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Sequence, Chains, Asymmetric and Biological Units

Title THE STRUCTURE OF THE TEIPP ASSOCIATED TRH4 PEPTIDE IN COMPLE 2D(B)
Keywords CANCER, NEO-EPITOPE, TAP-DEFICIENCY, TEIPP, MHC-I, SULFUR-PI INTERACTIONS, NON-CLASSICAL PEPTIDE BINDING, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5E8N     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 272 2227 0
2  Protein   BETA-2-MICROGLOBULIN  B 99 817 0
3  Protein   CERAMIDE SYNTHASE 5  C 9 69 0
4  Protein    D 272 2229 0
5  Protein   BETA-2-MICROGLOBULIN  E 99 813 0
6  Protein   CERAMIDE SYNTHASE 5  F 9 69 0
7  Protein    G 269 2200 0
8  Protein   BETA-2-MICROGLOBULIN  H 99 817 0
9  Protein   CERAMIDE SYNTHASE 5  I 9 69 0
10  Protein    J 258 2113 0
11  Protein   BETA-2-MICROGLOBULIN  K 99 809 0
12  Protein   CERAMIDE SYNTHASE 5  L 9 69 0
13  Ligand   BETA-2-MICROGLOBULIN  B 1 0 6
14  Ligand    G 1 0 5
15 Water     134 0 135
total       1639 12301 146
Proteins
Unit 1 GLY1 PRO2 HIS3 SER4 MET5 ARG6 TYR7 PHE8 GLU9 THR10 ALA11 VAL12 SER13 ARG14 PRO15 GLY16 LEU17 GLU18 GLU19 PRO20 ARG21 TYR22 ILE23 SER24 VAL25 GLY26 TYR27 VAL28 ASP29 ASN30 LYS31 GLU32 PHE33 VAL34 ARG35 PHE36 ASP37 SER38 ASP39 ALA40 GLU41 ASN42 PRO43 ARG44 TYR45 GLU46 PRO47 ARG48 ALA49 PRO50 TRP51 MET52 GLU53 GLN54 GLU55 GLY56 PRO57 GLU58 TYR59 TRP60 GLU61 ARG62 GLU63 THR64 GLN65 LYS66 ALA67 LYS68 GLY69 GLN70 GLU71 GLN72 TRP73 PHE74 ARG75 VAL76 SER77 LEU78 ARG79 ASN80 LEU81 LEU82 GLY83 TYR84 TYR85 ASN86 GLN87 SER88 ALA89 GLY90 GLY91 SER92 HIS93 THR94 LEU95 GLN96 GLN97 MET98 SER99 GLY100 CYS101 ASP102 LEU103 GLY104 SER105 ASP106 TRP107 ARG108 LEU109 LEU110 ARG111 GLY112 TYR113 LEU114 GLN115 PHE116 ALA117 TYR118 GLU119 GLY120 ARG121 ASP122 TYR123 ILE124 ALA125 LEU126 ASN127 GLU128 ASP129 LEU130 LYS131 THR132 TRP133 THR134 ALA135 ALA136 ASP137 MET138 ALA139 ALA140 GLN141 ILE142 THR143 ARG144 ARG145 LYS146 TRP147 GLU148 GLN149 SER150 GLY151 ALA152 ALA153 GLU154 HIS155 TYR156 LYS157 ALA158 TYR159 LEU160 GLU161 GLY162 GLU163 CYS164 VAL165 GLU166 TRP167 LEU168 HIS169 ARG170 TYR171 LEU172 LYS173 ASN174 GLY175 LEU180 ARG181 THR182 ASP183 SER184 PRO185 LYS186 ALA187 HIS188 VAL189 THR190 HIS191 HIS192 PRO193 ARG194 SER195 LYS196 GLY197 GLU198 VAL199 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 GLY207 PHE208 TYR209 PRO210 ALA211 ASP212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 LEU219 ASN220 GLY221 GLU222 GLU223 LEU224 THR225 GLN226 ASP227 MET228 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 SER246 VAL247 VAL248 VAL249 PRO250 LEU251 GLY252 LYS253 GLU254 GLN255 ASN256 TYR257 THR258 CYS259 ARG260 VAL261 TYR262 HIS263 GLU264 GLY265 LEU266 PRO267 GLU268 PRO269 LEU270 THR271 LEU272 ARG273 TRP274 GLU275 PRO276
Unit 2 ILE1 GLN2 LYS3 THR4 PRO5 GLN6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 PRO15 GLU16 ASN17 GLY18 LYS19 PRO20 ASN21 ILE22 LEU23 ASN24 CYS25 TYR26 VAL27 THR28 GLN29 PHE30 HIS31 PRO32 PRO33 HIS34 ILE35 GLU36 ILE37 GLN38 MET39 LEU40 LYS41 ASN42 GLY43 LYS44 LYS45 ILE46 PRO47 LYS48 VAL49 GLU50 MET51 SER52 ASP53 MET54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 ILE64 LEU65 ALA66 HIS67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 THR75 ASP76 THR77 TYR78 ALA79 CYS80 ARG81 VAL82 LYS83 HIS84 ASP85 SER86 MET87 ALA88 GLU89 PRO90 LYS91 THR92 VAL93 TYR94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 3 MET1 CYS2 LEU3 ARG4 MET5 THR6 ALA7 VAL8 MET9
Unit 4 GLY1 PRO2 HIS3 SER4 MET5 ARG6 TYR7 PHE8 GLU9 THR10 ALA11 VAL12 SER13 ARG14 PRO15 GLY16 LEU17 GLU18 GLU19 PRO20 ARG21 TYR22 ILE23 SER24 VAL25 GLY26 TYR27 VAL28 ASP29 ASN30 LYS31 GLU32 PHE33 VAL34 ARG35 PHE36 ASP37 SER38 ASP39 ALA40 GLU41 ASN42 PRO43 ARG44 TYR45 GLU46 PRO47 ARG48 ALA49 PRO50 TRP51 MET52 GLU53 GLN54 GLU55 GLY56 PRO57 GLU58 TYR59 TRP60 GLU61 ARG62 GLU63 THR64 GLN65 LYS66 ALA67 LYS68 GLY69 GLN70 GLU71 GLN72 TRP73 PHE74 ARG75 VAL76 SER77 LEU78 ARG79 ASN80 LEU81 LEU82 GLY83 TYR84 TYR85 ASN86 GLN87 SER88 ALA89 GLY90 GLY91 SER92 HIS93 THR94 LEU95 GLN96 GLN97 MET98 SER99 GLY100 CYS101 ASP102 LEU103 GLY104 SER105 ASP106 TRP107 ARG108 LEU109 LEU110 ARG111 GLY112 TYR113 LEU114 GLN115 PHE116 ALA117 TYR118 GLU119 GLY120 ARG121 ASP122 TYR123 ILE124 ALA125 LEU126 ASN127 GLU128 ASP129 LEU130 LYS131 THR132 TRP133 THR134 ALA135 ALA136 ASP137 MET138 ALA139 ALA140 GLN141 ILE142 THR143 ARG144 ARG145 LYS146 TRP147 GLU148 GLN149 SER150 GLY151 ALA152 ALA153 GLU154 HIS155 TYR156 LYS157 ALA158 TYR159 LEU160 GLU161 GLY162 GLU163 CYS164 VAL165 GLU166 TRP167 LEU168 HIS169 ARG170 TYR171 LEU172 LYS173 ASN174 GLY175 ASN176 ARG181 THR182 ASP183 SER184 PRO185 LYS186 ALA187 HIS188 VAL189 THR190 HIS191 HIS192 PRO193 ARG194 SER195 LYS196 GLY197 GLU198 VAL199 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 GLY207 PHE208 TYR209 PRO210 ALA211 ASP212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 LEU219 ASN220 GLY221 GLU222 GLU223 LEU224 THR225 GLN226 ASP227 MET228 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 SER246 VAL247 VAL248 VAL249 PRO250 LEU251 GLY252 LYS253 GLU254 GLN255 ASN256 TYR257 THR258 CYS259 ARG260 VAL261 TYR262 HIS263 GLU264 GLY265 LEU266 PRO267 GLU268 PRO269 LEU270 THR271 LEU272 ARG273 TRP274 GLU275 PRO276
Unit 5 ILE1 GLN2 LYS3 THR4 PRO5 GLN6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 PRO15 GLU16 ASN17 GLY18 LYS19 PRO20 ASN21 ILE22 LEU23 ASN24 CYS25 TYR26 VAL27 THR28 GLN29 PHE30 HIS31 PRO32 PRO33 HIS34 ILE35 GLU36 ILE37 GLN38 MET39 LEU40 LYS41 ASN42 GLY43 LYS44 LYS45 ILE46 PRO47 LYS48 VAL49 GLU50 MET51 SER52 ASP53 MET54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 ILE64 LEU65 ALA66 HIS67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 THR75 ASP76 THR77 TYR78 ALA79 CYS80 ARG81 VAL82 LYS83 HIS84 ASP85 SER86 MET87 ALA88 GLU89 PRO90 LYS91 THR92 VAL93 TYR94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 6 MET1 CYS2 LEU3 ARG4 MET5 THR6 ALA7 VAL8 MET9
Unit 7 GLY1 PRO2 HIS3 SER4 MET5 ARG6 TYR7 PHE8 GLU9 THR10 ALA11 VAL12 SER13 ARG14 PRO15 GLY16 LEU17 GLU18 GLU19 PRO20 ARG21 TYR22 ILE23 SER24 VAL25 GLY26 TYR27 VAL28 ASP29 ASN30 LYS31 GLU32 PHE33 VAL34 ARG35 PHE36 ASP37 SER38 ASP39 ALA40 GLU41 ASN42 PRO43 ARG44 TYR45 GLU46 PRO47 ARG48 ALA49 PRO50 TRP51 MET52 GLU53 GLN54 GLU55 GLY56 PRO57 GLU58 TYR59 TRP60 GLU61 ARG62 GLU63 THR64 GLN65 LYS66 ALA67 LYS68 GLY69 GLN70 GLU71 GLN72 TRP73 PHE74 ARG75 VAL76 SER77 LEU78 ARG79 ASN80 LEU81 LEU82 GLY83 TYR84 TYR85 ASN86 GLN87 SER88 ALA89 GLY90 GLY91 SER92 HIS93 THR94 LEU95 GLN96 GLN97 MET98 SER99 GLY100 CYS101 ASP102 LEU103 GLY104 SER105 ASP106 TRP107 ARG108 LEU109 LEU110 ARG111 GLY112 TYR113 LEU114 GLN115 PHE116 ALA117 TYR118 GLU119 GLY120 ARG121 ASP122 TYR123 ILE124 ALA125 LEU126 ASN127 GLU128 ASP129 LEU130 LYS131 THR132 TRP133 THR134 ALA135 ALA136 ASP137 MET138 ALA139 ALA140 GLN141 ILE142 THR143 ARG144 ARG145 LYS146 TRP147 GLU148 GLN149 SER150 GLY151 ALA152 ALA153 GLU154 HIS155 TYR156 LYS157 ALA158 TYR159 LEU160 GLU161 GLY162 GLU163 CYS164 VAL165 GLU166 TRP167 LEU168 HIS169 ARG170 TYR171 LEU172 LYS173 ASN174 GLY175 ARG181 THR182 ASP183 SER184 PRO185 LYS186 ALA187 HIS188 VAL189 THR190 HIS191 HIS192 PRO193 ARG194 GLY197 GLU198 VAL199 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 GLY207 PHE208 TYR209 PRO210 ALA211 ASP212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 LEU219 ASN220 GLY221 GLU222 GLU223 LEU224 THR225 GLN226 ASP227 MET228 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 SER246 VAL247 VAL248 VAL249 PRO250 LEU251 GLY252 LYS253 GLU254 GLN255 ASN256 TYR257 THR258 CYS259 ARG260 VAL261 TYR262 HIS263 GLU264 GLY265 LEU266 PRO267 GLU268 PRO269 LEU270 THR271 LEU272 ARG273 TRP274 GLU275 PRO276
Unit 8 ILE1 GLN2 LYS3 THR4 PRO5 GLN6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 PRO15 GLU16 ASN17 GLY18 LYS19 PRO20 ASN21 ILE22 LEU23 ASN24 CYS25 TYR26 VAL27 THR28 GLN29 PHE30 HIS31 PRO32 PRO33 HIS34 ILE35 GLU36 ILE37 GLN38 MET39 LEU40 LYS41 ASN42 GLY43 LYS44 LYS45 ILE46 PRO47 LYS48 VAL49 GLU50 MET51 SER52 ASP53 MET54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 ILE64 LEU65 ALA66 HIS67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 THR75 ASP76 THR77 TYR78 ALA79 CYS80 ARG81 VAL82 LYS83 HIS84 ASP85 SER86 MET87 ALA88 GLU89 PRO90 LYS91 THR92 VAL93 TYR94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 9 MET1 CYS2 LEU3 ARG4 MET5 THR6 ALA7 VAL8 MET9
Unit 10 GLY1 PRO2 HIS3 SER4 MET5 ARG6 TYR7 PHE8 GLU9 THR10 ALA11 VAL12 SER13 ARG14 PRO15 GLY16 LEU17 GLU18 GLU19 PRO20 ARG21 TYR22 ILE23 SER24 VAL25 GLY26 TYR27 VAL28 ASP29 ASN30 LYS31 GLU32 PHE33 VAL34 ARG35 PHE36 ASP37 SER38 ASP39 ALA40 GLU41 ASN42 PRO43 ARG44 TYR45 GLU46 PRO47 ARG48 ALA49 PRO50 TRP51 MET52 GLU53 GLN54 GLU55 GLY56 PRO57 GLU58 TYR59 TRP60 GLU61 ARG62 GLU63 THR64 GLN65 LYS66 ALA67 LYS68 GLY69 GLN70 GLU71 GLN72 TRP73 PHE74 ARG75 VAL76 SER77 LEU78 ARG79 ASN80 LEU81 LEU82 GLY83 TYR84 TYR85 ASN86 GLN87 SER88 ALA89 GLY90 GLY91 SER92 HIS93 THR94 LEU95 GLN96 GLN97 MET98 SER99 GLY100 CYS101 ASP102 LEU103 GLY104 SER105 ASP106 TRP107 ARG108 LEU109 LEU110 ARG111 GLY112 TYR113 LEU114 GLN115 PHE116 ALA117 TYR118 GLU119 GLY120 ARG121 ASP122 TYR123 ILE124 ALA125 LEU126 ASN127 GLU128 ASP129 LEU130 LYS131 THR132 TRP133 THR134 ALA135 ALA136 ASP137 MET138 ALA139 ALA140 GLN141 ILE142 THR143 ARG144 ARG145 LYS146 TRP147 GLU148 GLN149 SER150 GLY151 ALA152 ALA153 GLU154 HIS155 TYR156 LYS157 ALA158 TYR159 LEU160 GLU161 GLY162 GLU163 CYS164 VAL165 GLU166 TRP167 LEU168 HIS169 ARG170 TYR171 LEU172 LYS173 ASN174 GLY175 ARG181 THR182 ASP183 SER184 PRO185 LYS186 ALA187 HIS188 VAL189 THR190 HIS191 HIS192 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 GLY207 PHE208 TYR209 PRO210 ALA211 ASP212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 LEU219 ASN220 GLU222 GLU223 LEU224 THR225 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 SER246 VAL247 PRO250 LEU251 GLY252 LYS253 GLU254 GLN255 ASN256 TYR257 THR258 CYS259 ARG260 VAL261 TYR262 HIS263 GLU264 GLY265 LEU266 PRO267 GLU268 PRO269 LEU270 THR271 LEU272 ARG273 TRP274 GLU275 PRO276
Unit 11 ILE1 GLN2 LYS3 THR4 PRO5 GLN6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 PRO15 GLU16 ASN17 GLY18 LYS19 PRO20 ASN21 ILE22 LEU23 ASN24 CYS25 TYR26 VAL27 THR28 GLN29 PHE30 HIS31 PRO32 PRO33 HIS34 ILE35 GLU36 ILE37 GLN38 MET39 LEU40 LYS41 ASN42 GLY43 LYS44 LYS45 ILE46 PRO47 LYS48 VAL49 GLU50 MET51 SER52 ASP53 MET54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 ILE64 LEU65 ALA66 HIS67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 THR75 ASP76 THR77 TYR78 ALA79 CYS80 ARG81 VAL82 LYS83 HIS84 ASP85 SER86 MET87 ALA88 GLU89 PRO90 LYS91 THR92 VAL93 TYR94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 12 MET1 CYS2 LEU3 ARG4 MET5 THR6 ALA7 VAL8 MET9
Ligands
Unit 13 GOL101
Unit 14 SO4301
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany