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Sequence, Chains, Asymmetric and Biological Units

Title CHOLERA TOXIN EL TOR B-PENTAMER IN COMPLEX WITH A-PENTASACCH
Keywords CHOLERA TOXIN B-PENTAMER, HUMAN MILK OLIGOSACCHARIDE, COMPLE GROUP OLIGOSACCHARIDE/ANTIGEN, TOXIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5ELF     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CHOLERA ENTEROTOXIN SUBUNIT B  A 103 817 0
2  Protein   CHOLERA ENTEROTOXIN SUBUNIT B  B 103 817 0
3  Protein   CHOLERA ENTEROTOXIN SUBUNIT B  C 103 817 0
4  Protein   CHOLERA ENTEROTOXIN SUBUNIT B  D 103 817 0
5  Protein   CHOLERA ENTEROTOXIN SUBUNIT B  E 103 817 0
6  Protein   CHOLERA ENTEROTOXIN SUBUNIT B  F 103 817 0
7  Protein   CHOLERA ENTEROTOXIN SUBUNIT B  G 103 817 0
8  Protein   CHOLERA ENTEROTOXIN SUBUNIT B  H 103 817 0
9  Protein   CHOLERA ENTEROTOXIN SUBUNIT B  I 103 817 0
10  Protein   CHOLERA ENTEROTOXIN SUBUNIT B  J 103 817 0
11  Ligand    K 5 0 57
12  Ligand    L 5 0 57
13  Ligand    M 5 0 57
14  Ligand    N 5 0 57
15  Ligand    O 5 0 57
16  Ligand    P 5 0 57
17  Ligand    Q 5 0 57
18  Ligand   CHOLERA ENTEROTOXIN SUBUNIT B  A 4 0 24
19  Ligand   CHOLERA ENTEROTOXIN SUBUNIT B  B 5 0 35
20  Ligand   CHOLERA ENTEROTOXIN SUBUNIT B  C 4 0 24
21  Ligand   CHOLERA ENTEROTOXIN SUBUNIT B  D 5 0 36
22  Ligand   CHOLERA ENTEROTOXIN SUBUNIT B  E 4 0 24
23  Ligand   CHOLERA ENTEROTOXIN SUBUNIT B  F 1 0 13
24  Ligand   CHOLERA ENTEROTOXIN SUBUNIT B  G 1 0 12
25  Ligand   CHOLERA ENTEROTOXIN SUBUNIT B  H 1 0 11
26 Water     1194 0 1194
total       2284 8170 1772
Proteins
Unit 1 THR1 PRO2 GLN3 ASN4 ILE5 THR6 ASP7 LEU8 CYS9 ALA10 GLU11 TYR12 HIS13 ASN14 THR15 GLN16 ILE17 TYR18 THR19 LEU20 ASN21 ASP22 LYS23 ILE24 PHE25 SER26 TYR27 THR28 GLU29 SER30 LEU31 ALA32 GLY33 LYS34 ARG35 GLU36 MET37 ALA38 ILE39 ILE40 THR41 PHE42 LYS43 ASN44 GLY45 ALA46 ILE47 PHE48 GLN49 VAL50 GLU51 VAL52 PRO53 GLY54 SER55 GLN56 HIS57 ILE58 ASP59 SER60 GLN61 LYS62 LYS63 ALA64 ILE65 GLU66 ARG67 MET68 LYS69 ASP70 THR71 LEU72 ARG73 ILE74 ALA75 TYR76 LEU77 THR78 GLU79 ALA80 LYS81 VAL82 GLU83 LYS84 LEU85 CYS86 VAL87 TRP88 ASN89 ASN90 LYS91 THR92 PRO93 HIS94 ALA95 ILE96 ALA97 ALA98 ILE99 SER100 MET101 ALA102 ASN103
Unit 2 THR1 PRO2 GLN3 ASN4 ILE5 THR6 ASP7 LEU8 CYS9 ALA10 GLU11 TYR12 HIS13 ASN14 THR15 GLN16 ILE17 TYR18 THR19 LEU20 ASN21 ASP22 LYS23 ILE24 PHE25 SER26 TYR27 THR28 GLU29 SER30 LEU31 ALA32 GLY33 LYS34 ARG35 GLU36 MET37 ALA38 ILE39 ILE40 THR41 PHE42 LYS43 ASN44 GLY45 ALA46 ILE47 PHE48 GLN49 VAL50 GLU51 VAL52 PRO53 GLY54 SER55 GLN56 HIS57 ILE58 ASP59 SER60 GLN61 LYS62 LYS63 ALA64 ILE65 GLU66 ARG67 MET68 LYS69 ASP70 THR71 LEU72 ARG73 ILE74 ALA75 TYR76 LEU77 THR78 GLU79 ALA80 LYS81 VAL82 GLU83 LYS84 LEU85 CYS86 VAL87 TRP88 ASN89 ASN90 LYS91 THR92 PRO93 HIS94 ALA95 ILE96 ALA97 ALA98 ILE99 SER100 MET101 ALA102 ASN103
Unit 3 THR1 PRO2 GLN3 ASN4 ILE5 THR6 ASP7 LEU8 CYS9 ALA10 GLU11 TYR12 HIS13 ASN14 THR15 GLN16 ILE17 TYR18 THR19 LEU20 ASN21 ASP22 LYS23 ILE24 PHE25 SER26 TYR27 THR28 GLU29 SER30 LEU31 ALA32 GLY33 LYS34 ARG35 GLU36 MET37 ALA38 ILE39 ILE40 THR41 PHE42 LYS43 ASN44 GLY45 ALA46 ILE47 PHE48 GLN49 VAL50 GLU51 VAL52 PRO53 GLY54 SER55 GLN56 HIS57 ILE58 ASP59 SER60 GLN61 LYS62 LYS63 ALA64 ILE65 GLU66 ARG67 MET68 LYS69 ASP70 THR71 LEU72 ARG73 ILE74 ALA75 TYR76 LEU77 THR78 GLU79 ALA80 LYS81 VAL82 GLU83 LYS84 LEU85 CYS86 VAL87 TRP88 ASN89 ASN90 LYS91 THR92 PRO93 HIS94 ALA95 ILE96 ALA97 ALA98 ILE99 SER100 MET101 ALA102 ASN103
Unit 4 THR1 PRO2 GLN3 ASN4 ILE5 THR6 ASP7 LEU8 CYS9 ALA10 GLU11 TYR12 HIS13 ASN14 THR15 GLN16 ILE17 TYR18 THR19 LEU20 ASN21 ASP22 LYS23 ILE24 PHE25 SER26 TYR27 THR28 GLU29 SER30 LEU31 ALA32 GLY33 LYS34 ARG35 GLU36 MET37 ALA38 ILE39 ILE40 THR41 PHE42 LYS43 ASN44 GLY45 ALA46 ILE47 PHE48 GLN49 VAL50 GLU51 VAL52 PRO53 GLY54 SER55 GLN56 HIS57 ILE58 ASP59 SER60 GLN61 LYS62 LYS63 ALA64 ILE65 GLU66 ARG67 MET68 LYS69 ASP70 THR71 LEU72 ARG73 ILE74 ALA75 TYR76 LEU77 THR78 GLU79 ALA80 LYS81 VAL82 GLU83 LYS84 LEU85 CYS86 VAL87 TRP88 ASN89 ASN90 LYS91 THR92 PRO93 HIS94 ALA95 ILE96 ALA97 ALA98 ILE99 SER100 MET101 ALA102 ASN103
Unit 5 THR1 PRO2 GLN3 ASN4 ILE5 THR6 ASP7 LEU8 CYS9 ALA10 GLU11 TYR12 HIS13 ASN14 THR15 GLN16 ILE17 TYR18 THR19 LEU20 ASN21 ASP22 LYS23 ILE24 PHE25 SER26 TYR27 THR28 GLU29 SER30 LEU31 ALA32 GLY33 LYS34 ARG35 GLU36 MET37 ALA38 ILE39 ILE40 THR41 PHE42 LYS43 ASN44 GLY45 ALA46 ILE47 PHE48 GLN49 VAL50 GLU51 VAL52 PRO53 GLY54 SER55 GLN56 HIS57 ILE58 ASP59 SER60 GLN61 LYS62 LYS63 ALA64 ILE65 GLU66 ARG67 MET68 LYS69 ASP70 THR71 LEU72 ARG73 ILE74 ALA75 TYR76 LEU77 THR78 GLU79 ALA80 LYS81 VAL82 GLU83 LYS84 LEU85 CYS86 VAL87 TRP88 ASN89 ASN90 LYS91 THR92 PRO93 HIS94 ALA95 ILE96 ALA97 ALA98 ILE99 SER100 MET101 ALA102 ASN103
Unit 6 THR1 PRO2 GLN3 ASN4 ILE5 THR6 ASP7 LEU8 CYS9 ALA10 GLU11 TYR12 HIS13 ASN14 THR15 GLN16 ILE17 TYR18 THR19 LEU20 ASN21 ASP22 LYS23 ILE24 PHE25 SER26 TYR27 THR28 GLU29 SER30 LEU31 ALA32 GLY33 LYS34 ARG35 GLU36 MET37 ALA38 ILE39 ILE40 THR41 PHE42 LYS43 ASN44 GLY45 ALA46 ILE47 PHE48 GLN49 VAL50 GLU51 VAL52 PRO53 GLY54 SER55 GLN56 HIS57 ILE58 ASP59 SER60 GLN61 LYS62 LYS63 ALA64 ILE65 GLU66 ARG67 MET68 LYS69 ASP70 THR71 LEU72 ARG73 ILE74 ALA75 TYR76 LEU77 THR78 GLU79 ALA80 LYS81 VAL82 GLU83 LYS84 LEU85 CYS86 VAL87 TRP88 ASN89 ASN90 LYS91 THR92 PRO93 HIS94 ALA95 ILE96 ALA97 ALA98 ILE99 SER100 MET101 ALA102 ASN103
Unit 7 THR1 PRO2 GLN3 ASN4 ILE5 THR6 ASP7 LEU8 CYS9 ALA10 GLU11 TYR12 HIS13 ASN14 THR15 GLN16 ILE17 TYR18 THR19 LEU20 ASN21 ASP22 LYS23 ILE24 PHE25 SER26 TYR27 THR28 GLU29 SER30 LEU31 ALA32 GLY33 LYS34 ARG35 GLU36 MET37 ALA38 ILE39 ILE40 THR41 PHE42 LYS43 ASN44 GLY45 ALA46 ILE47 PHE48 GLN49 VAL50 GLU51 VAL52 PRO53 GLY54 SER55 GLN56 HIS57 ILE58 ASP59 SER60 GLN61 LYS62 LYS63 ALA64 ILE65 GLU66 ARG67 MET68 LYS69 ASP70 THR71 LEU72 ARG73 ILE74 ALA75 TYR76 LEU77 THR78 GLU79 ALA80 LYS81 VAL82 GLU83 LYS84 LEU85 CYS86 VAL87 TRP88 ASN89 ASN90 LYS91 THR92 PRO93 HIS94 ALA95 ILE96 ALA97 ALA98 ILE99 SER100 MET101 ALA102 ASN103
Unit 8 THR1 PRO2 GLN3 ASN4 ILE5 THR6 ASP7 LEU8 CYS9 ALA10 GLU11 TYR12 HIS13 ASN14 THR15 GLN16 ILE17 TYR18 THR19 LEU20 ASN21 ASP22 LYS23 ILE24 PHE25 SER26 TYR27 THR28 GLU29 SER30 LEU31 ALA32 GLY33 LYS34 ARG35 GLU36 MET37 ALA38 ILE39 ILE40 THR41 PHE42 LYS43 ASN44 GLY45 ALA46 ILE47 PHE48 GLN49 VAL50 GLU51 VAL52 PRO53 GLY54 SER55 GLN56 HIS57 ILE58 ASP59 SER60 GLN61 LYS62 LYS63 ALA64 ILE65 GLU66 ARG67 MET68 LYS69 ASP70 THR71 LEU72 ARG73 ILE74 ALA75 TYR76 LEU77 THR78 GLU79 ALA80 LYS81 VAL82 GLU83 LYS84 LEU85 CYS86 VAL87 TRP88 ASN89 ASN90 LYS91 THR92 PRO93 HIS94 ALA95 ILE96 ALA97 ALA98 ILE99 SER100 MET101 ALA102 ASN103
Unit 9 THR1 PRO2 GLN3 ASN4 ILE5 THR6 ASP7 LEU8 CYS9 ALA10 GLU11 TYR12 HIS13 ASN14 THR15 GLN16 ILE17 TYR18 THR19 LEU20 ASN21 ASP22 LYS23 ILE24 PHE25 SER26 TYR27 THR28 GLU29 SER30 LEU31 ALA32 GLY33 LYS34 ARG35 GLU36 MET37 ALA38 ILE39 ILE40 THR41 PHE42 LYS43 ASN44 GLY45 ALA46 ILE47 PHE48 GLN49 VAL50 GLU51 VAL52 PRO53 GLY54 SER55 GLN56 HIS57 ILE58 ASP59 SER60 GLN61 LYS62 LYS63 ALA64 ILE65 GLU66 ARG67 MET68 LYS69 ASP70 THR71 LEU72 ARG73 ILE74 ALA75 TYR76 LEU77 THR78 GLU79 ALA80 LYS81 VAL82 GLU83 LYS84 LEU85 CYS86 VAL87 TRP88 ASN89 ASN90 LYS91 THR92 PRO93 HIS94 ALA95 ILE96 ALA97 ALA98 ILE99 SER100 MET101 ALA102 ASN103
Unit 10 THR1 PRO2 GLN3 ASN4 ILE5 THR6 ASP7 LEU8 CYS9 ALA10 GLU11 TYR12 HIS13 ASN14 THR15 GLN16 ILE17 TYR18 THR19 LEU20 ASN21 ASP22 LYS23 ILE24 PHE25 SER26 TYR27 THR28 GLU29 SER30 LEU31 ALA32 GLY33 LYS34 ARG35 GLU36 MET37 ALA38 ILE39 ILE40 THR41 PHE42 LYS43 ASN44 GLY45 ALA46 ILE47 PHE48 GLN49 VAL50 GLU51 VAL52 PRO53 GLY54 SER55 GLN56 HIS57 ILE58 ASP59 SER60 GLN61 LYS62 LYS63 ALA64 ILE65 GLU66 ARG67 MET68 LYS69 ASP70 THR71 LEU72 ARG73 ILE74 ALA75 TYR76 LEU77 THR78 GLU79 ALA80 LYS81 VAL82 GLU83 LYS84 LEU85 CYS86 VAL87 TRP88 ASN89 ASN90 LYS91 THR92 PRO93 HIS94 ALA95 ILE96 ALA97 ALA98 ILE99 SER100 MET101 ALA102 ASN103
Ligands
Unit 11 GLC1 GAL2 FUC3 A2G4 FUC5
Unit 12 BGC1 GAL2 FUC3 A2G4 FUC5
Unit 13 GLC1 GAL2 FUC3 A2G4 FUC5
Unit 14 BGC1 GAL2 FUC3 A2G4 FUC5
Unit 15 BGC1 GAL2 FUC3 A2G4 FUC5
Unit 16 GLC1 GAL2 FUC3 A2G4 FUC5
Unit 17 GLC1 GAL2 FUC3 A2G4 FUC5
Unit 18 CA201 BCN202 CA203 BCN204
Unit 19 BCN201 CA202 FUC203 BCN204 CA205
Unit 20 CA201 BCN202 BCN203 CA204
Unit 21 CA201 BCN202 BCN203 CA204 GLC210
Unit 22 BCN201 CA202 BCN203 CA204
Unit 23 PG4201
Unit 24 GLC206
Unit 25 FUC201
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany