Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN DESMOGLEIN-2 ECTODOMAIN
Keywords EXTRACELLULAR CADHERIN DOMAIN, CELL ADHESION, DESMOSOME, CEL
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5ERD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DESMOGLEIN-2  A 554 8642 0
2  Protein   DESMOGLEIN-2  B 559 8728 0
3  Ligand    C 3 0 77
4  Ligand    D 3 0 77
5  Ligand    E 4 0 98
6  Ligand    F 2 0 56
7  Ligand    G 3 0 77
8  Ligand    H 2 0 56
9  Ligand    I 2 0 56
10  Ligand   DESMOGLEIN-2  A 17 0 143
11  Ligand   DESMOGLEIN-2  B 15 0 105
12 Water     192 0 192
total       1356 17370 937
Proteins
Unit 1 ALA1 TRP2 ILE3 THR4 ALA5 PRO6 VAL7 ALA8 LEU9 ARG10 GLU11 GLY12 GLU13 ASP14 LEU15 SER16 LYS17 LYS18 ASN19 PRO20 ILE21 ALA22 LYS23 ILE24 HIS25 SER26 ASP27 LEU28 ALA29 GLU30 GLU31 ARG32 GLY33 LEU34 LYS35 ILE36 THR37 TYR38 LYS39 TYR40 THR41 GLY42 LYS43 GLY44 ILE45 THR46 GLU47 PRO48 PRO49 PHE50 GLY51 ILE52 PHE53 VAL54 PHE55 ASN56 LYS57 ASP58 THR59 GLY60 GLU61 LEU62 ASN63 VAL64 THR65 SER66 ILE67 LEU68 ASP69 ARG70 GLU71 GLU72 THR73 PRO74 PHE75 PHE76 LEU77 LEU78 THR79 GLY80 TYR81 ALA82 LEU83 ASP84 ALA85 ARG86 GLY87 ASN88 ASN89 VAL90 GLU91 LYS92 PRO93 LEU94 GLU95 LEU96 ARG97 ILE98 LYS99 VAL100 LEU101 ASP102 ILE103 ASN104 ASP105 ASN106 GLU107 PRO108 VAL109 PHE110 THR111 GLN112 ASP113 VAL114 PHE115 VAL116 GLY117 SER118 VAL119 GLU120 GLU121 LEU122 SER123 ALA124 ALA125 HIS126 THR127 LEU128 VAL129 MET130 LYS131 ILE132 ASN133 ALA134 THR135 ASP136 ALA137 ASP138 GLU139 PRO140 ASN141 THR142 LEU143 ASN144 SER145 LYS146 ILE147 SER148 TYR149 ARG150 ILE151 VAL152 SER153 LEU154 GLU155 PRO156 ALA157 TYR158 PRO159 PRO160 VAL161 PHE162 TYR163 LEU164 ASN165 LYS166 ASP167 THR168 GLY169 GLU170 ILE171 TYR172 THR173 THR174 SER175 VAL176 THR177 LEU178 ASP179 ARG180 GLU181 GLU182 HIS183 SER184 SER185 TYR186 THR187 LEU188 THR189 VAL190 GLU191 ALA192 ARG193 ASP194 GLY195 ASN196 GLY197 GLU198 VAL199 THR200 ASP201 LYS202 PRO203 VAL204 LYS205 GLN206 ALA207 GLN208 VAL209 GLN210 ILE211 ARG212 ILE213 LEU214 ASP215 VAL216 ASN217 ASP218 ASN219 ILE220 PRO221 VAL222 VAL223 GLU224 ASN225 LYS226 VAL227 LEU228 GLU229 GLY230 MET231 VAL232 GLU233 GLU234 ASN235 GLN236 VAL237 ASN238 VAL239 GLU240 VAL241 THR242 ARG243 ILE244 LYS245 VAL246 PHE247 ASP248 ALA249 ASP250 GLU251 ILE252 GLY253 SER254 ASP255 ASN256 TRP257 LEU258 ALA259 ASN260 PHE261 THR262 PHE263 ALA264 SER265 GLY266 ASN267 GLU268 GLY269 GLY270 TYR271 PHE272 HIS273 ILE274 GLU275 THR276 ASP277 ALA278 GLN279 THR280 ASN281 GLU282 GLY283 ILE284 VAL285 THR286 LEU287 ILE288 LYS289 GLU290 VAL291 ASP292 TYR293 GLU294 GLU295 MET296 LYS297 ASN298 LEU299 ASP300 PHE301 SER302 VAL303 ILE304 VAL305 ALA306 ASN307 LYS308 ALA309 ALA310 PHE311 HIS312 LYS313 SER314 ILE315 ARG316 SER317 LYS318 TYR319 LYS320 PRO321 THR322 PRO323 ILE324 PRO325 ILE326 LYS327 VAL328 LYS329 VAL330 LYS331 ASN332 VAL333 LYS334 GLU335 GLY336 ILE337 HIS338 PHE339 LYS340 SER341 SER342 VAL343 ILE344 SER345 ILE346 TYR347 VAL348 SER349 GLU350 SER351 MET352 ASP353 ARG354 SER355 SER356 LYS357 GLY358 GLN359 ILE360 ILE361 GLY362 ASN363 PHE364 GLN365 ALA366 PHE367 ASP368 GLU369 ASP370 THR371 GLY372 LEU373 PRO374 ALA375 HIS376 ALA377 ARG378 TYR379 VAL380 LYS381 LEU382 GLU383 ASP384 ARG385 ASP386 ASN387 TRP388 ILE389 SER390 VAL391 ASP392 SER393 VAL394 THR395 SER396 GLU397 ILE398 LYS399 LEU400 ALA401 LYS402 LEU403 PRO404 ASP405 PHE406 GLU407 SER408 ARG409 TYR410 VAL411 GLN412 ASN413 GLY414 THR415 TYR416 THR417 VAL418 LYS419 ILE420 VAL421 ALA422 ILE423 SER424 GLU425 ASP426 TYR427 PRO428 ARG429 LYS430 THR431 ILE432 THR433 GLY434 THR435 VAL436 LEU437 ILE438 ASN439 VAL440 GLU441 ASP442 ILE443 ASN444 ASP445 ASN446 CYS447 PRO448 THR449 LEU450 ILE451 GLU452 PRO453 VAL454 GLN455 THR456 ILE457 CYS458 HIS459 ASP460 ALA461 GLU462 TYR463 VAL464 ASN465 VAL466 THR467 ALA468 GLU469 ASP470 LEU471 ASP472 GLY473 HIS474 PRO475 ASN476 SER477 GLY478 PRO479 PHE480 SER481 PHE482 SER483 VAL484 ILE485 ASP486 LYS487 PRO488 PRO489 GLY490 MET491 ALA492 GLU493 LYS494 TRP495 LYS496 ILE497 ALA498 ARG499 GLN500 GLU501 SER502 THR503 SER504 VAL505 LEU506 LEU507 GLN508 GLN509 SER510 GLU511 LYS512 LYS513 LEU514 GLY515 ARG516 SER517 GLU518 ILE519 GLN520 PHE521 LEU522 ILE523 SER524 ASP525 ASN526 GLN527 GLY528 PHE529 SER530 CYS531 PRO532 GLU533 LYS534 GLN535 VAL536 LEU537 THR538 LEU539 THR540 VAL541 CYS542 GLU543 CYS544 LEU545 HIS546 GLY547 SER548 GLY549 CYS550 ARG551 GLU552 ALA553 HIS554
Unit 2 ALA1 TRP2 ILE3 THR4 ALA5 PRO6 VAL7 ALA8 LEU9 ARG10 GLU11 GLY12 GLU13 ASP14 LEU15 SER16 LYS17 LYS18 ASN19 PRO20 ILE21 ALA22 LYS23 ILE24 HIS25 SER26 ASP27 LEU28 ALA29 GLU30 GLU31 ARG32 GLY33 LEU34 LYS35 ILE36 THR37 TYR38 LYS39 TYR40 THR41 GLY42 LYS43 GLY44 ILE45 THR46 GLU47 PRO48 PRO49 PHE50 GLY51 ILE52 PHE53 VAL54 PHE55 ASN56 LYS57 ASP58 THR59 GLY60 GLU61 LEU62 ASN63 VAL64 THR65 SER66 ILE67 LEU68 ASP69 ARG70 GLU71 GLU72 THR73 PRO74 PHE75 PHE76 LEU77 LEU78 THR79 GLY80 TYR81 ALA82 LEU83 ASP84 ALA85 ARG86 GLY87 ASN88 ASN89 VAL90 GLU91 LYS92 PRO93 LEU94 GLU95 LEU96 ARG97 ILE98 LYS99 VAL100 LEU101 ASP102 ILE103 ASN104 ASP105 ASN106 GLU107 PRO108 VAL109 PHE110 THR111 GLN112 ASP113 VAL114 PHE115 VAL116 GLY117 SER118 VAL119 GLU120 GLU121 LEU122 SER123 ALA124 ALA125 HIS126 THR127 LEU128 VAL129 MET130 LYS131 ILE132 ASN133 ALA134 THR135 ASP136 ALA137 ASP138 GLU139 PRO140 ASN141 THR142 LEU143 ASN144 SER145 LYS146 ILE147 SER148 TYR149 ARG150 ILE151 VAL152 SER153 LEU154 GLU155 PRO156 ALA157 TYR158 PRO159 PRO160 VAL161 PHE162 TYR163 LEU164 ASN165 LYS166 ASP167 THR168 GLY169 GLU170 ILE171 TYR172 THR173 THR174 SER175 VAL176 THR177 LEU178 ASP179 ARG180 GLU181 GLU182 HIS183 SER184 SER185 TYR186 THR187 LEU188 THR189 VAL190 GLU191 ALA192 ARG193 ASP194 GLY195 ASN196 GLY197 GLU198 VAL199 THR200 ASP201 LYS202 PRO203 VAL204 LYS205 GLN206 ALA207 GLN208 VAL209 GLN210 ILE211 ARG212 ILE213 LEU214 ASP215 VAL216 ASN217 ASP218 ASN219 ILE220 PRO221 VAL222 VAL223 GLU224 ASN225 LYS226 VAL227 LEU228 GLU229 GLY230 MET231 VAL232 GLU233 GLU234 ASN235 GLN236 VAL237 ASN238 VAL239 GLU240 VAL241 THR242 ARG243 ILE244 LYS245 VAL246 PHE247 ASP248 ALA249 ASP250 GLU251 ILE252 GLY253 SER254 ASP255 ASN256 TRP257 LEU258 ALA259 ASN260 PHE261 THR262 PHE263 ALA264 SER265 GLY266 ASN267 GLU268 GLY269 GLY270 TYR271 PHE272 HIS273 ILE274 GLU275 THR276 ASP277 ALA278 GLN279 THR280 ASN281 GLU282 GLY283 ILE284 VAL285 THR286 LEU287 ILE288 LYS289 GLU290 VAL291 ASP292 TYR293 GLU294 GLU295 MET296 LYS297 ASN298 LEU299 ASP300 PHE301 SER302 VAL303 ILE304 VAL305 ALA306 ASN307 LYS308 ALA309 ALA310 PHE311 HIS312 LYS313 SER314 ILE315 ARG316 SER317 LYS318 TYR319 LYS320 PRO321 THR322 PRO323 ILE324 PRO325 ILE326 LYS327 VAL328 LYS329 VAL330 LYS331 ASN332 VAL333 LYS334 GLU335 GLY336 ILE337 HIS338 PHE339 LYS340 SER341 SER342 VAL343 ILE344 SER345 ILE346 TYR347 VAL348 SER349 GLU350 SER351 MET352 ASP353 ARG354 SER355 SER356 LYS357 GLY358 GLN359 ILE360 ILE361 GLY362 ASN363 PHE364 GLN365 ALA366 PHE367 ASP368 GLU369 ASP370 THR371 GLY372 LEU373 PRO374 ALA375 HIS376 ALA377 ARG378 TYR379 VAL380 LYS381 LEU382 GLU383 ASP384 ARG385 ASP386 ASN387 TRP388 ILE389 SER390 VAL391 ASP392 SER393 VAL394 THR395 SER396 GLU397 ILE398 LYS399 LEU400 ALA401 LYS402 LEU403 PRO404 ASP405 PHE406 GLU407 SER408 ARG409 TYR410 VAL411 GLN412 ASN413 GLY414 THR415 TYR416 THR417 VAL418 LYS419 ILE420 VAL421 ALA422 ILE423 SER424 GLU425 ASP426 TYR427 PRO428 ARG429 LYS430 THR431 ILE432 THR433 GLY434 THR435 VAL436 LEU437 ILE438 ASN439 VAL440 GLU441 ASP442 ILE443 ASN444 ASP445 ASN446 CYS447 PRO448 THR449 LEU450 ILE451 GLU452 PRO453 VAL454 GLN455 THR456 ILE457 CYS458 HIS459 ASP460 ALA461 GLU462 TYR463 VAL464 ASN465 VAL466 THR467 ALA468 GLU469 ASP470 LEU471 ASP472 GLY473 HIS474 PRO475 ASN476 SER477 GLY478 PRO479 PHE480 SER481 PHE482 SER483 VAL484 ILE485 ASP486 LYS487 PRO488 PRO489 GLY490 MET491 ALA492 GLU493 LYS494 TRP495 LYS496 ILE497 ALA498 ARG499 GLN500 GLU501 SER502 THR503 SER504 VAL505 LEU506 LEU507 GLN508 GLN509 SER510 GLU511 LYS512 LYS513 LEU514 GLY515 ARG516 SER517 GLU518 ILE519 GLN520 PHE521 LEU522 ILE523 SER524 ASP525 ASN526 GLN527 GLY528 PHE529 SER530 CYS531 PRO532 GLU533 LYS534 GLN535 VAL536 LEU537 THR538 LEU539 THR540 VAL541 CYS542 GLU543 CYS544 LEU545 HIS546 GLY547 SER548 GLY549 CYS550 ARG551 GLU552 ALA553 HIS554 HIS555 HIS556 HIS557 HIS558 HIS559
Ligands
Unit 3 NAG1 NAG2 BMA3
Unit 4 NAG1 NAG2 BMA3
Unit 5 NAG1 NAG2 BMA3 FUC4
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2 BMA3
Unit 8 NAG1 NAG2
Unit 9 NAG1 NAG2
Unit 10 NAG601 NAG608 MAN613 MAN614 MAN615 CA616 CA617 CA618 CA619 CA620 CA621 CA622 CA623 CA624 CA625 CA626 EDO627
Unit 11 MAN901 MAN902 MAN903 NAG911 CA914 CA915 CA916 CA917 CA918 CA919 CA920 CA921 CA922 CA923 CA924
Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany