5E9D - Sequence, Chains, Asymmetric and Biological Units

• Title: RD-1 MART-1 HIGH BOUND TO MART-1 DECAMERIC PEPTIDE (ELA) IN WITH HLA-A2
• Keywords: SINGLE CHAIN TCR-PMHC COMPLEX, PROTEIN BINDING
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5E9D	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein		A	266	2174	0
2	Protein	BETA-2-MICROGLOBULIN	B	98	816	0
3	Protein	MELANOMA DERIVED MART-1 PEPTIDE	C	10	68	0
4	Protein	A6-TCR VALPHA	D	110	849	0
5	Protein	A6-TCR VBETA	E	115	885	0
6	Protein		F	272	2219	0
7	Protein	BETA-2-MICROGLOBULIN	G	98	821	0
8	Protein	MELANOMA DERIVED MART-1 PEPTIDE	H	10	68	0
9	Protein	A6-TCR VALPHA	I	108	834	0
10	Protein	A6-TCR VBETA	J	114	876	0
11	Water			73	0	73
total				1274	9610	73

Proteins

Unit 1	GLY 1 SER 2 HIS 3 SER 4 MET 5 ARG 6 TYR 7 PHE 8 PHE 9 THR 10 SER 11 VAL 12 SER 13 ARG 14 PRO 15 GLY 16 ARG 17 GLY 18 GLU 19 PRO 20 ARG 21 PHE 22 ILE 23 ALA 24 VAL 25 GLY 26 TYR 27 VAL 28 ASP 29 ASP 30 THR 31 GLN 32 PHE 33 VAL 34 ARG 35 PHE 36 ASP 37 SER 38 ASP 39 ALA 40 ALA 41 SER 42 GLN 43 ARG 44 MET 45 GLU 46 PRO 47 ARG 48 ALA 49 PRO 50 TRP 51 ILE 52 GLU 53 GLN 54 GLU 55 GLY 56 PRO 57 GLU 58 TYR 59 TRP 60 ASP 61 GLY 62 GLU 63 THR 64 ARG 65 LYS 66 VAL 67 LYS 68 ALA 69 HIS 70 SER 71 GLN 72 THR 73 HIS 74 ARG 75 VAL 76 ASP 77 LEU 78 GLY 79 THR 80 LEU 81 ARG 82 GLY 83 TYR 84 TYR 85 ASN 86 GLN 87 SER 88 GLU 89 ALA 90 GLY 91 SER 92 HIS 93 THR 94 VAL 95 GLN 96 ARG 97 MET 98 TYR 99 GLY 100 CYS 101 ASP 102 VAL 103 GLY 104 SER 105 ASP 106 TRP 107 ARG 108 PHE 109 LEU 110 ARG 111 GLY 112 TYR 113 HIS 114 GLN 115 TYR 116 ALA 117 TYR 118 ASP 119 GLY 120 LYS 121 ASP 122 TYR 123 ILE 124 ALA 125 LEU 126 LYS 127 GLU 128 ASP 129 LEU 130 ARG 131 SER 132 TRP 133 THR 134 ALA 135 ALA 136 ASP 137 MET 138 ALA 139 ALA 140 GLN 141 THR 142 THR 143 LYS 144 HIS 145 LYS 146 TRP 147 GLU 148 ALA 149 ALA 150 HIS 151 VAL 152 ALA 153 GLU 154 GLN 155 LEU 156 ARG 157 ALA 158 TYR 159 LEU 160 GLU 161 GLY 162 THR 163 CYS 164 VAL 165 GLU 166 TRP 167 LEU 168 ARG 169 ARG 170 TYR 171 LEU 172 GLU 173 ASN 174 GLY 175 LYS 176 GLU 177 THR 178 LEU 179 GLN 180 ARG 181 THR 182 ASP 183 ALA 184 PRO 185 LYS 186 THR 187 HIS 188 MET 189 THR 190 HIS 191 HIS 192 ALA 193 VAL 194 SER 195 ASP 196 HIS 197 GLU 198 ALA 199 THR 200 LEU 201 ARG 202 CYS 203 TRP 204 ALA 205 LEU 206 SER 207 PHE 208 TYR 209 PRO 210 ALA 211 GLU 212 ILE 213 THR 214 LEU 215 THR 216 TRP 217 GLN 218 THR 228 GLU 229 LEU 230 VAL 231 GLU 232 THR 233 ARG 234 PRO 235 ALA 236 GLY 237 ASP 238 GLY 239 THR 240 PHE 241 GLN 242 LYS 243 TRP 244 ALA 245 ALA 246 VAL 247 VAL 248 VAL 249 PRO 250 SER 251 GLY 252 GLN 253 GLU 254 GLN 255 ARG 256 TYR 257 THR 258 CYS 259 HIS 260 VAL 261 GLN 262 HIS 263 GLU 264 GLY 265 LEU 266 PRO 267 LYS 268 PRO 269 LEU 270 THR 271 LEU 272 ARG 273 TRP 274 GLU 275
Unit 2	GLN 2 ARG 3 THR 4 PRO 5 LYS 6 ILE 7 GLN 8 VAL 9 TYR 10 SER 11 ARG 12 HIS 13 PRO 14 ALA 15 GLU 16 ASN 17 GLY 18 LYS 19 SER 20 ASN 21 PHE 22 LEU 23 ASN 24 CYS 25 TYR 26 VAL 27 SER 28 GLY 29 PHE 30 HIS 31 PRO 32 SER 33 ASP 34 ILE 35 GLU 36 VAL 37 ASP 38 LEU 39 LEU 40 LYS 41 ASN 42 GLY 43 GLU 44 ARG 45 ILE 46 GLU 47 LYS 48 VAL 49 GLU 50 HIS 51 SER 52 ASP 53 LEU 54 SER 55 PHE 56 SER 57 LYS 58 ASP 59 TRP 60 SER 61 PHE 62 TYR 63 LEU 64 LEU 65 TYR 66 TYR 67 THR 68 GLU 69 PHE 70 THR 71 PRO 72 THR 73 GLU 74 LYS 75 ASP 76 GLU 77 TYR 78 ALA 79 CYS 80 ARG 81 VAL 82 ASN 83 HIS 84 VAL 85 THR 86 LEU 87 SER 88 GLN 89 PRO 90 LYS 91 ILE 92 VAL 93 LYS 94 TRP 95 ASP 96 ARG 97 ASP 98 MET 99
Unit 3	GLU 1 LEU 2 ALA 3 GLY 4 ILE 5 GLY 6 ILE 7 LEU 8 THR 9 VAL 10
Unit 4	GLU 2 VAL 3 GLU 4 GLN 5 ASN 6 SER 7 GLY 8 PRO 9 LEU 10 SER 11 VAL 12 PRO 13 GLU 14 GLY 15 ALA 16 ILE 17 ALA 18 SER 19 LEU 20 ASN 21 CYS 22 THR 23 TYR 24 SER 25 ASP 26 ARG 27 GLY 28 SER 29 THR 30 SER 31 PHE 32 PHE 33 TRP 34 TYR 35 ARG 36 GLN 37 TYR 38 SER 39 GLY 40 LYS 41 SER 42 PRO 43 GLU 44 LEU 45 ILE 46 MET 47 SER 48 ILE 49 TYR 50 SER 51 ASN 52 GLY 53 ASP 54 LYS 55 GLU 56 ASP 57 GLY 58 ARG 59 PHE 60 THR 61 ALA 62 GLN 63 LEU 64 ASN 65 LYS 66 ALA 67 SER 68 GLN 69 TYR 70 VAL 71 SER 72 LEU 73 LEU 74 ILE 75 ARG 76 ASP 77 SER 78 GLN 79 PRO 80 SER 81 ASP 82 SER 83 ALA 84 THR 85 TYR 86 LEU 87 CYS 88 ALA 89 VAL 90 THR 91 LYS 92 TYR 93 SER 94 TRP 95 GLY 96 LYS 97 LEU 98 GLN 99 PHE 100 GLY 101 ALA 102 GLY 103 THR 104 GLN 105 VAL 106 VAL 107 VAL 108 THR 109 PRO 110 ASP 111
Unit 5	ALA 2 GLY 3 VAL 4 THR 5 GLN 6 THR 7 PRO 8 LYS 9 PHE 10 GLN 11 VAL 12 LEU 13 LYS 14 THR 15 GLY 16 GLN 17 SER 18 MET 19 THR 20 LEU 21 GLN 22 CYS 23 ALA 24 GLN 25 ASP 26 MET 27 ASN 28 HIS 29 GLU 30 TYR 31 MET 32 ALA 33 TRP 34 TYR 35 ARG 36 GLN 37 ASP 38 PRO 39 GLY 40 MET 41 GLY 42 LEU 43 ARG 44 LEU 45 ILE 46 HIS 47 TYR 48 SER 49 VAL 50 GLY 51 VAL 52 GLY 53 ILE 54 THR 55 ASP 56 GLN 57 GLY 58 ASP 59 VAL 60 PRO 61 ASP 62 GLY 63 TYR 64 LYS 65 VAL 66 SER 67 ARG 68 SER 69 THR 70 THR 71 GLU 72 ASP 73 PHE 74 PRO 75 LEU 76 ARG 77 LEU 78 LEU 79 SER 80 ALA 81 ALA 82 PRO 83 SER 84 GLN 85 THR 86 SER 87 VAL 88 TYR 89 PHE 90 CYS 91 ALA 92 SER 93 ARG 94 PRO 95 GLY 96 TRP 97 MET 98 ALA 99 GLY 100 GLY 101 VAL 102 GLU 103 LEU 104 TYR 105 PHE 106 GLY 107 PRO 108 GLY 109 THR 110 ARG 111 LEU 112 THR 113 VAL 114 THR 115 GLU 116
Unit 6	GLY 1 SER 2 HIS 3 SER 4 MET 5 ARG 6 TYR 7 PHE 8 PHE 9 THR 10 SER 11 VAL 12 SER 13 ARG 14 PRO 15 GLY 16 ARG 17 GLY 18 GLU 19 PRO 20 ARG 21 PHE 22 ILE 23 ALA 24 VAL 25 GLY 26 TYR 27 VAL 28 ASP 29 ASP 30 THR 31 GLN 32 PHE 33 VAL 34 ARG 35 PHE 36 ASP 37 SER 38 ASP 39 ALA 40 ALA 41 SER 42 GLN 43 ARG 44 MET 45 GLU 46 PRO 47 ARG 48 ALA 49 PRO 50 TRP 51 ILE 52 GLU 53 GLN 54 GLU 55 GLY 56 PRO 57 GLU 58 TYR 59 TRP 60 ASP 61 GLY 62 GLU 63 THR 64 ARG 65 LYS 66 VAL 67 LYS 68 ALA 69 HIS 70 SER 71 GLN 72 THR 73 HIS 74 ARG 75 VAL 76 ASP 77 LEU 78 GLY 79 THR 80 LEU 81 ARG 82 GLY 83 TYR 84 TYR 85 ASN 86 GLN 87 SER 88 GLU 89 ALA 90 GLY 91 SER 92 HIS 93 THR 94 VAL 95 GLN 96 ARG 97 MET 98 TYR 99 GLY 100 CYS 101 ASP 102 VAL 103 GLY 104 SER 105 ASP 106 TRP 107 ARG 108 PHE 109 LEU 110 ARG 111 GLY 112 TYR 113 HIS 114 GLN 115 TYR 116 ALA 117 TYR 118 ASP 119 GLY 120 LYS 121 ASP 122 TYR 123 ILE 124 ALA 125 LEU 126 LYS 127 GLU 128 ASP 129 LEU 130 ARG 131 SER 132 TRP 133 THR 134 ALA 135 ALA 136 ASP 137 MET 138 ALA 139 ALA 140 GLN 141 THR 142 THR 143 LYS 144 HIS 145 LYS 146 TRP 147 GLU 148 ALA 149 ALA 150 HIS 151 VAL 152 ALA 153 GLU 154 GLN 155 LEU 156 ARG 157 ALA 158 TYR 159 LEU 160 GLU 161 GLY 162 THR 163 CYS 164 VAL 165 GLU 166 TRP 167 LEU 168 ARG 169 ARG 170 TYR 171 LEU 172 GLU 173 ASN 174 GLY 175 LYS 176 GLU 177 THR 178 LEU 179 GLN 180 ARG 181 THR 182 ASP 183 ALA 184 PRO 185 LYS 186 THR 187 HIS 188 MET 189 THR 190 HIS 191 HIS 192 ALA 193 VAL 194 SER 195 GLU 198 ALA 199 THR 200 LEU 201 ARG 202 CYS 203 TRP 204 ALA 205 LEU 206 SER 207 PHE 208 TYR 209 PRO 210 ALA 211 GLU 212 ILE 213 THR 214 LEU 215 THR 216 TRP 217 GLN 218 ARG 219 ASP 220 GLY 221 GLU 222 ASP 223 GLN 224 THR 225 GLN 226 ASP 227 THR 228 GLU 229 LEU 230 VAL 231 GLU 232 THR 233 ARG 234 PRO 235 ALA 236 GLY 237 ASP 238 GLY 239 THR 240 PHE 241 GLN 242 LYS 243 TRP 244 ALA 245 ALA 246 VAL 247 VAL 248 VAL 249 PRO 250 SER 251 GLY 252 GLN 253 GLU 254 GLN 255 ARG 256 TYR 257 THR 258 CYS 259 HIS 260 VAL 261 GLN 262 HIS 263 GLU 264 GLY 265 LEU 266 PRO 267 LYS 268 PRO 269 LEU 270 THR 271 LEU 272 ARG 273 TRP 274
Unit 7	GLN 2 ARG 3 THR 4 PRO 5 LYS 6 ILE 7 GLN 8 VAL 9 TYR 10 SER 11 ARG 12 HIS 13 PRO 14 ALA 15 GLU 16 ASN 17 GLY 18 LYS 19 SER 20 ASN 21 PHE 22 LEU 23 ASN 24 CYS 25 TYR 26 VAL 27 SER 28 GLY 29 PHE 30 HIS 31 PRO 32 SER 33 ASP 34 ILE 35 GLU 36 VAL 37 ASP 38 LEU 39 LEU 40 LYS 41 ASN 42 GLY 43 GLU 44 ARG 45 ILE 46 GLU 47 LYS 48 VAL 49 GLU 50 HIS 51 SER 52 ASP 53 LEU 54 SER 55 PHE 56 SER 57 LYS 58 ASP 59 TRP 60 SER 61 PHE 62 TYR 63 LEU 64 LEU 65 TYR 66 TYR 67 THR 68 GLU 69 PHE 70 THR 71 PRO 72 THR 73 GLU 74 LYS 75 ASP 76 GLU 77 TYR 78 ALA 79 CYS 80 ARG 81 VAL 82 ASN 83 HIS 84 VAL 85 THR 86 LEU 87 SER 88 GLN 89 PRO 90 LYS 91 ILE 92 VAL 93 LYS 94 TRP 95 ASP 96 ARG 97 ASP 98 MET 99
Unit 8	GLU 1 LEU 2 ALA 3 GLY 4 ILE 5 GLY 6 ILE 7 LEU 8 THR 9 VAL 10
Unit 9	GLU 2 VAL 3 GLU 4 GLN 5 ASN 6 SER 7 GLY 8 PRO 9 LEU 10 SER 11 VAL 12 PRO 13 GLU 14 GLY 15 ALA 16 ILE 17 ALA 18 SER 19 LEU 20 ASN 21 CYS 22 THR 23 TYR 24 SER 25 ASP 26 ARG 27 GLY 28 SER 29 THR 30 SER 31 PHE 32 PHE 33 TRP 34 TYR 35 ARG 36 GLN 37 TYR 38 SER 39 GLY 40 LYS 41 SER 42 PRO 43 GLU 44 LEU 45 ILE 46 MET 47 SER 48 ILE 49 TYR 50 SER 51 ASN 52 GLY 53 ASP 54 LYS 55 GLU 56 ASP 57 GLY 58 ARG 59 PHE 60 THR 61 ALA 62 GLN 63 LEU 64 ASN 65 LYS 66 ALA 67 SER 68 GLN 69 TYR 70 VAL 71 SER 72 LEU 73 LEU 74 ILE 75 ARG 76 ASP 77 SER 78 GLN 79 PRO 80 SER 81 ASP 82 SER 83 ALA 84 THR 85 TYR 86 LEU 87 CYS 88 ALA 89 VAL 90 THR 91 LYS 92 TYR 93 SER 94 TRP 95 GLY 96 LYS 97 LEU 98 GLN 99 PHE 100 GLY 101 ALA 102 GLY 103 THR 104 GLN 105 VAL 106 VAL 107 VAL 108 THR 109
Unit 10	ALA 2 GLY 3 VAL 4 THR 5 GLN 6 THR 7 PRO 8 LYS 9 PHE 10 GLN 11 VAL 12 LEU 13 LYS 14 THR 15 GLY 16 GLN 17 SER 18 MET 19 THR 20 LEU 21 GLN 22 CYS 23 ALA 24 GLN 25 ASP 26 MET 27 ASN 28 HIS 29 GLU 30 TYR 31 MET 32 ALA 33 TRP 34 TYR 35 ARG 36 GLN 37 ASP 38 PRO 39 GLY 40 MET 41 GLY 42 LEU 43 ARG 44 LEU 45 ILE 46 HIS 47 TYR 48 SER 49 VAL 50 GLY 51 VAL 52 GLY 53 ILE 54 THR 55 ASP 56 GLN 57 GLY 58 ASP 59 VAL 60 PRO 61 ASP 62 GLY 63 TYR 64 LYS 65 VAL 66 SER 67 ARG 68 SER 69 THR 70 THR 71 GLU 72 ASP 73 PHE 74 PRO 75 LEU 76 ARG 77 LEU 78 LEU 79 SER 80 ALA 81 ALA 82 PRO 83 SER 84 GLN 85 THR 86 SER 87 VAL 88 TYR 89 PHE 90 CYS 91 ALA 92 SER 93 ARG 94 PRO 95 GLY 96 TRP 97 MET 98 ALA 99 GLY 100 GLY 101 VAL 102 GLU 103 LEU 104 TYR 105 PHE 106 GLY 107 PRO 108 GLY 109 THR 110 ARG 111 LEU 112 THR 113 VAL 114 THR 115