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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN DESMOCOLLIN-2 ECTODOMAIN FRAGMENT
Keywords EXTRACELLULAR CADHERIN DOMAIN, CELL ADHESION, CELL SURFACE,
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5ERP     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DESMOCOLLIN-2  A 443 6802 0
2  Protein   DESMOCOLLIN-2  B 438 6733 0
3  Ligand    C 4 0 100
4  Ligand    D 4 0 100
5  Ligand    E 4 0 100
6  Ligand   DESMOCOLLIN-2  A 20 0 189
7  Ligand   DESMOCOLLIN-2  B 19 0 152
8 Water     111 0 111
total       1043 13535 752
Proteins
Unit 1 GLU101 ASN102 ASP103 ASN104 TYR105 PRO106 ILE107 PHE108 THR109 GLU110 GLU111 THR112 TYR113 THR114 PHE115 THR116 ILE117 PHE118 GLU119 ASN120 CYS121 ARG122 VAL123 GLY124 THR125 THR126 VAL127 GLY128 GLN129 VAL130 CYS131 ALA132 THR133 ASP134 LYS135 ASP136 GLU137 PRO138 ASP139 THR140 MET141 HIS142 THR143 ARG144 LEU145 LYS146 TYR147 SER148 ILE149 ILE150 GLY151 GLN152 VAL153 PRO154 PRO155 SER156 PRO157 THR158 LEU159 PHE160 SER161 MET162 HIS163 PRO164 THR165 THR166 GLY167 VAL168 ILE169 THR170 THR171 THR172 SER173 SER174 GLN175 LEU176 ASP177 ARG178 GLU179 LEU180 ILE181 ASP182 LYS183 TYR184 GLN185 LEU186 LYS187 ILE188 LYS189 VAL190 GLN191 ASP192 MET193 ASP194 GLY195 GLN196 TYR197 PHE198 GLY199 LEU200 GLN201 THR202 THR203 SER204 THR205 CYS206 ILE207 ILE208 ASN209 ILE210 ASP211 ASP212 VAL213 ASN214 ASP215 HIS216 LEU217 PRO218 THR219 PHE220 THR221 ARG222 THR223 SER224 TYR225 VAL226 THR227 SER228 VAL229 GLU230 GLU231 ASN232 THR233 VAL234 ASP235 VAL236 GLU237 ILE238 LEU239 ARG240 VAL241 THR242 VAL243 GLU244 ASP245 LYS246 ASP247 LEU248 VAL249 ASN250 THR251 ALA252 ASN253 TRP254 ARG255 ALA256 ASN257 TYR258 THR259 ILE260 LEU261 LYS262 GLY263 ASN264 GLU265 ASN266 GLY267 ASN268 PHE269 LYS270 ILE271 VAL272 THR273 ASP274 ALA275 LYS276 THR277 ASN278 GLU279 GLY280 VAL281 LEU282 CYS283 VAL284 VAL285 LYS286 PRO287 LEU288 ASN289 TYR290 GLU291 GLU292 LYS293 GLN294 GLN295 MET296 ILE297 LEU298 GLN299 ILE300 GLY301 VAL302 VAL303 ASN304 GLU305 ALA306 PRO307 PHE308 SER309 ARG310 GLU311 ALA312 SER313 PRO314 ARG315 SER316 ALA317 MET318 SER319 THR320 ALA321 THR322 VAL323 THR324 VAL325 ASN326 VAL327 GLU328 ASP329 GLN330 ASP331 GLU332 GLY333 PRO334 GLU335 CYS336 ASN337 PRO338 PRO339 ILE340 GLN341 THR342 VAL343 ARG344 MET345 LYS346 GLU347 ASN348 ALA349 GLU350 VAL351 GLY352 THR353 THR354 SER355 ASN356 GLY357 TYR358 LYS359 ALA360 TYR361 ASP362 PRO363 GLU364 THR365 ARG366 SER367 SER368 SER369 GLY370 ILE371 ARG372 TYR373 LYS374 LYS375 LEU376 THR377 ASP378 PRO379 THR380 GLY381 TRP382 VAL383 THR384 ILE385 ASP386 GLU387 ASN388 THR389 GLY390 SER391 ILE392 LYS393 VAL394 PHE395 ARG396 SER397 LEU398 ASP399 ARG400 GLU401 ALA402 GLU403 THR404 ILE405 LYS406 ASN407 GLY408 ILE409 TYR410 ASN411 ILE412 THR413 VAL414 LEU415 ALA416 SER417 ASP418 GLN419 GLY420 GLY421 ARG422 THR423 CYS424 THR425 GLY426 THR427 LEU428 GLY429 ILE430 ILE431 LEU432 GLN433 ASP434 VAL435 ASN436 ASP437 ASN438 SER439 PRO440 PHE441 ILE442 PRO443 LYS444 LYS445 THR446 VAL447 ILE448 ILE449 CYS450 LYS451 PRO452 THR453 MET454 SER455 SER456 ALA457 GLU458 ILE459 VAL460 ALA461 VAL462 ASP463 PRO464 ASP465 GLU466 PRO467 ILE468 HIS469 GLY470 PRO471 PRO472 PHE473 ASP474 PHE475 SER476 LEU477 GLU478 SER479 SER480 THR481 SER482 GLU483 VAL484 GLN485 ARG486 MET487 TRP488 ARG489 LEU490 LYS491 ALA492 ILE493 ASN494 ASP495 THR496 ALA497 ALA498 ARG499 LEU500 SER501 TYR502 GLN503 ASN504 ASP505 PRO506 PRO507 PHE508 GLY509 SER510 TYR511 VAL512 VAL513 PRO514 ILE515 THR516 VAL517 ARG518 ASP519 ARG520 LEU521 GLY522 MET523 SER524 SER525 VAL526 THR527 SER528 LEU529 ASP530 VAL531 THR532 LEU533 CYS534 ASP535 CYS536 ILE537 THR538 GLU539 ASN540 ASP541 CYS542 THR543
Unit 2 GLU101 ASN102 ASP103 ASN104 TYR105 PRO106 ILE107 PHE108 THR109 GLU110 GLU111 THR112 TYR113 THR114 PHE115 THR116 ILE117 PHE118 GLU119 ASN120 CYS121 ARG122 VAL123 GLY124 THR125 THR126 VAL127 GLY128 GLN129 VAL130 CYS131 ALA132 THR133 ASP134 LYS135 ASP136 GLU137 PRO138 ASP139 THR140 MET141 HIS142 THR143 ARG144 LEU145 LYS146 TYR147 SER148 ILE149 ILE150 GLY151 GLN152 VAL153 PRO154 PRO155 SER156 PRO157 THR158 LEU159 PHE160 SER161 MET162 HIS163 PRO164 THR165 THR166 GLY167 VAL168 ILE169 THR170 THR171 THR172 SER173 SER174 GLN175 LEU176 ASP177 ARG178 GLU179 LEU180 ILE181 ASP182 LYS183 TYR184 GLN185 LEU186 LYS187 ILE188 LYS189 VAL190 GLN191 ASP192 MET193 ASP194 GLY195 GLN196 TYR197 PHE198 GLY199 LEU200 GLN201 THR202 THR203 SER204 THR205 CYS206 ILE207 ILE208 ASN209 ILE210 ASP211 ASP212 VAL213 ASN214 ASP215 HIS216 LEU217 PRO218 THR219 PHE220 THR221 ARG222 THR223 SER224 TYR225 VAL226 THR227 SER228 VAL229 GLU230 GLU231 ASN232 THR233 VAL234 ASP235 VAL236 GLU237 ILE238 LEU239 ARG240 VAL241 THR242 VAL243 GLU244 ASP245 LYS246 ASP247 LEU248 VAL249 ASN250 THR251 ALA252 ASN253 TRP254 ARG255 ALA256 ASN257 TYR258 THR259 ILE260 LEU261 LYS262 GLY263 ASN264 GLU265 ASN266 GLY267 ASN268 PHE269 LYS270 ILE271 VAL272 THR273 ASP274 ALA275 LYS276 THR277 ASN278 GLU279 GLY280 VAL281 LEU282 CYS283 VAL284 VAL285 LYS286 PRO287 LEU288 ASN289 TYR290 GLU291 GLU292 LYS293 GLN294 GLN295 MET296 ILE297 LEU298 GLN299 ILE300 GLY301 VAL302 VAL303 ASN304 GLU305 ALA306 PRO307 PHE308 SER309 ARG310 ALA317 MET318 SER319 THR320 ALA321 THR322 VAL323 THR324 VAL325 ASN326 VAL327 GLU328 ASP329 GLN330 ASP331 GLU332 GLY333 PRO334 GLU335 CYS336 ASN337 PRO338 PRO339 ILE340 GLN341 THR342 VAL343 ARG344 MET345 LYS346 GLU347 ASN348 ALA349 GLU350 VAL351 GLY352 THR353 THR354 SER355 ASN356 GLY357 TYR358 LYS359 ALA360 TYR361 ASP362 PRO363 GLU364 THR365 ARG366 SER367 SER368 SER369 GLY370 ILE371 ARG372 TYR373 LYS374 LYS375 LEU376 THR377 ASP378 PRO379 THR380 GLY381 TRP382 VAL383 THR384 ILE385 ASP386 GLU387 ASN388 THR389 GLY390 SER391 ILE392 LYS393 VAL394 PHE395 ARG396 SER397 LEU398 ASP399 ARG400 GLU401 ALA402 GLU403 THR404 ILE405 LYS406 ASN407 GLY408 ILE409 TYR410 ASN411 ILE412 THR413 VAL414 LEU415 ALA416 SER417 ASP418 GLN419 GLY420 GLY421 ARG422 THR423 CYS424 THR425 GLY426 THR427 LEU428 GLY429 ILE430 ILE431 LEU432 GLN433 ASP434 VAL435 ASN436 ASP437 ASN438 SER439 PRO440 PHE441 ILE442 PRO443 LYS444 LYS445 THR446 VAL447 ILE448 ILE449 CYS450 LYS451 PRO452 THR453 MET454 SER455 SER456 ALA457 GLU458 ILE459 VAL460 ALA461 VAL462 ASP463 PRO464 ASP465 GLU466 PRO467 ILE468 HIS469 GLY470 PRO471 PRO472 PHE473 ASP474 PHE475 SER476 LEU477 GLU478 SER479 SER480 THR481 SER482 GLU483 VAL484 GLN485 ARG486 MET487 TRP488 ARG489 LEU490 LYS491 ALA492 ILE493 ASN494 ASP495 THR496 ALA497 ALA498 ARG499 LEU500 SER501 TYR502 GLN503 ASN504 ASP505 PRO506 PRO507 PHE508 GLY509 SER510 TYR511 VAL512 VAL513 PRO514 ILE515 THR516 VAL517 ARG518 ASP519 ARG520 LEU521 GLY522 MET523 SER524 SER525 VAL526 THR527 SER528 LEU529 ASP530 VAL531 THR532 LEU533 CYS534 ASP535 CYS536 ILE537 THR538 GLU539 ASN540 ASP541 CYS542 THR543 HIS544
Ligands
Unit 3 NAG1 NAG2 BMA3 MAN4
Unit 4 NAG1 NAG2 BMA3 MAN4
Unit 5 NAG1 NAG2 BMA3 MAN4
Unit 6 MAN801 MAN802 MAN803 MAN804 NAG805 NAG810 CA811 CA812 CA813 CA814 CA815 CA816 CA817 CA818 CA819 CA820 SO4821 EDO822 EDO823 EDO824
Unit 7 NAG601 MAN610 MAN611 MAN612 MAN613 CA614 CA615 CA616 CA617 CA618 CA619 CA620 CA621 CA622 CA623 CA624 SO4625 EDO626 EDO627
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany