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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF AMINO TERMINAL DOMAINS OF THE NMDA RECE SUBUNIT GLUN1 AND GLUN2B IN COMPLEX WITH IFENPRODIL
Keywords GLUTAMATE RECEPTOR, ALLOSTERIC MODULATOR, GLUN2B ANTAGONISTS TRANSPORT PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5EWJ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NMDA GLUTAMATE RECEPTOR SUBUNIT  A 357 2752 0
2  Protein   GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2B  B 353 2750 0
3  Protein   NMDA GLUTAMATE RECEPTOR SUBUNIT  C 356 2737 0
4  Protein   GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2B  D 355 2778 0
5  Ligand    E 5 0 61
6  Ligand   NMDA GLUTAMATE RECEPTOR SUBUNIT  A 2 0 15
7  Ligand   GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2B  B 3 0 52
8  Ligand   NMDA GLUTAMATE RECEPTOR SUBUNIT  C 2 0 15
9  Ligand   GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2B  D 3 0 52
10 Water     351 0 351
total       1787 11017 546
Proteins
Unit 1 ASP23 PRO24 LYS25 ILE26 VAL27 ASN28 ILE29 GLY30 ALA31 VAL32 LEU33 SER34 THR35 LYS36 LYS37 HIS38 GLU39 GLN40 ILE41 PHE42 ARG43 GLU44 ALA45 VAL46 ASN47 GLN48 ALA49 ASN50 LYS51 ARG52 HIS53 PHE54 THR55 ARG56 LYS57 ILE58 GLN59 LEU60 GLN61 ALA62 THR63 SER64 VAL65 THR66 HIS67 ARG68 PRO69 ASN70 ALA71 ILE72 GLN73 MET74 ALA75 LEU76 SER77 VAL78 CYS79 GLU80 ASP81 LEU82 ILE83 SER84 SER85 GLN86 VAL87 TYR88 ALA89 ILE90 LEU91 VAL92 SER93 HIS94 PRO95 PRO96 LEU102 THR103 PRO104 THR105 PRO106 ILE107 SER108 TYR109 THR110 ALA111 GLY112 PHE113 TYR114 ARG115 ILE116 PRO117 VAL118 ILE119 GLY120 LEU121 THR122 THR123 ARG124 MET125 SER126 ILE127 TYR128 SER129 ASP130 LYS131 SER132 ILE133 HIS134 LEU135 SER136 PHE137 LEU138 ARG139 THR140 VAL141 PRO142 PRO143 TYR144 SER145 HIS146 GLN147 ALA148 LEU149 VAL150 TRP151 PHE152 GLU153 MET154 MET155 ARG156 LEU157 PHE158 ASN159 TRP160 ASN161 HIS162 VAL163 ILE164 LEU165 ILE166 VAL167 SER168 ASP169 ASP170 HIS171 GLU172 GLY173 ARG174 ALA175 ALA176 GLN177 LYS178 LYS179 LEU180 GLU181 THR182 LEU183 LEU184 GLU185 GLY209 PRO210 LYS211 ALA212 ASP213 LYS214 VAL215 LEU216 GLN217 PHE218 GLU219 PRO220 GLY221 THR222 LYS223 ASN224 LEU225 THR226 ALA227 LEU228 LEU229 LEU230 GLU231 ALA232 LYS233 GLU234 LEU235 GLU236 ALA237 ARG238 VAL239 ILE240 ILE241 LEU242 SER243 ALA244 SER245 GLU246 ASP247 ASP248 ALA249 THR250 ALA251 VAL252 TYR253 LYS254 SER255 ALA256 ALA257 MET258 LEU259 ASP260 MET261 THR262 GLY263 ALA264 GLY265 TYR266 VAL267 TRP268 LEU269 VAL270 GLY271 GLU272 ARG273 GLU274 ILE275 SER276 GLY277 SER278 ALA279 LEU280 ARG281 TYR282 ALA283 PRO284 ASP285 GLY286 ILE287 ILE288 GLY289 LEU290 GLN291 LEU292 ILE293 ASN294 GLY295 LYS296 ASN297 GLU298 SER299 ALA300 HIS301 ILE302 SER303 ASP304 ALA305 VAL306 ALA307 VAL308 VAL309 ALA310 GLN311 ALA312 ILE313 HIS314 GLU315 LEU316 PHE317 GLU318 MET319 GLU320 ASN321 ILE322 THR323 ASP324 PRO325 PRO326 ARG327 GLY328 CYS329 VAL330 GLY331 ASN332 THR333 ASN334 ILE335 TRP336 LYS337 THR338 GLY339 PRO340 LEU341 PHE342 LYS343 ARG344 VAL345 LEU346 MET347 SER348 SER349 LYS350 TYR351 PRO352 ASP353 GLY354 VAL355 THR356 GLY357 ARG358 ILE359 GLU360 PHE361 ASN362 GLU363 ASP364 GLY365 ASP366 ARG367 LYS368 PHE369 ALA370 GLN371 TYR372 SER373 ILE374 MET375 ASN376 LEU377 GLN378 ASN379 ARG380 LYS381 LEU382 VAL383 GLN384 VAL385 GLY386 ILE387 PHE388 ASN389 GLY390 SER391 TYR392 ILE393 ILE394 GLN395 ASN396 ASP397 ARG398 LYS399 ILE400 ILE401 TRP402 PRO403 GLY404 GLY405 GLU406 THR407
Unit 2 PRO32 PRO33 SER34 ILE35 GLY36 ILE37 ALA38 VAL39 ILE40 LEU41 VAL42 GLY43 THR44 SER45 ASP46 GLU47 VAL48 ALA49 ILE50 LYS51 ASP52 LEU62 SER63 VAL64 VAL65 PRO66 ARG67 VAL68 GLU69 LEU70 VAL71 ALA72 MET73 ASN74 GLU75 THR76 ASP77 PRO78 LYS79 SER80 ILE81 ILE82 THR83 ARG84 ILE85 CYS86 ASP87 LEU88 MET89 SER90 ASP91 ARG92 LYS93 ILE94 GLN95 GLY96 VAL97 VAL98 PHE99 ALA100 ASP101 ASP102 THR103 ASP104 GLN105 GLU106 ALA107 ILE108 ALA109 GLN110 ILE111 LEU112 ASP113 PHE114 ILE115 SER116 ALA117 GLN118 THR119 LEU120 THR121 PRO122 ILE123 LEU124 GLY125 ILE126 HIS127 GLY128 GLY129 SER130 SER131 MET132 ILE133 MET134 ALA135 ASP136 LYS137 ASP138 GLU139 SER140 SER141 MET142 PHE143 PHE144 GLN145 PHE146 GLY147 PRO148 SER149 ILE150 GLU151 GLN152 GLN153 ALA154 SER155 VAL156 MET157 LEU158 ASN159 ILE160 MET161 GLU162 GLU163 TYR164 ASP165 TRP166 TYR167 ILE168 PHE169 SER170 ILE171 VAL172 THR173 THR174 TYR175 PHE176 PRO177 GLY178 TYR179 GLN180 ASP181 PHE182 VAL183 ASN184 LYS185 ILE186 ARG187 SER188 THR189 ILE190 GLU191 ASN192 SER193 PHE194 VAL195 GLY196 TRP197 GLU198 LEU199 GLU200 GLU201 VAL202 LEU203 LEU204 LEU205 ASP206 MET207 SER208 LEU209 ASP210 ASP211 GLY212 ASP213 SER214 LYS215 ILE216 GLN217 ASN218 GLN219 LEU220 LYS221 LYS222 LEU223 GLN224 SER225 PRO226 ILE227 ILE228 LEU229 LEU230 TYR231 CYS232 THR233 LYS234 GLU235 GLU236 ALA237 THR238 TYR239 ILE240 PHE241 GLU242 VAL243 ALA244 ASN245 SER246 VAL247 GLY248 LEU249 THR250 GLY251 TYR252 GLY253 TYR254 THR255 TRP256 ILE257 VAL258 PRO259 SER260 LEU261 VAL262 ALA263 GLY264 ASP265 THR266 ASP267 THR268 VAL269 PRO270 ALA271 GLU272 PHE273 PRO274 THR275 GLY276 LEU277 ILE278 SER279 VAL280 SER281 TYR282 ASP283 GLU284 TRP285 ASP286 TYR287 GLY288 LEU289 PRO290 ALA291 ARG292 VAL293 ARG294 ASP295 GLY296 ILE297 ALA298 ILE299 ILE300 THR301 THR302 ALA303 ALA304 SER305 ASP306 MET307 LEU308 SER309 GLU310 HIS311 SER312 PHE313 ILE314 PRO315 GLU316 PRO317 LYS318 SER319 SER320 CYS321 TYR322 ASN323 THR324 HIS325 GLU326 LYS327 ARG328 ILE329 TYR330 GLN331 SER332 ASN333 MET334 LEU335 ASN336 ARG337 TYR338 LEU339 ILE340 ASN341 VAL342 THR343 PHE344 GLU345 GLY346 ARG347 ASP348 LEU349 SER350 PHE351 SER352 GLU353 ASP354 GLY355 TYR356 GLN357 MET358 HIS359 PRO360 LYS361 LEU362 VAL363 ILE364 ILE365 LEU366 LEU367 ASN368 LYS369 GLU370 ARG371 LYS372 TRP373 GLU374 ARG375 VAL376 GLY377 LYS378 TRP379 LYS380 ASP381 LYS382 SER383 LEU384 GLN385 MET386 LYS387 TYR388 TYR389 VAL390 TRP391 PRO392 ARG393
Unit 3 ASP23 PRO24 LYS25 ILE26 VAL27 ASN28 ILE29 GLY30 ALA31 VAL32 LEU33 SER34 THR35 LYS36 LYS37 HIS38 GLU39 GLN40 ILE41 PHE42 ARG43 GLU44 ALA45 VAL46 ASN47 GLN48 ALA49 ASN50 LYS51 ARG52 HIS53 PHE54 THR55 ARG56 LYS57 ILE58 GLN59 LEU60 GLN61 ALA62 THR63 SER64 VAL65 THR66 HIS67 ARG68 PRO69 ASN70 ALA71 ILE72 GLN73 MET74 ALA75 LEU76 SER77 VAL78 CYS79 GLU80 ASP81 LEU82 ILE83 SER84 SER85 GLN86 VAL87 TYR88 ALA89 ILE90 LEU91 VAL92 SER93 HIS94 PRO95 LEU102 THR103 PRO104 THR105 PRO106 ILE107 SER108 TYR109 THR110 ALA111 GLY112 PHE113 TYR114 ARG115 ILE116 PRO117 VAL118 ILE119 GLY120 LEU121 THR122 THR123 ARG124 MET125 SER126 ILE127 TYR128 SER129 ASP130 LYS131 SER132 ILE133 HIS134 LEU135 SER136 PHE137 LEU138 ARG139 THR140 VAL141 PRO142 PRO143 TYR144 SER145 HIS146 GLN147 ALA148 LEU149 VAL150 TRP151 PHE152 GLU153 MET154 MET155 ARG156 LEU157 PHE158 ASN159 TRP160 ASN161 HIS162 VAL163 ILE164 LEU165 ILE166 VAL167 SER168 ASP169 ASP170 HIS171 GLU172 GLY173 ARG174 ALA175 ALA176 GLN177 LYS178 LYS179 LEU180 GLU181 THR182 LEU183 LEU184 GLU185 GLY209 PRO210 LYS211 ALA212 ASP213 LYS214 VAL215 LEU216 GLN217 PHE218 GLU219 PRO220 GLY221 THR222 LYS223 ASN224 LEU225 THR226 ALA227 LEU228 LEU229 LEU230 GLU231 ALA232 LYS233 GLU234 LEU235 GLU236 ALA237 ARG238 VAL239 ILE240 ILE241 LEU242 SER243 ALA244 SER245 GLU246 ASP247 ASP248 ALA249 THR250 ALA251 VAL252 TYR253 LYS254 SER255 ALA256 ALA257 MET258 LEU259 ASP260 MET261 THR262 GLY263 ALA264 GLY265 TYR266 VAL267 TRP268 LEU269 VAL270 GLY271 GLU272 ARG273 GLU274 ILE275 SER276 GLY277 SER278 ALA279 LEU280 ARG281 TYR282 ALA283 PRO284 ASP285 GLY286 ILE287 ILE288 GLY289 LEU290 GLN291 LEU292 ILE293 ASN294 GLY295 LYS296 ASN297 GLU298 SER299 ALA300 HIS301 ILE302 SER303 ASP304 ALA305 VAL306 ALA307 VAL308 VAL309 ALA310 GLN311 ALA312 ILE313 HIS314 GLU315 LEU316 PHE317 GLU318 MET319 GLU320 ASN321 ILE322 THR323 ASP324 PRO325 PRO326 ARG327 GLY328 CYS329 VAL330 GLY331 ASN332 THR333 ASN334 ILE335 TRP336 LYS337 THR338 GLY339 PRO340 LEU341 PHE342 LYS343 ARG344 VAL345 LEU346 MET347 SER348 SER349 LYS350 TYR351 PRO352 ASP353 GLY354 VAL355 THR356 GLY357 ARG358 ILE359 GLU360 PHE361 ASN362 GLU363 ASP364 GLY365 ASP366 ARG367 LYS368 PHE369 ALA370 GLN371 TYR372 SER373 ILE374 MET375 ASN376 LEU377 GLN378 ASN379 ARG380 LYS381 LEU382 VAL383 GLN384 VAL385 GLY386 ILE387 PHE388 ASN389 GLY390 SER391 TYR392 ILE393 ILE394 GLN395 ASN396 ASP397 ARG398 LYS399 ILE400 ILE401 TRP402 PRO403 GLY404 GLY405 GLU406 THR407
Unit 4 PRO32 PRO33 SER34 ILE35 GLY36 ILE37 ALA38 VAL39 ILE40 LEU41 VAL42 GLY43 THR44 SER45 ASP46 GLU47 VAL48 ALA49 ILE50 LYS51 ASP52 PHE59 HIS60 HIS61 LEU62 SER63 VAL64 VAL65 PRO66 ARG67 VAL68 GLU69 LEU70 VAL71 ALA72 MET73 ASN74 GLU75 THR76 ASP77 PRO78 LYS79 SER80 ILE81 ILE82 THR83 ARG84 ILE85 CYS86 ASP87 LEU88 MET89 SER90 ASP91 ARG92 LYS93 ILE94 GLN95 GLY96 VAL97 VAL98 PHE99 ALA100 ASP101 ASP102 THR103 ASP104 GLN105 GLU106 ALA107 ILE108 ALA109 GLN110 ILE111 LEU112 ASP113 PHE114 ILE115 SER116 ALA117 GLN118 THR119 LEU120 THR121 PRO122 ILE123 LEU124 GLY125 ILE126 HIS127 GLY128 GLY129 SER130 SER131 MET132 ILE133 MET134 ALA135 ASP136 LYS137 ASP138 GLU139 SER140 SER141 MET142 PHE143 PHE144 GLN145 PHE146 GLY147 PRO148 SER149 ILE150 GLU151 GLN152 GLN153 ALA154 SER155 VAL156 MET157 LEU158 ASN159 ILE160 MET161 GLU162 GLU163 TYR164 ASP165 TRP166 TYR167 ILE168 PHE169 SER170 ILE171 VAL172 THR173 THR174 TYR175 PHE176 PRO177 GLY178 TYR179 GLN180 ASP181 PHE182 VAL183 ASN184 LYS185 ILE186 ARG187 SER188 THR189 ILE190 GLU191 ASN192 SER193 PHE194 VAL195 GLY196 TRP197 GLU198 LEU199 GLU200 GLU201 VAL202 LEU203 LEU204 LEU205 ASP206 MET207 SER208 LEU209 ASP210 ASP211 GLY212 ASP213 SER214 LYS215 ILE216 GLN217 ASN218 GLN219 LEU220 LYS221 LYS222 LEU223 GLN224 SER225 PRO226 ILE227 ILE228 LEU229 LEU230 TYR231 CYS232 THR233 LYS234 GLU235 GLU236 ALA237 THR238 TYR239 ILE240 PHE241 GLU242 VAL243 ALA244 ASN245 SER246 VAL247 GLY248 LEU249 THR250 GLY251 TYR252 GLY253 TYR254 THR255 TRP256 ILE257 VAL258 PRO259 SER260 LEU261 VAL262 ALA263 GLY264 ASP265 THR266 ASP267 THR268 VAL269 PRO270 ALA271 GLU272 PHE273 PRO274 THR275 GLY276 LEU277 ILE278 SER279 VAL280 SER281 TYR282 ASP283 GLU284 TRP285 ASP286 TYR287 GLY288 LEU289 PRO290 ALA291 ARG292 VAL293 ARG294 ASP295 GLY296 ILE297 ALA298 ILE299 ILE300 THR301 THR302 ALA303 ALA304 SER305 ASP306 MET307 LEU308 SER309 GLU310 HIS311 SER312 PHE313 ILE314 PRO315 GLU316 PRO317 LYS318 SER319 SER320 CYS321 TYR322 ASN323 THR324 HIS325 GLU326 LYS327 ARG328 ILE329 TYR330 GLN331 SER332 ASN333 MET334 LEU335 ASN336 ARG337 TYR338 LEU339 ILE340 ASN341 VAL342 THR343 PHE344 GLU345 ASP348 LEU349 SER350 PHE351 SER352 GLU353 ASP354 GLY355 TYR356 GLN357 MET358 HIS359 PRO360 LYS361 LEU362 VAL363 ILE364 ILE365 LEU366 LEU367 ASN368 LYS369 GLU370 ARG371 LYS372 TRP373 GLU374 ARG375 VAL376 GLY377 LYS378 TRP379 LYS380 ASP381 LYS382 SER383 LEU384 GLN385 MET386 LYS387 TYR388 TYR389 VAL390 TRP391 PRO392 ARG393 MET394
Ligands
Unit 5 NAG1 NAG2 BMA3 MAN4 MAN5
Unit 6 NA501 NAG502
Unit 7 NAG501 NAG502 QEL503
Unit 8 NA501 NAG502
Unit 9 NAG501 NAG502 QEL503
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany