 505 EDO 506 EDO 507 EDO 508 EDO 509 EDO 510 EDO 511 EDO 512
Unit 6	SO4 401 GOL 402 EDO 403 EDO 404 EDO 405 EDO 406 EDO 407 EDO 408 EDO 409 EDO 410 EDO 411 EDO 412 EDO 413 GOL 414 ZN 415
Unit 7	SO4 201 SO4 202 SO4 203 EDO 204