5E6J - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF SARS PLPRO BOUND TO A LYS48-LINKED DI-UBIQUITIN BASED PROBE
• Keywords: SARS PLPRO, DEUBIQUITINATING ENZYME, UBIQUITIN, ACTIVITY BAS K48-LINKAGE, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5E6J	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	REPLICASE POLYPROTEIN 1AB	A	317	2478	0
2	Protein	UBIQUITIN	B	76	588	18
3	Protein	POLYUBIQUITIN-B	C	75	585	0
4	Protein	REPLICASE POLYPROTEIN 1AB	D	313	2449	0
5	Protein	UBIQUITIN	E	76	588	18
6	Protein	POLYUBIQUITIN-B	F	75	582	0
7	Ligand	REPLICASE POLYPROTEIN 1AB	A	2	0	5
8	Water			55	0	55
total				989	7270	96

Proteins

Unit 1	LYS 4 THR 5 ILE 6 LYS 7 VAL 8 PHE 9 THR 10 THR 11 VAL 12 ASP 13 ASN 14 THR 15 ASN 16 LEU 17 HIS 18 THR 19 GLN 20 LEU 21 VAL 22 ASP 23 MET 24 SER 25 MET 26 THR 27 TYR 28 GLY 29 GLN 30 GLN 31 PHE 32 GLY 33 PRO 34 THR 35 TYR 36 LEU 37 ASP 38 GLY 39 ALA 40 ASP 41 VAL 42 THR 43 LYS 44 ILE 45 LYS 46 PRO 47 HIS 48 VAL 49 ASN 50 HIS 51 GLU 52 GLY 53 LYS 54 THR 55 PHE 56 PHE 57 VAL 58 LEU 59 PRO 60 SER 61 ASP 62 ASP 63 THR 64 LEU 65 ARG 66 SER 67 GLU 68 ALA 69 PHE 70 GLU 71 TYR 72 TYR 73 HIS 74 THR 75 LEU 76 ASP 77 GLU 78 SER 79 PHE 80 LEU 81 GLY 82 ARG 83 TYR 84 MET 85 SER 86 ALA 87 LEU 88 ASN 89 HIS 90 THR 91 LYS 92 LYS 93 TRP 94 LYS 95 PHE 96 PRO 97 GLN 98 VAL 99 GLY 100 GLY 101 LEU 102 THR 103 SER 104 ILE 105 LYS 106 TRP 107 ALA 108 ASP 109 ASN 110 ASN 111 CYS 112 TYR 113 LEU 114 SER 115 SER 116 VAL 117 LEU 118 LEU 119 ALA 120 LEU 121 GLN 122 GLN 123 LEU 124 GLU 125 VAL 126 LYS 127 PHE 128 ASN 129 ALA 130 PRO 131 ALA 132 LEU 133 GLN 134 GLU 135 ALA 136 TYR 137 TYR 138 ARG 139 ALA 140 ARG 141 ALA 142 GLY 143 ASP 144 ALA 145 ALA 146 ASN 147 PHE 148 CYS 149 ALA 150 LEU 151 ILE 152 LEU 153 ALA 154 TYR 155 SER 156 ASN 157 LYS 158 THR 159 VAL 160 GLY 161 GLU 162 LEU 163 GLY 164 ASP 165 VAL 166 ARG 167 GLU 168 THR 169 MET 170 THR 171 HIS 172 LEU 173 LEU 174 GLN 175 HIS 176 ALA 177 ASN 178 LEU 179 GLU 180 SER 181 ALA 182 LYS 183 ARG 184 VAL 185 LEU 186 ASN 187 VAL 188 VAL 189 CYS 190 LYS 191 HIS 192 CYS 193 GLY 194 GLN 195 LYS 196 THR 197 THR 198 THR 199 LEU 200 THR 201 GLY 202 VAL 203 GLU 204 ALA 205 VAL 206 MET 207 TYR 208 MET 209 GLY 210 THR 211 LEU 212 SER 213 TYR 214 ASP 215 ASN 216 LEU 217 LYS 218 THR 219 GLY 220 VAL 221 SER 222 ILE 223 PRO 224 CYS 225 VAL 226 CYS 227 GLY 228 ARG 229 ASP 230 ALA 231 THR 232 GLN 233 TYR 234 LEU 235 VAL 236 GLN 237 GLN 238 GLU 239 SER 240 SER 241 PHE 242 VAL 243 MET 244 MET 245 SER 246 ALA 247 PRO 248 PRO 249 ALA 250 GLU 251 TYR 252 LYS 253 LEU 254 GLN 255 GLN 256 GLY 257 THR 258 PHE 259 LEU 260 CYS 261 ALA 262 ASN 263 GLU 264 TYR 265 THR 266 GLY 267 ASN 268 TYR 269 GLN 270 CYS 271 GLY 272 HIS 273 TYR 274 THR 275 HIS 276 ILE 277 THR 278 ALA 279 LYS 280 GLU 281 THR 282 LEU 283 TYR 284 ARG 285 ILE 286 ASP 287 GLY 288 ALA 289 HIS 290 LEU 291 THR 292 LYS 293 MET 294 SER 295 GLU 296 TYR 297 LYS 298 GLY 299 PRO 300 VAL 301 THR 302 ASP 303 VAL 304 PHE 305 TYR 306 LYS 307 GLU 308 THR 309 SER 310 TYR 311 THR 312 THR 313 THR 314 ILE 315 LYS 316 PRO 317 LEU 318 GLU 319 HIS 320
Unit 2	MET 1 GLN 2 ILE 3 PHE 4 VAL 5 LYS 6 THR 7 LEU 8 THR 9 GLY 10 LYS 11 THR 12 ILE 13 THR 14 LEU 15 GLU 16 VAL 17 GLU 18 PRO 19 SER 20 ASP 21 THR 22 ILE 23 GLU 24 ASN 25 VAL 26 LYS 27 ALA 28 LYS 29 ILE 30 GLN 31 ASP 32 LYS 33 GLU 34 GLY 35 ILE 36 PRO 37 PRO 38 ASP 39 GLN 40 GLN 41 ARG 42 LEU 43 ILE 44 PHE 45 ALA 46 GLY 47 5MW 48 GLN 49 LEU 50 GLU 51 ASP 52 GLY 53 ARG 54 THR 55 LEU 56 SER 57 ASP 58 TYR 59 ASN 60 ILE 61 GLN 62 LYS 63 GLU 64 SER 65 THR 66 LEU 67 HIS 68 LEU 69 VAL 70 LEU 71 ARG 72 LEU 73 ARG 74 GLY 75 AYE 76
Unit 3	MET 1 GLN 2 ILE 3 PHE 4 VAL 5 LYS 6 THR 7 LEU 8 THR 9 GLY 10 LYS 11 THR 12 ILE 13 THR 14 LEU 15 GLU 16 VAL 17 GLU 18 PRO 19 SER 20 ASP 21 THR 22 ILE 23 GLU 24 ASN 25 VAL 26 LYS 27 ALA 28 LYS 29 ILE 30 GLN 31 ASP 32 LYS 33 GLU 34 GLY 35 ILE 36 PRO 37 PRO 38 ASP 39 GLN 40 GLN 41 ARG 42 LEU 43 ILE 44 PHE 45 ALA 46 GLY 47 LYS 48 GLN 49 LEU 50 GLU 51 ASP 52 GLY 53 ARG 54 THR 55 LEU 56 SER 57 ASP 58 TYR 59 ASN 60 ILE 61 GLN 62 LYS 63 GLU 64 SER 65 THR 66 LEU 67 HIS 68 LEU 69 VAL 70 LEU 71 ARG 72 LEU 73 ARG 74 GLY 75
Unit 4	LYS 4 THR 5 ILE 6 LYS 7 VAL 8 PHE 9 THR 10 THR 11 VAL 12 ASP 13 ASN 14 THR 15 ASN 16 LEU 17 HIS 18 THR 19 GLN 20 LEU 21 VAL 22 ASP 23 MET 24 SER 25 MET 26 THR 27 TYR 28 GLY 29 GLN 30 GLN 31 PHE 32 GLY 33 PRO 34 THR 35 TYR 36 LEU 37 ASP 38 GLY 39 ALA 40 ASP 41 VAL 42 THR 43 LYS 44 ILE 45 LYS 46 PRO 47 HIS 48 VAL 49 ASN 50 HIS 51 GLU 52 GLY 53 LYS 54 THR 55 PHE 56 PHE 57 VAL 58 LEU 59 PRO 60 SER 61 ASP 62 ASP 63 THR 64 LEU 65 ARG 66 SER 67 GLU 68 ALA 69 PHE 70 GLU 71 TYR 72 TYR 73 HIS 74 THR 75 LEU 76 ASP 77 GLU 78 SER 79 PHE 80 LEU 81 GLY 82 ARG 83 TYR 84 MET 85 SER 86 ALA 87 LEU 88 ASN 89 HIS 90 THR 91 LYS 92 LYS 93 TRP 94 LYS 95 PHE 96 PRO 97 GLN 98 VAL 99 GLY 100 GLY 101 LEU 102 THR 103 SER 104 ILE 105 LYS 106 TRP 107 ALA 108 ASP 109 ASN 110 ASN 111 CYS 112 TYR 113 LEU 114 SER 115 SER 116 VAL 117 LEU 118 LEU 119 ALA 120 LEU 121 GLN 122 GLN 123 LEU 124 GLU 125 VAL 126 LYS 127 PHE 128 ASN 129 ALA 130 PRO 131 ALA 132 LEU 133 GLN 134 GLU 135 ALA 136 TYR 137 TYR 138 ARG 139 ALA 140 ARG 141 ALA 142 GLY 143 ASP 144 ALA 145 ALA 146 ASN 147 PHE 148 CYS 149 ALA 150 LEU 151 ILE 152 LEU 153 ALA 154 TYR 155 SER 156 ASN 157 LYS 158 THR 159 VAL 160 GLY 161 GLU 162 LEU 163 GLY 164 ASP 165 VAL 166 ARG 167 GLU 168 THR 169 MET 170 THR 171 HIS 172 LEU 173 LEU 174 GLN 175 HIS 176 ALA 177 ASN 178 LEU 179 GLU 180 SER 181 ALA 182 LYS 183 ARG 184 VAL 185 LEU 186 ASN 187 VAL 188 VAL 189 CYS 190 LYS 191 HIS 192 CYS 193 GLY 194 GLN 195 LYS 196 THR 197 THR 198 THR 199 LEU 200 THR 201 GLY 202 VAL 203 GLU 204 ALA 205 VAL 206 MET 207 TYR 208 MET 209 GLY 210 THR 211 LEU 212 SER 213 TYR 214 ASP 215 ASN 216 LEU 217 LYS 218 THR 219 GLY 220 VAL 221 SER 222 ILE 223 PRO 224 CYS 225 VAL 226 CYS 227 GLY 228 ARG 229 ASP 230 ALA 231 THR 232 GLN 233 TYR 234 LEU 235 VAL 236 GLN 237 GLN 238 GLU 239 SER 240 SER 241 PHE 242 VAL 243 MET 244 MET 245 SER 246 ALA 247 PRO 248 PRO 249 ALA 250 GLU 251 TYR 252 LYS 253 LEU 254 GLN 255 GLN 256 GLY 257 THR 258 PHE 259 LEU 260 CYS 261 ALA 262 ASN 263 GLU 264 TYR 265 THR 266 GLY 267 ASN 268 TYR 269 GLN 270 CYS 271 GLY 272 HIS 273 TYR 274 THR 275 HIS 276 ILE 277 THR 278 ALA 279 LYS 280 GLU 281 THR 282 LEU 283 TYR 284 ARG 285 ILE 286 ASP 287 GLY 288 ALA 289 HIS 290 LEU 291 THR 292 LYS 293 MET 294 SER 295 GLU 296 TYR 297 LYS 298 GLY 299 PRO 300 VAL 301 THR 302 ASP 303 VAL 304 PHE 305 TYR 306 LYS 307 GLU 308 THR 309 SER 310 TYR 311 THR 312 THR 313 THR 314 ILE 315 LYS 316
Unit 5	MET 1 GLN 2 ILE 3 PHE 4 VAL 5 LYS 6 THR 7 LEU 8 THR 9 GLY 10 LYS 11 THR 12 ILE 13 THR 14 LEU 15 GLU 16 VAL 17 GLU 18 PRO 19 SER 20 ASP 21 THR 22 ILE 23 GLU 24 ASN 25 VAL 26 LYS 27 ALA 28 LYS 29 ILE 30 GLN 31 ASP 32 LYS 33 GLU 34 GLY 35 ILE 36 PRO 37 PRO 38 ASP 39 GLN 40 GLN 41 ARG 42 LEU 43 ILE 44 PHE 45 ALA 46 GLY 47 5MW 48 GLN 49 LEU 50 GLU 51 ASP 52 GLY 53 ARG 54 THR 55 LEU 56 SER 57 ASP 58 TYR 59 ASN 60 ILE 61 GLN 62 LYS 63 GLU 64 SER 65 THR 66 LEU 67 HIS 68 LEU 69 VAL 70 LEU 71 ARG 72 LEU 73 ARG 74 GLY 75 AYE 76
Unit 6	MET 1 GLN 2 ILE 3 PHE 4 VAL 5 LYS 6 THR 7 LEU 8 THR 9 GLY 10 LYS 11 THR 12 ILE 13 THR 14 LEU 15 GLU 16 VAL 17 GLU 18 PRO 19 SER 20 ASP 21 THR 22 ILE 23 GLU 24 ASN 25 VAL 26 LYS 27 ALA 28 LYS 29 ILE 30 GLN 31 ASP 32 LYS 33 GLU 34 GLY 35 ILE 36 PRO 37 PRO 38 ASP 39 GLN 40 GLN 41 ARG 42 LEU 43 ILE 44 PHE 45 ALA 46 GLY 47 LYS 48 GLN 49 LEU 50 GLU 51 ASP 52 GLY 53 ARG 54 THR 55 LEU 56 SER 57 ASP 58 TYR 59 ASN 60 ILE 61 GLN 62 LYS 63 GLU 64 SER 65 THR 66 LEU 67 HIS 68 LEU 69 VAL 70 LEU 71 ARG 72 LEU 73 ARG 74 GLY 75

Ligands

Unit 7

ACT 401 NI 402