5E08 - Sequence, Chains, Asymmetric and Biological Units

• Title: SPECIFIC RECOGNITION OF A SINGLE-STRANDED RNA SEQUENCE BY AN ENGINEERED SYNTHETIC ANTIBODY FRAGMENT
• Keywords: ANTIBODY, FAB, SSRNA, IMMUNE SYSTEM-RNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5E08	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	FAB HEAVY CHAIN	H	229	1731	0
2	Protein	FAB LIGHT CHAIN	L	215	1648	0
3	RNA		N	12	255	0
4	Water			76	0	76
total				532	3634	76

Proteins

Unit 1

GLU 2 VAL 3 GLN 4 LEU 5 VAL 6 GLU 7 SER 8 GLY 9 GLY 10 GLY 11 LEU 12 VAL 13 GLN 14 PRO 15 GLY 16 GLY 17 SER 18 LEU 19 ARG 20 LEU 21 SER 22 CYS 23 ALA 24 ALA 25 SER 26 GLY 27 PHE 28 SER 29 ILE 30 SER 31 SER 32 SER 33 TYR 34 ILE 35 HIS 36 TRP 37 VAL 38 ARG 39 GLN 40 ALA 41 PRO 42 GLY 43 LYS 44 GLY 45 LEU 46 GLU 47 TRP 48 VAL 49 ALA 50 TYR 51 ILE 52 TYR 53 PRO 54 TYR 55 TYR 56 GLY 57 SER 58 THR 59 TYR 60 TYR 61 ALA 62 ASP 63 SER 64 VAL 65 LYS 66 GLY 67 ARG 68 PHE 69 THR 70 ILE 71 SER 72 ALA 73 ASP 74 THR 75 SER 76 LYS 77 ASN 78 THR 79 ALA 80 TYR 81 LEU 82 GLN 83 MET 84 ASN 85 SER 86 LEU 87 ARG 88 ALA 89 GLU 90 ASP 91 THR 92 ALA 93 VAL 94 TYR 95 TYR 96 CYS 97 ALA 98 ARG 99 TYR 100 TYR 101 SER 102 SER 103 GLY 104 GLY 105 SER 106 TYR 107 TYR 108 ARG 109 TYR 110 SER 111 ARG 112 GLY 113 PHE 114 ASP 115 TYR 116 TRP 117 GLY 118 GLN 119 GLY 120 THR 121 LEU 122 VAL 123 THR 124 VAL 125 SER 126 SER 127 ALA 128 SER 129 THR 130 LYS 131 GLY 132 PRO 133 SER 134 VAL 135 PHE 136 PRO 137 LEU 138 ALA 139 PRO 140 SER 141 SER 146 GLY 147 GLY 148 THR 149 ALA 150 ALA 151 LEU 152 GLY 153 CYS 154 LEU 155 VAL 156 LYS 157 ASP 158 TYR 159 PHE 160 PRO 161 GLU 162 PRO 163 VAL 164 THR 165 VAL 166 SER 167 TRP 168 ASN 169 SER 170 GLY 171 ALA 172 LEU 173 THR 174 SER 175 GLY 176 VAL 177 HIS 178 THR 179 PHE 180 PRO 181 ALA 182 VAL 183 LEU 184 GLN 185 SER 186 SER 187 GLY 188 LEU 189 TYR 190 SER 191 LEU 192 SER 193 SER 194 VAL 195 VAL 196 THR 197 VAL 198 PRO 199 SER 200 SER 201 SER 202 LEU 203 GLY 204 THR 205 GLN 206 THR 207 TYR 208 ILE 209 CYS 210 ASN 211 VAL 212 ASN 213 HIS 214 LYS 215 PRO 216 SER 217 ASN 218 THR 219 LYS 220 VAL 221 ASP 222 LYS 223 LYS 224 VAL 225 GLU 226 PRO 227 LYS 228 SER 229 CYS 230 ASP 231 LYS 232 THR 233 HIS 234

Unit 2

SER 1 ASP 2 ILE 3 GLN 4 MET 5 THR 6 GLN 7 SER 8 PRO 9 SER 10 SER 11 LEU 12 SER 13 ALA 14 SER 15 VAL 16 GLY 17 ASP 18 ARG 19 VAL 20 THR 21 ILE 22 THR 23 CYS 24 ARG 25 ALA 26 SER 27 GLN 28 SER 29 VAL 30 SER 31 SER 32 ALA 33 VAL 34 ALA 35 TRP 36 TYR 37 GLN 38 GLN 39 LYS 40 PRO 41 GLY 42 LYS 43 ALA 44 PRO 45 LYS 46 LEU 47 LEU 48 ILE 49 TYR 50 SER 51 ALA 52 SER 53 SER 54 LEU 55 TYR 56 SER 57 GLY 58 VAL 59 PRO 60 SER 61 ARG 62 PHE 63 SER 64 GLY 65 SER 66 ARG 67 SER 68 GLY 69 THR 70 ASP 71 PHE 72 THR 73 LEU 74 THR 75 ILE 76 SER 77 SER 78 LEU 79 GLN 80 PRO 81 GLU 82 ASP 83 PHE 84 ALA 85 THR 86 TYR 87 TYR 88 CYS 89 GLN 90 GLN 91 SER 92 TYR 93 SER 94 TYR 95 PRO 96 TYR 97 THR 98 PHE 99 GLY 100 GLN 101 GLY 102 THR 103 LYS 104 VAL 105 GLU 106 ILE 107 LYS 108 ARG 109 THR 110 VAL 111 ALA 112 ALA 113 PRO 114 SER 115 VAL 116 PHE 117 ILE 118 PHE 119 PRO 120 PRO 121 SER 122 ASP 123 SER 124 GLN 125 LEU 126 LYS 127 SER 128 GLY 129 THR 130 ALA 131 SER 132 VAL 133 VAL 134 CYS 135 LEU 136 LEU 137 ASN 138 ASN 139 PHE 140 TYR 141 PRO 142 ARG 143 GLU 144 ALA 145 LYS 146 VAL 147 GLN 148 TRP 149 LYS 150 VAL 151 ASP 152 ASN 153 ALA 154 LEU 155 GLN 156 SER 157 GLY 158 ASN 159 SER 160 GLN 161 GLU 162 SER 163 VAL 164 THR 165 GLU 166 GLN 167 ASP 168 SER 169 LYS 170 ASP 171 SER 172 THR 173 TYR 174 SER 175 LEU 176 SER 177 SER 178 THR 179 LEU 180 THR 181 LEU 182 SER 183 LYS 184 ALA 185 ASP 186 TYR 187 GLU 188 LYS 189 HIS 190 LYS 191 VAL 192 TYR 193 ALA 194 CYS 195 GLU 196 VAL 197 THR 198 HIS 199 GLN 200 GLY 201 LEU 202 SER 203 SER 204 PRO 205 VAL 206 THR 207 LYS 208 SER 209 PHE 210 ASN 211 ARG 212 GLY 213 GLU 214 CYS 215

Nucleic acids

Unit 3

G 1 U 2 A 3 U 4 G 5 C 6 A 7 U 8 A 9 G 10 G 11 C 12