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Sequence, Chains, Asymmetric and Biological Units

Title RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 14.2 MG
Keywords PROTEIN-RNA COMPLEX, RADIATION DAMAGE, RNA BINDING PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5EEZ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  A 69 535 0
2  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  B 68 527 0
3  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  C 69 535 0
4  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  D 69 536 0
5  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  E 68 527 0
6  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  F 69 536 0
7  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  G 68 527 0
8  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  H 68 527 0
9  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  I 68 527 0
10  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  J 67 523 0
11  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  K 68 527 0
12  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  L 70 542 0
13  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  M 70 542 0
14  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  N 70 542 0
15  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  O 70 542 0
16  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  P 70 542 0
17  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  Q 70 542 0
18  Protein    R 70 542 0
19  Protein    S 70 542 0
20  Protein    T 70 542 0
21  Protein    U 70 542 0
22  Protein    V 70 542 0
23  RNA    W 44 968 0
24  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  A 1 0 15
25  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  B 1 0 15
26  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  C 1 0 15
27  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  D 1 0 15
28  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  E 1 0 15
29  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  F 1 0 15
30  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  G 1 0 15
31  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  H 1 0 15
32  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  I 1 0 15
33  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  J 1 0 15
34  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  K 1 0 15
35  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  L 1 0 15
36  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  M 1 0 15
37  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  N 1 0 15
38  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  O 1 0 15
39  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  P 1 0 15
40  Protein   TRANSCRIPTION ATTENUATION PROTEIN MTRB  Q 1 0 15
41  Protein    R 1 0 15
42  Protein    S 1 0 15
43  Protein    T 1 0 15
44  Protein    U 1 0 15
45  Protein    V 1 0 15
46 Water     743 0 743
total       2330 12757 1073

Proteins
Unit 1 ASN6 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 2 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 3 ASN6 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 4 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74 LYS75
Unit 5 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 6 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74 LYS75
Unit 7 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 8 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 9 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 10 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73
Unit 11 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 12 THR5 ASN6 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 13 THR5 ASN6 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 14 THR5 ASN6 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 15 THR5 ASN6 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 16 THR5 ASN6 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 17 THR5 ASN6 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 18 THR5 ASN6 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 19 THR5 ASN6 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 20 THR5 ASN6 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 21 THR5 ASN6 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 22 THR5 ASN6 SER7 ASP8 PHE9 VAL10 VAL11 ILE12 LYS13 ALA14 LEU15 GLU16 ASP17 GLY18 VAL19 ASN20 VAL21 ILE22 GLY23 LEU24 THR25 ARG26 GLY27 ALA28 ASP29 THR30 ARG31 PHE32 HIS33 HIS34 SER35 GLU36 LYS37 LEU38 ASP39 LYS40 GLY41 GLU42 VAL43 LEU44 ILE45 ALA46 GLN47 PHE48 THR49 GLU50 HIS51 THR52 SER53 ALA54 ILE55 LYS56 VAL57 ARG58 GLY59 LYS60 ALA61 TYR62 ILE63 GLN64 THR65 ARG66 HIS67 GLY68 VAL69 ILE70 GLU71 SER72 GLU73 GLY74
Unit 24 TRP101
Unit 25 TRP101
Unit 26 TRP101
Unit 27 TRP101
Unit 28 TRP101
Unit 29 TRP101
Unit 30 TRP101
Unit 31 TRP101
Unit 32 TRP101
Unit 33 TRP101
Unit 34 TRP101
Unit 35 TRP101
Unit 36 TRP101
Unit 37 TRP101
Unit 38 TRP101
Unit 39 TRP101
Unit 40 TRP101
Unit 41 TRP101
Unit 42 TRP101
Unit 43 TRP101
Unit 44 TRP101
Unit 45 TRP101

Nucleic acids
Unit 23 G101 A102 G103 U104 G106 A107 G108 U109 G111 A112 G113 U114 G116 A117 G118 U119 G121 A122 G123 U124 G126 A127 G128 U129 G131 A132 G133 U134 G136 A137 G138 U139 G141 A142 G143 U144 G146 A147 G148 U149 G151 A152 G153 U154

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany