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Sequence, Chains, Asymmetric and Biological Units

Title HUMAN PRDM9 ALLELE-A ZNF DOMAIN WITH ASSOCIATED RECOMBINATIO DNA SEQUENCE I
Keywords PROTEIN-DNA COMPLEX, RECOMBINATION, TRANSCRIPTION-DNA COMPLE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5EI9     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Other macromolecule   DNA (5'- D(*AP*TP*CP*CP*AP*CP*GP*TP*GP*GP*CP*TP*AP*GP*GP*GP*AP*GP*GP 3')  A 21 431 0
2  Protein   HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9  F 110 912 0
3  Protein   HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9  E 111 917 0
4  Other macromolecule   DNA (5'- D(*AP*TP*CP*CP*AP*CP*GP*TP*GP*GP*CP*TP*AP*GP*GP*GP*AP*GP*GP 3')  C 21 431 0
5  Other macromolecule   DNA (5'- D(*TP*GP*GP*CP*CP*TP*CP*CP*CP*TP*AP*GP*CP*CP*AP*CP*GP*TP*GP 3')  B 21 423 0
6  Other macromolecule   DNA (5'- D(*TP*GP*GP*CP*CP*TP*CP*CP*CP*TP*AP*GP*CP*CP*AP*CP*GP*TP*GP 3')  D 21 424 0
7  Ligand   HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9  F 4 0 4
8  Ligand   HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9  E 4 0 4
9 Water     168 0 168
total       481 3538 176
Proteins
Unit 2 LYS717 PRO718 TYR719 VAL720 CYS721 ARG722 GLU723 CYS724 GLY725 ARG726 GLY727 PHE728 SER729 ASN730 LYS731 SER732 HIS733 LEU734 LEU735 ARG736 HIS737 GLN738 ARG739 THR740 HIS741 THR742 GLY743 GLU744 LYS745 PRO746 TYR747 VAL748 CYS749 ARG750 GLU751 CYS752 GLY753 ARG754 GLY755 PHE756 ARG757 ASP758 LYS759 SER760 HIS761 LEU762 LEU763 ARG764 HIS765 GLN766 ARG767 THR768 HIS769 THR770 GLY771 GLU772 LYS773 PRO774 TYR775 VAL776 CYS777 ARG778 GLU779 CYS780 GLY781 ARG782 GLY783 PHE784 ARG785 ASP786 LYS787 SER788 ASN789 LEU790 LEU791 SER792 HIS793 GLN794 ARG795 THR796 HIS797 THR798 GLY799 GLU800 LYS801 PRO802 TYR803 VAL804 CYS805 ARG806 GLU807 CYS808 GLY809 ARG810 GLY811 PHE812 SER813 ASN814 LYS815 SER816 HIS817 LEU818 LEU819 ARG820 HIS821 GLN822 ARG823 THR824 HIS825 THR826
Unit 3 GLU716 LYS717 PRO718 TYR719 VAL720 CYS721 ARG722 GLU723 CYS724 GLY725 ARG726 GLY727 PHE728 SER729 ASN730 LYS731 SER732 HIS733 LEU734 LEU735 ARG736 HIS737 GLN738 ARG739 THR740 HIS741 THR742 GLY743 GLU744 LYS745 PRO746 TYR747 VAL748 CYS749 ARG750 GLU751 CYS752 GLY753 ARG754 GLY755 PHE756 ARG757 ASP758 LYS759 SER760 HIS761 LEU762 LEU763 ARG764 HIS765 GLN766 ARG767 THR768 HIS769 THR770 GLY771 GLU772 LYS773 PRO774 TYR775 VAL776 CYS777 ARG778 GLU779 CYS780 GLY781 ARG782 GLY783 PHE784 ARG785 ASP786 LYS787 SER788 ASN789 LEU790 LEU791 SER792 HIS793 GLN794 ARG795 THR796 HIS797 THR798 GLY799 GLU800 LYS801 PRO802 TYR803 VAL804 CYS805 ARG806 GLU807 CYS808 GLY809 ARG810 GLY811 PHE812 SER813 ASN814 LYS815 SER816 HIS817 LEU818 LEU819 ARG820 HIS821 GLN822 ARG823 THR824 HIS825 THR826
Other macromolecules
Unit 1 DA1 DT2 DC3 DC4 DA5 DC6 DG7 DT8 DG9 DG10 DC11 DT12 DA13 DG14 DG15 DG16 DA17 DG18 DG19 DC20 DC21
Unit 4 DA1 DT2 DC3 DC4 DA5 DC6 DG7 DT8 DG9 DG10 DC11 DT12 DA13 DG14 DG15 DG16 DA17 DG18 DG19 DC20 DC21
Unit 5 DT22 DG23 DG24 DC25 DC26 DT27 DC28 DC29 DC30 DT31 DA32 DG33 DC34 DC35 DA36 DC37 DG38 DT39 DG40 DG41 DA42
Unit 6 DT22 DG23 DG24 DC25 DC26 DT27 DC28 DC29 DC30 DT31 DA32 DG33 DC34 DC35 DA36 DC37 DG38 DT39 DG40 DG41 DA42
Ligands
Unit 7 ZN1001 ZN1002 ZN1003 ZN1004
Unit 8 ZN1001 ZN1002 ZN1003 ZN1004
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany