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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF H5 HEMAGGLUTININ Q226L MUTANT FROM THE VIRUS A/DUCK/EGYPT/10185SS/2010 (H5N1) WITH LSTA
Keywords H5N1 INFLUENZA VIRUS, HEMAGGLUTININ, RECEPTOR BINDING SPECIF TRANSMISSION, GLYCAN COMPLEX, VIRAL PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5E2Z     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HEMAGGLUTININ  C 323 2558 0
2  Protein   HEMAGGLUTININ  D 175 1418 0
3  Protein   HEMAGGLUTININ  A 323 2558 0
4  Protein   HEMAGGLUTININ  B 175 1418 0
5  Protein   HEMAGGLUTININ  E 323 2558 0
6  Protein   HEMAGGLUTININ  F 175 1418 0
7  Ligand    G 3 0 38
8  Ligand    H 2 0 31
9  Ligand    I 4 0 48
10  Ligand    J 3 0 46
11  Ligand    K 3 0 38
12  Ligand    L 2 0 31
13  Ligand   HEMAGGLUTININ  C 1 0 14
14  Ligand   HEMAGGLUTININ  A 1 0 14
15  Ligand   HEMAGGLUTININ  E 1 0 14
16 Water     167 0 167
total       1681 11928 441
Proteins
Unit 1 ASP8 PRO9 GLY10 ASP11 GLN12 ILE13 CYS14 ILE15 GLY16 TYR17 HIS18 ALA19 ASN20 ASN21 SER22 THR23 GLU24 GLN25 VAL26 ASP27 THR28 ILE29 MET30 GLU31 LYS32 ASN33 VAL34 THR35 VAL36 THR37 HIS38 ALA39 GLN40 ASP41 ILE42 LEU43 GLU44 LYS45 THR46 HIS47 ASN48 GLY49 LYS50 LEU51 CYS52 ASN53 LEU54 ASP55 GLY55A VAL56 LYS57 PRO58 LEU59 ILE60 LEU61 ARG62 ASP63 CYS64 SER65 VAL66 ALA67 GLY68 TRP69 LEU70 LEU71 GLY72 ASN73 PRO74 MET75 CYS76 ASP77 GLU78 PHE79 LEU80 ASN81 VAL82 PRO83 GLU83A TRP84 SER85 TYR86 ILE87 VAL88 GLU89 LYS90 ILE91 ASN92 PRO93 ALA94 ASN95 ASP96 LEU96A CYS97 TYR98 PRO99 GLY100 ASN101 PHE102 ASN103 ASP104 TYR105 GLU106 GLU107 LEU108 LYS109 HIS110 LEU111 LEU112 SER113 ARG114 ILE115 ASN116 HIS117 PHE118 GLU119 LYS120 ILE121 GLN122 ILE123 THR124 PRO125 LYS125A ASN125B SER126 TRP127 SER128 ASP129 HIS130 GLU131 ALA132 SER133 GLY134 VAL135 SER136 SER137 ALA138 CYS139 PRO140 TYR141 GLN142 GLY143 ARG144 SER145 SER146 PHE147 PHE148 ARG149 ASN150 VAL151 VAL152 TRP153 LEU154 THR155 LYS156 LYS157 ASP158 ASN159 ALA160 TYR161 PRO162 THR163 ILE164 LYS165 ARG166 SER167 TYR168 ASN169 ASN170 THR171 ASN172 GLN173 GLU174 ASP175 LEU176 LEU177 VAL178 LEU179 TRP180 GLY181 ILE182 HIS183 HIS184 PRO185 ASN186 ASP187 ALA188 THR189 GLU190 GLN191 THR192 ARG193 LEU194 TYR195 GLN196 ASN197 PRO198 THR199 THR200 TYR201 ILE202 SER203 VAL204 GLY205 THR206 SER207 THR208 LEU209 ASN210 GLN211 LYS212 LEU213 VAL214 PRO215 LYS216 ILE217 ALA218 THR219 ARG220 SER221 LYS222 VAL223 LYS224 GLY225 LEU226 SER227 GLY228 ARG229 MET230 GLU231 PHE232 PHE233 TRP234 THR235 ILE236 LEU237 LYS238 SER239 ASN240 ASP241 ALA242 ILE243 ASN244 PHE245 GLU246 SER247 ASN248 GLY249 ASN250 PHE251 ILE252 ALA253 PRO254 GLU255 ASN256 ALA257 TYR258 LYS259 ILE260 VAL260A LYS261 LYS262 GLY263 ASP264 SER265 THR266 ILE267 MET268 LYS269 SER270 GLU271 LEU272 GLU273 TYR274 GLY275 ASP276 CYS277 ASN278 THR279 LYS280 CYS281 GLN282 THR283 PRO284 ILE285 GLY286 ALA287 ILE288 ASN289 SER290 SER291 MET292 PRO293 PHE294 HIS295 ASN296 ILE297 HIS298 PRO299 LEU300 THR301 ILE302 GLY303 GLU304 CYS305 PRO306 LYS307 TYR308 VAL309 LYS310 SER311 ASN312 ARG313 LEU314 VAL315 LEU316 ALA317 THR318 GLY319 LEU320 ARG321 ASN322 SER323 PRO324
Unit 2 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 GLY12 GLY13 TRP14 GLN15 GLY16 MET17 VAL18 ASP19 GLY20 TRP21 TYR22 GLY23 TYR24 HIS25 HIS26 SER27 ASN28 GLU29 GLN30 GLY31 SER32 GLY33 TYR34 ALA35 ALA36 ASP37 LYS38 GLU39 SER40 THR41 GLN42 LYS43 ALA44 ILE45 ASP46 GLY47 VAL48 THR49 ASN50 LYS51 VAL52 ASN53 SER54 ILE55 ILE56 ASP57 LYS58 MET59 ASN60 THR61 GLN62 PHE63 GLU64 ALA65 VAL66 GLY67 ARG68 GLU69 PHE70 ASN71 ASN72 LEU73 GLU74 ARG75 ARG76 ILE77 GLU78 ASN79 LEU80 ASN81 LYS82 LYS83 MET84 GLU85 ASP86 GLY87 PHE88 LEU89 ASP90 VAL91 TRP92 THR93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 LEU101 MET102 GLU103 ASN104 GLU105 ARG106 THR107 LEU108 ASP109 PHE110 HIS111 ASP112 SER113 ASN114 VAL115 LYS116 ASN117 LEU118 TYR119 ASP120 LYS121 VAL122 ARG123 LEU124 GLN125 LEU126 ARG127 ASP128 ASN129 ALA130 LYS131 GLU132 LEU133 GLY134 ASN135 GLY136 CYS137 PHE138 GLU139 PHE140 TYR141 HIS142 ARG143 CYS144 ASP145 ASN146 GLU147 CYS148 MET149 GLU150 SER151 VAL152 ARG153 ASN154 GLY155 THR156 TYR157 ASP158 TYR159 PRO160 GLN161 TYR162 SER163 GLU164 GLU165 ALA166 ARG167 LEU168 LYS169 ARG170 GLU171 GLU172 ILE173 SER174 GLY175
Unit 3 ASP8 PRO9 GLY10 ASP11 GLN12 ILE13 CYS14 ILE15 GLY16 TYR17 HIS18 ALA19 ASN20 ASN21 SER22 THR23 GLU24 GLN25 VAL26 ASP27 THR28 ILE29 MET30 GLU31 LYS32 ASN33 VAL34 THR35 VAL36 THR37 HIS38 ALA39 GLN40 ASP41 ILE42 LEU43 GLU44 LYS45 THR46 HIS47 ASN48 GLY49 LYS50 LEU51 CYS52 ASN53 LEU54 ASP55 GLY55A VAL56 LYS57 PRO58 LEU59 ILE60 LEU61 ARG62 ASP63 CYS64 SER65 VAL66 ALA67 GLY68 TRP69 LEU70 LEU71 GLY72 ASN73 PRO74 MET75 CYS76 ASP77 GLU78 PHE79 LEU80 ASN81 VAL82 PRO83 GLU83A TRP84 SER85 TYR86 ILE87 VAL88 GLU89 LYS90 ILE91 ASN92 PRO93 ALA94 ASN95 ASP96 LEU96A CYS97 TYR98 PRO99 GLY100 ASN101 PHE102 ASN103 ASP104 TYR105 GLU106 GLU107 LEU108 LYS109 HIS110 LEU111 LEU112 SER113 ARG114 ILE115 ASN116 HIS117 PHE118 GLU119 LYS120 ILE121 GLN122 ILE123 THR124 PRO125 LYS125A ASN125B SER126 TRP127 SER128 ASP129 HIS130 GLU131 ALA132 SER133 GLY134 VAL135 SER136 SER137 ALA138 CYS139 PRO140 TYR141 GLN142 GLY143 ARG144 SER145 SER146 PHE147 PHE148 ARG149 ASN150 VAL151 VAL152 TRP153 LEU154 THR155 LYS156 LYS157 ASP158 ASN159 ALA160 TYR161 PRO162 THR163 ILE164 LYS165 ARG166 SER167 TYR168 ASN169 ASN170 THR171 ASN172 GLN173 GLU174 ASP175 LEU176 LEU177 VAL178 LEU179 TRP180 GLY181 ILE182 HIS183 HIS184 PRO185 ASN186 ASP187 ALA188 THR189 GLU190 GLN191 THR192 ARG193 LEU194 TYR195 GLN196 ASN197 PRO198 THR199 THR200 TYR201 ILE202 SER203 VAL204 GLY205 THR206 SER207 THR208 LEU209 ASN210 GLN211 LYS212 LEU213 VAL214 PRO215 LYS216 ILE217 ALA218 THR219 ARG220 SER221 LYS222 VAL223 LYS224 GLY225 LEU226 SER227 GLY228 ARG229 MET230 GLU231 PHE232 PHE233 TRP234 THR235 ILE236 LEU237 LYS238 SER239 ASN240 ASP241 ALA242 ILE243 ASN244 PHE245 GLU246 SER247 ASN248 GLY249 ASN250 PHE251 ILE252 ALA253 PRO254 GLU255 ASN256 ALA257 TYR258 LYS259 ILE260 VAL260A LYS261 LYS262 GLY263 ASP264 SER265 THR266 ILE267 MET268 LYS269 SER270 GLU271 LEU272 GLU273 TYR274 GLY275 ASP276 CYS277 ASN278 THR279 LYS280 CYS281 GLN282 THR283 PRO284 ILE285 GLY286 ALA287 ILE288 ASN289 SER290 SER291 MET292 PRO293 PHE294 HIS295 ASN296 ILE297 HIS298 PRO299 LEU300 THR301 ILE302 GLY303 GLU304 CYS305 PRO306 LYS307 TYR308 VAL309 LYS310 SER311 ASN312 ARG313 LEU314 VAL315 LEU316 ALA317 THR318 GLY319 LEU320 ARG321 ASN322 SER323 PRO324
Unit 4 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 GLY12 GLY13 TRP14 GLN15 GLY16 MET17 VAL18 ASP19 GLY20 TRP21 TYR22 GLY23 TYR24 HIS25 HIS26 SER27 ASN28 GLU29 GLN30 GLY31 SER32 GLY33 TYR34 ALA35 ALA36 ASP37 LYS38 GLU39 SER40 THR41 GLN42 LYS43 ALA44 ILE45 ASP46 GLY47 VAL48 THR49 ASN50 LYS51 VAL52 ASN53 SER54 ILE55 ILE56 ASP57 LYS58 MET59 ASN60 THR61 GLN62 PHE63 GLU64 ALA65 VAL66 GLY67 ARG68 GLU69 PHE70 ASN71 ASN72 LEU73 GLU74 ARG75 ARG76 ILE77 GLU78 ASN79 LEU80 ASN81 LYS82 LYS83 MET84 GLU85 ASP86 GLY87 PHE88 LEU89 ASP90 VAL91 TRP92 THR93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 LEU101 MET102 GLU103 ASN104 GLU105 ARG106 THR107 LEU108 ASP109 PHE110 HIS111 ASP112 SER113 ASN114 VAL115 LYS116 ASN117 LEU118 TYR119 ASP120 LYS121 VAL122 ARG123 LEU124 GLN125 LEU126 ARG127 ASP128 ASN129 ALA130 LYS131 GLU132 LEU133 GLY134 ASN135 GLY136 CYS137 PHE138 GLU139 PHE140 TYR141 HIS142 ARG143 CYS144 ASP145 ASN146 GLU147 CYS148 MET149 GLU150 SER151 VAL152 ARG153 ASN154 GLY155 THR156 TYR157 ASP158 TYR159 PRO160 GLN161 TYR162 SER163 GLU164 GLU165 ALA166 ARG167 LEU168 LYS169 ARG170 GLU171 GLU172 ILE173 SER174 GLY175
Unit 5 ASP8 PRO9 GLY10 ASP11 GLN12 ILE13 CYS14 ILE15 GLY16 TYR17 HIS18 ALA19 ASN20 ASN21 SER22 THR23 GLU24 GLN25 VAL26 ASP27 THR28 ILE29 MET30 GLU31 LYS32 ASN33 VAL34 THR35 VAL36 THR37 HIS38 ALA39 GLN40 ASP41 ILE42 LEU43 GLU44 LYS45 THR46 HIS47 ASN48 GLY49 LYS50 LEU51 CYS52 ASN53 LEU54 ASP55 GLY55A VAL56 LYS57 PRO58 LEU59 ILE60 LEU61 ARG62 ASP63 CYS64 SER65 VAL66 ALA67 GLY68 TRP69 LEU70 LEU71 GLY72 ASN73 PRO74 MET75 CYS76 ASP77 GLU78 PHE79 LEU80 ASN81 VAL82 PRO83 GLU83A TRP84 SER85 TYR86 ILE87 VAL88 GLU89 LYS90 ILE91 ASN92 PRO93 ALA94 ASN95 ASP96 LEU96A CYS97 TYR98 PRO99 GLY100 ASN101 PHE102 ASN103 ASP104 TYR105 GLU106 GLU107 LEU108 LYS109 HIS110 LEU111 LEU112 SER113 ARG114 ILE115 ASN116 HIS117 PHE118 GLU119 LYS120 ILE121 GLN122 ILE123 THR124 PRO125 LYS125A ASN125B SER126 TRP127 SER128 ASP129 HIS130 GLU131 ALA132 SER133 GLY134 VAL135 SER136 SER137 ALA138 CYS139 PRO140 TYR141 GLN142 GLY143 ARG144 SER145 SER146 PHE147 PHE148 ARG149 ASN150 VAL151 VAL152 TRP153 LEU154 THR155 LYS156 LYS157 ASP158 ASN159 ALA160 TYR161 PRO162 THR163 ILE164 LYS165 ARG166 SER167 TYR168 ASN169 ASN170 THR171 ASN172 GLN173 GLU174 ASP175 LEU176 LEU177 VAL178 LEU179 TRP180 GLY181 ILE182 HIS183 HIS184 PRO185 ASN186 ASP187 ALA188 THR189 GLU190 GLN191 THR192 ARG193 LEU194 TYR195 GLN196 ASN197 PRO198 THR199 THR200 TYR201 ILE202 SER203 VAL204 GLY205 THR206 SER207 THR208 LEU209 ASN210 GLN211 LYS212 LEU213 VAL214 PRO215 LYS216 ILE217 ALA218 THR219 ARG220 SER221 LYS222 VAL223 LYS224 GLY225 LEU226 SER227 GLY228 ARG229 MET230 GLU231 PHE232 PHE233 TRP234 THR235 ILE236 LEU237 LYS238 SER239 ASN240 ASP241 ALA242 ILE243 ASN244 PHE245 GLU246 SER247 ASN248 GLY249 ASN250 PHE251 ILE252 ALA253 PRO254 GLU255 ASN256 ALA257 TYR258 LYS259 ILE260 VAL260A LYS261 LYS262 GLY263 ASP264 SER265 THR266 ILE267 MET268 LYS269 SER270 GLU271 LEU272 GLU273 TYR274 GLY275 ASP276 CYS277 ASN278 THR279 LYS280 CYS281 GLN282 THR283 PRO284 ILE285 GLY286 ALA287 ILE288 ASN289 SER290 SER291 MET292 PRO293 PHE294 HIS295 ASN296 ILE297 HIS298 PRO299 LEU300 THR301 ILE302 GLY303 GLU304 CYS305 PRO306 LYS307 TYR308 VAL309 LYS310 SER311 ASN312 ARG313 LEU314 VAL315 LEU316 ALA317 THR318 GLY319 LEU320 ARG321 ASN322 SER323 PRO324
Unit 6 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 GLY12 GLY13 TRP14 GLN15 GLY16 MET17 VAL18 ASP19 GLY20 TRP21 TYR22 GLY23 TYR24 HIS25 HIS26 SER27 ASN28 GLU29 GLN30 GLY31 SER32 GLY33 TYR34 ALA35 ALA36 ASP37 LYS38 GLU39 SER40 THR41 GLN42 LYS43 ALA44 ILE45 ASP46 GLY47 VAL48 THR49 ASN50 LYS51 VAL52 ASN53 SER54 ILE55 ILE56 ASP57 LYS58 MET59 ASN60 THR61 GLN62 PHE63 GLU64 ALA65 VAL66 GLY67 ARG68 GLU69 PHE70 ASN71 ASN72 LEU73 GLU74 ARG75 ARG76 ILE77 GLU78 ASN79 LEU80 ASN81 LYS82 LYS83 MET84 GLU85 ASP86 GLY87 PHE88 LEU89 ASP90 VAL91 TRP92 THR93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 LEU101 MET102 GLU103 ASN104 GLU105 ARG106 THR107 LEU108 ASP109 PHE110 HIS111 ASP112 SER113 ASN114 VAL115 LYS116 ASN117 LEU118 TYR119 ASP120 LYS121 VAL122 ARG123 LEU124 GLN125 LEU126 ARG127 ASP128 ASN129 ALA130 LYS131 GLU132 LEU133 GLY134 ASN135 GLY136 CYS137 PHE138 GLU139 PHE140 TYR141 HIS142 ARG143 CYS144 ASP145 ASN146 GLU147 CYS148 MET149 GLU150 SER151 VAL152 ARG153 ASN154 GLY155 THR156 TYR157 ASP158 TYR159 PRO160 GLN161 TYR162 SER163 GLU164 GLU165 ALA166 ARG167 LEU168 LYS169 ARG170 GLU171 GLU172 ILE173 SER174 GLY175
Ligands
Unit 7 NAG1 FUL2 NAG3
Unit 8 GAL1 SIA2
Unit 9 NAG1 FUL2 NAG3 FUC4
Unit 10 NAG1 GAL2 SIA3
Unit 11 NAG1 FUL2 NAG3
Unit 12 GAL1 SIA2
Unit 13 NAG1001
Unit 14 NAG1001
Unit 15 NAG1001
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany